mRNA_H-elongata_contig74905.15170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74905.15170.1
Unique NamemRNA_H-elongata_contig74905.15170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-12
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 117
            LGL S+GLAHLLE +C F  DKKHQLSDWR RPLP DML
Sbjct:  422 LGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADML 460
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A5C3QJ95_9AGAR (HRDC domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QJ95_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 8.700e-11
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 120
            L    +GLAHLLE+YC F  DKKHQLSDWR RPLP DML+
Sbjct:  464 LDFPRHGLAHLLEMYCDFVPDKKHQLSDWRIRPLPEDMLE 503
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A6A4IAY6_9AGAR (HRDC domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4IAY6_9AGAR)

HSP 1 Score: 62.0 bits (149), Expect = 4.160e-10
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 117
            LG   +GLAHLLE+YC FT DK++QL+DWR RPLP +ML
Sbjct:  351 LGFPRHGLAHLLEMYCDFTPDKRYQLADWRIRPLPEEML 389
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A0C3AWU5_PILCF (HRDC domain-containing protein n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3AWU5_PILCF)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-10
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 117
            L    +GLAHLLE YC FTADK++QL+DWR RPLP +ML
Sbjct:  346 LEFSKHGLAHLLEAYCDFTADKRYQLADWRIRPLPEEML 384
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: E1ZEK3_CHLVA (HRDC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZEK3_CHLVA)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 117
            LG++ +GLAHLL+ YCGF ADK+ QL+DWR RPL  +ML
Sbjct:  357 LGMRGHGLAHLLDFYCGFKADKRFQLADWRVRPLTPEML 395
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 120
            L L S GLA+ L+ +CGF ADKKHQL DWR RPLP  MLK
Sbjct:  171 LDLPSRGLAYALKEFCGFEADKKHQLGDWRVRPLPPAMLK 210
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A078A2V7_STYLE (Exosome component 10 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A2V7_STYLE)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   16 YGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK 120
            YGLA LL+ YCG  ADKK+QL+DWR RPLP +MLK
Sbjct:  407 YGLAFLLQSYCGVIADKKYQLADWRQRPLPEEMLK 441
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A7S1B8E6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.330e-8
Identity = 27/38 (71.05%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDM 114
            L L S GLAHLL    GF ADKKHQL DWR RPLP DM
Sbjct:  208 LRLPSAGLAHLLARSAGFAADKKHQLGDWRRRPLPEDM 245
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BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A250XL59_9CHLO (HRDC domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XL59_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDML 117
            L L S+ LA LLE +CGF ADK++QL+DWR RPL  +ML
Sbjct:  341 LSLSSFSLAFLLEHFCGFKADKRYQLADWRVRPLSSEML 379
[Close]
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Match: A0A7S1ZWU0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWU0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-7
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDM 114
            L   S GLA+LL  Y G  ADKKHQLSDWR RPLP DM
Sbjct:  243 LKFPSAGLAYLLSKYAGIIADKKHQLSDWRQRPLPEDM 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74905.15170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI2.800e-1276.92HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A5C3QJ95_9AGAR8.700e-1170.00HRDC domain-containing protein n=1 Tax=Pterula gra... [more]
A0A6A4IAY6_9AGAR4.160e-1066.67HRDC domain-containing protein n=1 Tax=Gymnopus an... [more]
A0A0C3AWU5_PILCF7.770e-1066.67HRDC domain-containing protein n=1 Tax=Piloderma c... [more]
E1ZEK3_CHLVA1.450e-964.10HRDC domain-containing protein n=1 Tax=Chlorella v... [more]
A0A836CIH7_9STRA5.090e-967.50Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A078A2V7_STYLE1.300e-871.43Exosome component 10 n=1 Tax=Stylonychia lemnae Ta... [more]
A0A7S1B8E6_9STRA5.330e-871.05Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A250XL59_9CHLO1.160e-761.54HRDC domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A7S1ZWU0_9STRA1.160e-768.42Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74905contigH-elongata_contig74905:2943..3065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue6.1e-10
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.9883504-CDS-H-elongata_contig74905:2942..30651622931153.9883504-CDS-H-elongata_contig74905:2942..3065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74905 2943..3065 -
1691679720.522927-CDS-H-elongata_contig74905:2942..30651691679720.522927-CDS-H-elongata_contig74905:2942..3065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74905 2943..3065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74905.15170.1prot_H-elongata_contig74905.15170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74905 2943..3065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74905.15170.1

>prot_H-elongata_contig74905.15170.1 ID=prot_H-elongata_contig74905.15170.1|Name=mRNA_H-elongata_contig74905.15170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
LGLQSYGLAHLLEVYCGFTADKKHQLSDWRTRPLPLDMLK*
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mRNA from alignment at H-elongata_contig74905:2943..3065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74905.15170.1 ID=mRNA_H-elongata_contig74905.15170.1|Name=mRNA_H-elongata_contig74905.15170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig74905:2943..3065- (Himanthalia elongata Himel1 dioecious)
CTTGGGCTCCAGTCTTACGGACTGGCTCACCTTCTGGAGGTGTACTGTGG
CTTTACCGCAGACAAGAAGCACCAGCTCAGCGATTGGCGCACGCGGCCGC
TACCCCTGGACATGCTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74905:2943..3065-

>mRNA_H-elongata_contig74905.15170.1 ID=mRNA_H-elongata_contig74905.15170.1|Name=mRNA_H-elongata_contig74905.15170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig74905:2943..3065- (Himanthalia elongata Himel1 dioecious)
CTTGGGCTCCAGTCTTACGGACTGGCTCACCTTCTGGAGGTGTACTGTGG
CTTTACCGCAGACAAGAAGCACCAGCTCAGCGATTGGCGCACGCGGCCGC
TACCCCTGGACATGCTCAAGTGACTTGGGCTCCAGTCTTACGGACTGGCT
CACCTTCTGGAGGTGTACTGTGGCTTTACCGCAGACAAGAAGCACCAGCT
CAGCGATTGGCGCACGCGGCCGCTACCCCTGGACATGCTCAAGTGA
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