prot_H-elongata_contig74905.15169.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig74905.15169.1
Unique Name	prot_H-elongata_contig74905.15169.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	90

Homology

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.340e-27
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 0

Query:    2 PVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQG-RGIVKEFGDVSRRILSALWGWR 89
            P  ++  SD        D L  DLER+GGDVA+KAVLDASREICLRR+EKP FQE+GW+ +L+RQG  G++ +FGDV RR+LSALW WR
Sbjct:  441 PDKKHQLSDWRMRPLPADMLLIDLERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVLDDFGDVPRRVLSALWSWR 529

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.780e-16
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0

Query:    5 RYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            +YAQ+DTH+LL+VYDRLRA L   G   AI  VL++SRE+CL+RYEK  F   GW  +L+R G           +  ++ALW WR
Sbjct:  210 KYAQADTHYLLHVYDRLRAML---GTPEAIAQVLESSRELCLQRYEKEAFDPEGWRRVLQRIGGEGAGALDSAQQARMAALWDWR 291

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7S1XR06_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR06_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.190e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0

Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            D +  YA + TH LL+ YDR+R +L   G   A+++V++AS+E+ LRRYE   F   G+  +L++          D   R LSALW WR
Sbjct:  347 DTMLGYAAACTHHLLFAYDRMREELHARGSASAVQSVMEASKEVALRRYEHERFNPHGYKPLLKKLPAPATPAEKDWQERSLSALWDWR 435

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A672RAZ3_SINGR (Exosome component 10 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672RAZ3_SINGR)

HSP 1 Score: 71.6 bits (174), Expect = 1.310e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 0

Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  330 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 416

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A671KUC4_9TELE (Exosome component 10-like n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KUC4_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 0

Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  245 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 331

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A672RAU3_SINGR (Exosome component 10 n=6 Tax=Cyprinidae TaxID=7953 RepID=A0A672RAU3_SINGR)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 0

Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  427 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 513

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7S1KUD1_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KUD1_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 0

Query:    6 YAQSDTHFLLYVYDRLRADL-ERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            YA++DTHFLLY+YDRLR D+ ++  G   + +VL+ SR+IC+RRYEK ++ E  +  + R+  +GI +E  +    IL  L+ WR
Sbjct:  416 YARADTHFLLYIYDRLRNDIFDQKNGKEGLISVLEKSRQICMRRYEKFVYDESSYLYLRRKFPQGITEEEDN----ILRELFKWR 496

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7J6BPG8_9TELE (HRDC domain-containing protein n=21 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6BPG8_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 0

Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  429 DEMLKYAQADTHYLLYVYDRVRADLFDTGNSQPTLIQQVWDKSRDLSLKKYVKPVFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 515

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: UPI001FEEBAED (exosome component 10 isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEEBAED)

HSP 1 Score: 70.9 bits (172), Expect = 2.500e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0

Query:    5 RYAQSDTHFLLYVYDRLRADL-ERTGGDVA-IKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            +YAQ+DTH+LLYVYDRLRADL + T G  A I+ V   S+++CL++Y KP+F E  +  + +RQ     K F          L+ WR
Sbjct:  436 QYAQADTHYLLYVYDRLRADLFDATNGQPALIQLVWSKSKDLCLKKYLKPIFTEESYMELYKRQ----KKSFNSQQITAFRLLYAWR 518

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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A8B9KST4_ASTMX (Exosome component 10 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KST4_ASTMX)

HSP 1 Score: 69.7 bits (169), Expect = 6.260e-12
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 0

Query:    6 YAQSDTHFLLYVYDRLRADL--ERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 89
            YAQ+DTH+LLYVYDRLRADL     G    I  V   S+++CL++Y KP+F E  +  + RRQ     K F          L+ WR
Sbjct:  411 YAQADTHYLLYVYDRLRADLCDAANGQSNLIHLVWSKSKDLCLKKYVKPIFTEESYMELYRRQ----KKSFNSQQLAAFRLLYAWR 492

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot

BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQE8_ECTSI	1.340e-27	60.67	HRDC domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A836CIH7_9STRA	1.780e-16	48.24	Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr...	[more]
A0A7S1XR06_9STRA	7.190e-13	39.33	Hypothetical protein (Fragment) n=2 Tax=Phaeomonas...	[more]
A0A672RAZ3_SINGR	1.310e-12	41.76	Exosome component 10 n=1 Tax=Sinocyclocheilus grah...	[more]
A0A671KUC4_9TELE	1.330e-12	41.76	Exosome component 10-like n=2 Tax=Sinocyclocheilus...	[more]
A0A672RAU3_SINGR	1.330e-12	41.76	Exosome component 10 n=6 Tax=Cyprinidae TaxID=7953...	[more]
A0A7S1KUD1_9EUKA	1.340e-12	43.53	Hypothetical protein n=1 Tax=Percolomonas cosmopol...	[more]
A0A7J6BPG8_9TELE	1.340e-12	41.76	HRDC domain-containing protein n=21 Tax=Cyprinidae...	[more]
UPI001FEEBAED	2.500e-12	43.68	exosome component 10 isoform X1 n=2 Tax=Tachysurus...	[more]
A0A8B9KST4_ASTMX	6.260e-12	43.02	Exosome component 10 n=6 Tax=Astyanax mexicanus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.500		coord: 1..56 e-value: 1.5E-13 score: 52.7
None	No IPR available	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 3..89
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig74905	contig	H-elongata_contig74905:129..398 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig74905.15169.1	mRNA_H-elongata_contig74905.15169.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig74905 129..398 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig74905.15169.1 ID=prot_H-elongata_contig74905.15169.1|Name=mRNA_H-elongata_contig74905.15169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
DPVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYE
KPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf