mRNA_H-elongata_contig74890.15167.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A835ZGF0_9STRA (Putative GOT1-membrane protein required for ER to Golgi transport n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF0_9STRA) HSP 1 Score: 135 bits (339), Expect = 7.170e-39 Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQV 273
GDVLFL GITMTIGARR FVFFFKRKQ RGNLFFFGGI+LVLVRW +GM GFLNLFGPFIPIAV A+R P+IG+IL LP++S +VD++
Sbjct: 37 GDVLFLTGITMTIGARRTFVFFFKRKQLRGNLFFFGGILLVLVRWAFVGMILQVLGFLNLFGPFIPIAVAAMRTLPVIGDILALPVISPLVDRI 130
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A6H5JZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM1_9PHAE) HSP 1 Score: 124 bits (312), Expect = 8.610e-35 Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1
Query: 28 TMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGMGF---GFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
TMTIG RR FVFFFKRKQ RGNL FFGG++LV + W V+GMGF GFLNLFGPFIPIAVQALR TP++GN+L+LP+VS++VD+
Sbjct: 45 TMTIGTRRTFVFFFKRKQARGNLCFFGGVVLVFLNWAVIGMGFQVVGFLNLFGPFIPIAVQALRGTPVVGNLLNLPVVSSLVDK 128
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: D8LD56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD56_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.640e-34 Identity = 60/83 (72.29%), Postives = 70/83 (84.34%), Query Frame = 1
Query: 31 MTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGMGF---GFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
MTIG RR FVFFFKRKQ RGNL FFGG+ LV + W V+GMGF GFLNLFGPFIPIAVQALR TP++GN+L+LP+VS +VD+
Sbjct: 1 MTIGTRRTFVFFFKRKQVRGNLCFFGGVALVFLNWAVIGMGFQVVGFLNLFGPFIPIAVQALRATPVVGNLLNLPVVSALVDK 83
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A5D6XZN9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZN9_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.930e-30 Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGMG---FGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GDVLFL G+ +TIG R FF +R++WRG + F GGI+LVL+R+P++GM FGFLNLFG F P+AV LRQTP++GN+L LP++S VVD+
Sbjct: 36 GDVLFLCGLALTIGLSRTVRFFTRRERWRGIVCFLGGILLVLLRFPIIGMALQSFGFLNLFGSFFPVAVAFLRQTPVVGNVLSLPVISDVVDR 128
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A1X6PC43_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC43_PORUM) HSP 1 Score: 112 bits (281), Expect = 3.930e-30 Identity = 54/93 (58.06%), Postives = 73/93 (78.49%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGMG---FGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GD+LFLAG+T+ IG +R++ FFF+RK+ +G+ FFGG++LVLV WPV+GMG FGF+NLFG F PIA+ LR+ PI+GN + LP V VVD+
Sbjct: 35 GDLLFLAGVTLIIGVQRSYRFFFQRKKAKGSALFFGGMLLVLVGWPVIGMGVEVFGFINLFGDFFPIAIAFLRRMPIVGNFMTLPGVRVVVDK 127
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A418AR48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AR48_9STRA) HSP 1 Score: 113 bits (283), Expect = 7.390e-30 Identity = 53/93 (56.99%), Postives = 72/93 (77.42%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GDVLFL+G+ +TIG R FF + ++WRG + F GGI+LV+VRWP++GM FGFLNLFG F P+AV LRQTP+IG +L+LP++S +VD+
Sbjct: 82 GDVLFLSGLALTIGLTRTIKFFTRPERWRGIVCFLGGIVLVMVRWPIIGMIVQSFGFLNLFGSFFPVAVAFLRQTPVIGTVLNLPVISDIVDK 174
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: H3G8V1_PHYRM (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3G8V1_PHYRM) HSP 1 Score: 112 bits (279), Expect = 8.360e-30 Identity = 52/93 (55.91%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GDVLFL+G+ +TIG R FF ++++WRG + F GGI+LV++R+P++GM FGFLNLFG F P+AV LRQTP+IGN+L+LP++S +VD+
Sbjct: 36 GDVLFLSGVALTIGLSRTVRFFTRKERWRGIVCFLGGILLVMLRYPMIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVIGNVLNLPVISDIVDR 128
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: K3X7C2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7C2_GLOUD) HSP 1 Score: 110 bits (274), Expect = 4.800e-29 Identity = 51/93 (54.84%), Postives = 73/93 (78.49%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GDVLFL G+ +TIG R FF ++++WRG + F GGI+LV++R+P++GM FGFLNLFG F P+AV LRQTP++G++L+LP++S VVD+
Sbjct: 36 GDVLFLCGLALTIGLTRTIRFFTRKERWRGIVCFLGGIVLVMLRYPIIGMIIQSFGFLNLFGSFFPVAVAFLRQTPVVGSVLNLPVISDVVDR 128
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: A0A067CE71_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CE71_SAPPC) HSP 1 Score: 108 bits (271), Expect = 1.370e-28 Identity = 50/93 (53.76%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GDVLFL+G+ MTIG R FF ++ +WRG + F GGI LV++R+P++GM FGFLNLFG F P+AV LRQTP++G +L+LP++ +VD+
Sbjct: 36 GDVLFLSGLAMTIGLSRTIKFFTRKDRWRGIVCFLGGIFLVMIRYPIIGMCVQSFGFLNLFGSFFPVAVAFLRQTPVLGTVLNLPVIGDIVDK 128
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Match: F0WY71_9STRA (Vesicle transporter GOT1Blike protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WY71_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.000e-28 Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 GDVLFLAGITMTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGM---GFGFLNLFGPFIPIAVQALRQTPIIGNILDLPMVSTVVDQ 270
GD+L L+G+ +TIG +R FF +R++WRG L F GGI+LV++RWPV+GM FGFLNLFG F P+AV +RQ PI+G IL+LP + +VVD+
Sbjct: 37 GDILLLSGVALTIGFQRTIRFFTRRERWRGILCFLGGIILVMLRWPVVGMVLQSFGFLNLFGSFFPVAVAFMRQMPILGTILNLPGIRSVVDR 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74890.15167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74890.15167.1 >prot_H-elongata_contig74890.15167.1 ID=prot_H-elongata_contig74890.15167.1|Name=mRNA_H-elongata_contig74890.15167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MTIGARRAFVFFFKRKQWRGNLFFFGGIMLVLVRWPVLGMGFGFLNLFGPback to top mRNA from alignment at H-elongata_contig74890:2..913- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74890.15167.1 ID=mRNA_H-elongata_contig74890.15167.1|Name=mRNA_H-elongata_contig74890.15167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=912bp|location=Sequence derived from alignment at H-elongata_contig74890:2..913- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74890:2..913- >mRNA_H-elongata_contig74890.15167.1 ID=mRNA_H-elongata_contig74890.15167.1|Name=mRNA_H-elongata_contig74890.15167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig74890:2..913- (Himanthalia elongata Himel1 dioecious)back to top |