mRNA_H-elongata_contig74905.15169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74905.15169.1
Unique NamemRNA_H-elongata_contig74905.15169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.340e-27
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 PVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQG-RGIVKEFGDVSRRILSALWGWR 267
            P  ++  SD        D L  DLER+GGDVA+KAVLDASREICLRR+EKP FQE+GW+ +L+RQG  G++ +FGDV RR+LSALW WR
Sbjct:  441 PDKKHQLSDWRMRPLPADMLLIDLERSGGDVAVKAVLDASREICLRRFEKPAFQEKGWSEVLKRQGGNGVLDDFGDVPRRVLSALWSWR 529
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A836CIH7_9STRA (Protein in complex with Mn, Zn, and Amp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.780e-16
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   13 RYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            +YAQ+DTH+LL+VYDRLRA L   G   AI  VL++SRE+CL+RYEK  F   GW  +L+R G           +  ++ALW WR
Sbjct:  210 KYAQADTHYLLHVYDRLRAML---GTPEAIAQVLESSRELCLQRYEKEAFDPEGWRRVLQRIGGEGAGALDSAQQARMAALWDWR 291
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7S1XR06_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR06_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.190e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            D +  YA + TH LL+ YDR+R +L   G   A+++V++AS+E+ LRRYE   F   G+  +L++          D   R LSALW WR
Sbjct:  347 DTMLGYAAACTHHLLFAYDRMREELHARGSASAVQSVMEASKEVALRRYEHERFNPHGYKPLLKKLPAPATPAEKDWQERSLSALWDWR 435
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A672RAZ3_SINGR (Exosome component 10 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672RAZ3_SINGR)

HSP 1 Score: 71.6 bits (174), Expect = 1.310e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  330 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 416
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A671KUC4_9TELE (Exosome component 10-like n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KUC4_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  245 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 331
[Close]
BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A672RAU3_SINGR (Exosome component 10 n=6 Tax=Cyprinidae TaxID=7953 RepID=A0A672RAU3_SINGR)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  427 DEMLKYAQADTHYLLYVYDRVRADLYDTGNGQPTLIQQVWDKSRDLSLKKYVKPIFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 513
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7S1KUD1_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KUD1_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   16 YAQSDTHFLLYVYDRLRADL-ERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            YA++DTHFLLY+YDRLR D+ ++  G   + +VL+ SR+IC+RRYEK ++ E  +  + R+  +GI +E  +    IL  L+ WR
Sbjct:  416 YARADTHFLLYIYDRLRNDIFDQKNGKEGLISVLEKSRQICMRRYEKFVYDESSYLYLRRKFPQGITEEEDN----ILRELFKWR 496
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BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A7J6BPG8_9TELE (HRDC domain-containing protein n=21 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6BPG8_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 1.340e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 DPVSRYAQSDTHFLLYVYDRLRADLERTGGD--VAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            D + +YAQ+DTH+LLYVYDR+RADL  TG      I+ V D SR++ L++Y KP+F E  +  + R+Q     K F          L+ WR
Sbjct:  429 DEMLKYAQADTHYLLYVYDRVRADLFDTGNSQPTLIQQVWDKSRDLSLKKYVKPVFTEDSYMELYRKQ----KKSFNTQQLAAFRLLYAWR 515
[Close]
BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: UPI001FEEBAED (exosome component 10 isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEEBAED)

HSP 1 Score: 70.9 bits (172), Expect = 2.500e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   13 RYAQSDTHFLLYVYDRLRADL-ERTGGDVA-IKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            +YAQ+DTH+LLYVYDRLRADL + T G  A I+ V   S+++CL++Y KP+F E  +  + +RQ     K F          L+ WR
Sbjct:  436 QYAQADTHYLLYVYDRLRADLFDATNGQPALIQLVWSKSKDLCLKKYLKPIFTEESYMELYKRQ----KKSFNSQQITAFRLLYAWR 518
[Close]
BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Match: A0A8B9KST4_ASTMX (Exosome component 10 n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KST4_ASTMX)

HSP 1 Score: 69.7 bits (169), Expect = 6.260e-12
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   16 YAQSDTHFLLYVYDRLRADL--ERTGGDVAIKAVLDASREICLRRYEKPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR 267
            YAQ+DTH+LLYVYDRLRADL     G    I  V   S+++CL++Y KP+F E  +  + RRQ     K F          L+ WR
Sbjct:  411 YAQADTHYLLYVYDRLRADLCDAANGQSNLIHLVWSKSKDLCLKKYVKPIFTEESYMELYRRQ----KKSFNSQQLAAFRLLYAWR 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74905.15169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI1.340e-2760.67HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CIH7_9STRA1.780e-1648.24Protein in complex with Mn, Zn, and Amp n=1 Tax=Tr... [more]
A0A7S1XR06_9STRA7.190e-1339.33Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A672RAZ3_SINGR1.310e-1241.76Exosome component 10 n=1 Tax=Sinocyclocheilus grah... [more]
A0A671KUC4_9TELE1.330e-1241.76Exosome component 10-like n=2 Tax=Sinocyclocheilus... [more]
A0A672RAU3_SINGR1.330e-1241.76Exosome component 10 n=6 Tax=Cyprinidae TaxID=7953... [more]
A0A7S1KUD1_9EUKA1.340e-1243.53Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7J6BPG8_9TELE1.340e-1241.76HRDC domain-containing protein n=21 Tax=Cyprinidae... [more]
UPI001FEEBAED2.500e-1243.68exosome component 10 isoform X1 n=2 Tax=Tachysurus... [more]
A0A8B9KST4_ASTMX6.260e-1243.02Exosome component 10 n=6 Tax=Astyanax mexicanus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74905contigH-elongata_contig74905:129..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue5.6e-24
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.9321249-CDS-H-elongata_contig74905:128..3981622931153.9321249-CDS-H-elongata_contig74905:128..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74905 129..398 -
1691679720.506791-CDS-H-elongata_contig74905:128..3981691679720.506791-CDS-H-elongata_contig74905:128..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74905 129..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74905.15169.1prot_H-elongata_contig74905.15169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74905 129..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74905.15169.1

>prot_H-elongata_contig74905.15169.1 ID=prot_H-elongata_contig74905.15169.1|Name=mRNA_H-elongata_contig74905.15169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
DPVSRYAQSDTHFLLYVYDRLRADLERTGGDVAIKAVLDASREICLRRYE
KPMFQERGWANILRRQGRGIVKEFGDVSRRILSALWGWR*
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mRNA from alignment at H-elongata_contig74905:129..398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74905.15169.1 ID=mRNA_H-elongata_contig74905.15169.1|Name=mRNA_H-elongata_contig74905.15169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig74905:129..398- (Himanthalia elongata Himel1 dioecious)
GATCCTGTCTCTAGGTATGCGCAATCGGACACCCATTTCCTCCTTTACGT
CTACGACAGACTTCGTGCCGACCTCGAGCGCACTGGCGGAGACGTGGCCA
TCAAGGCGGTCCTGGACGCCTCTCGAGAAATCTGCCTCAGGCGCTACGAA
AAGCCCATGTTTCAGGAGAGGGGCTGGGCGAATATCCTGAGGAGGCAAGG
ACGGGGGATCGTAAAGGAGTTCGGGGACGTTTCGAGAAGAATCCTGTCGG
CGTTGTGGGGCTGGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74905:129..398-

>mRNA_H-elongata_contig74905.15169.1 ID=mRNA_H-elongata_contig74905.15169.1|Name=mRNA_H-elongata_contig74905.15169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig74905:129..398- (Himanthalia elongata Himel1 dioecious)
GATCCTGTCTCTAGGTATGCGCAATCGGACACCCATTTCCTCCTTTACGT
CTACGACAGACTTCGTGCCGACCTCGAGCGCACTGGCGGAGACGTGGCCA
TCAAGGCGGTCCTGGACGCCTCTCGAGAAATCTGCCTCAGGCGCTACGAA
AAGCCCATGTTTCAGGAGAGGGGCTGGGCGAATATCCTGAGGAGGCAAGG
ACGGGGGATCGTAAAGGAGTTCGGGGACGTTTCGAGAAGAATCCTGTCGG
CGTTGTGGGGCTGGAGGTGAGATCCTGTCTCTAGGTATGCGCAATCGGAC
ACCCATTTCCTCCTTTACGTCTACGACAGACTTCGTGCCGACCTCGAGCG
CACTGGCGGAGACGTGGCCATCAAGGCGGTCCTGGACGCCTCTCGAGAAA
TCTGCCTCAGGCGCTACGAAAAGCCCATGTTTCAGGAGAGGGGCTGGGCG
AATATCCTGAGGAGGCAAGGACGGGGGATCGTAAAGGAGTTCGGGGACGT
TTCGAGAAGAATCCTGTCGGCGTTGTGGGGCTGGAGGTGA
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