mRNA_H-elongata_contig74818.15162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74818.15162.1
Unique NamemRNA_H-elongata_contig74818.15162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 1.150e-127
Identity = 181/232 (78.02%), Postives = 200/232 (86.21%), Query Frame = 1
Query:   13 RIRERIKRTKRALLLVQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            R R+RI R KRALLL+QW Q+Y LYT+MWFA++VA +YTLGRLA++DIPT  ARRD  NFFSPQDCVE +RFT DQI+LMLELLM+P IIR +CGFVV GR+A         FPCRL+DMRLVFG S+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFYNGYKRKHAIKFQGVV PDGLFV L+G EVGTR
Sbjct:   33 RARDRIARKKRALLLMQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQDCVELMRFTRDQIVLMLELLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYGAEVGTR 264          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 6.690e-124
Identity = 181/232 (78.02%), Postives = 198/232 (85.34%), Query Frame = 1
Query:   10 LRIRERIKRTKRALLLVQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGT 678
            LRIR+RI R KRALL +QW Q+Y LYT+MWFA++ A IYTLGRLA++DIPT  ARR V NFFSPQDCVEF+RFT DQI+LMLELLM+P IIR ECGFVV GR+A         FPC LKDMRL FGLS+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRN+RFFYNGYKRKHAIKFQGVV PDGLFV L+  EVGT
Sbjct:   50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGT 281          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JYJ9_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ9_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 1.240e-118
Identity = 168/217 (77.42%), Postives = 186/217 (85.71%), Query Frame = 1
Query:   58 VQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            +QW Q+Y LYT+MWFA++VA +YTLGRLA++DIPT  ARRD  NFFSPQ+CVEF+     +I+LMLELLM+P IIR ECGFVV GR+A         FPCRLKDMRLVFGLS+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFYNGYKRKHAIKFQGVV PDGLFV L+G EVGTR
Sbjct:    1 MQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQNCVEFM----SKIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYGAEVGTR 213          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 9.840e-102
Identity = 166/258 (64.34%), Postives = 191/258 (74.03%), Query Frame = 3
Query:  324 PVPLKGHASGFWSERFLYLRDFQLDATLHGLQVGVPPLAGRRTAVSKAPYFRGGGLQQRLSLDTLLELHLRNGARYCKADTQSALLLQWVQEEA-RYQVPRSRDAGWIVCPPAWSRGRHEATHDGYLLAQSQLLQKLQTHMNSPSGHPYCLYGDPAYGMSDYIQCHFSSSVNGPVTPSMKTFNRRMSQSRVTVEWGFKEMTGKWAFVDLKPQQKLLMSPVAKQYNAATLLSNFHSCLNGGDEISQYFGVEPPTLEEYL 1094
            P  LK     F  ER LYLRDFQLDATLHG QVGVPPLAGR TA +KA YF GG LQQRLS DTLL LH RN AR  +   Q      + ++ A ++Q   + D  ++    A    RH    DG+LLAQS LL+KLQTHMNSPSGH YCLYG+PAYG +D+IQC FS SVNGP+TP+M+ FN+ MS+ RVTVEWGFKEMT KWAF+D+K Q K L+SPVA QY  ATLLSNFHSCLNGG++ISQYFGVEPPTLEEYL
Sbjct:   88 PYRLKDMRLVFRPERILYLRDFQLDATLHGFQVGVPPLAGRSTAGTKASYFCGGSLQQRLSPDTLLGLHRRNCARPIR--NQRFFYNGYKRKHAIKFQGVVTPDGLFVELYGAVVGTRH----DGHLLAQSALLEKLQTHMNSPSGHRYCLYGNPAYGQTDHIQCPFSVSVNGPLTPAMRNFNKSMSRCRVTVEWGFKEMTSKWAFIDMKCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYL 339          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.420e-101
Identity = 144/211 (68.25%), Postives = 172/211 (81.52%), Query Frame = 1
Query:   76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            +E YT++W A N+AFI+T+  L  +D+ T VARRDVTNFFSPQDCV FLR T  QI+LML+LL+IP  IR +CGFVVSGR+A         FPCRLKDMRLVFGLS+SCIC+TF+WMLHF++FKWG+LL LDV RL P+L  FAEA+YN  CPLTHCW FI GTVRGIARP+R QR++YNG+KRKHAIKFQGV+ PDGLFV + GP +GTR
Sbjct:    2 FEAYTDIWMAYNMAFIHTMASLVADDVATRVARRDVTNFFSPQDCVNFLRCTQPQIMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTR 212          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 2.120e-100
Identity = 141/216 (65.28%), Postives = 170/216 (78.70%), Query Frame = 1
Query:   79 ELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTRQHMTAT 699
            ++YT++WF  N+AFIY + RL ++D PTS+ARRD T FFSPQDCV FLRFT  Q++L+L+LL+IP  IR +CGFVVSGR+A         FPCRLKDMRLVFGLS+SCICE F+WMLHF+DF+WG+LL LDV RL P L  FAEA++N GCPLTHCW FI GTVRGIARP   QR FYNG+KRKHA+KFQGV+ PDGLFV L GP    ++  T+T
Sbjct:    8 QVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLILDLLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAXRQRWPTST 223          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 3.020e-100
Identity = 145/211 (68.72%), Postives = 170/211 (80.57%), Query Frame = 1
Query:   76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            +E YT+MW A N+AFIYT+  L  +D  T VARRDVTNFFSPQDC+ FLRFT  QI+LML+LL+IP  IR +CGF VSGR+A         FPCRLKDMRLVFGLS+SCI ETF+WMLHF++FKWG+LL LDV RL P+L  FAEA+YN  CPLTHCW FI GTVRGIARP+R QR++YNG+KRKHAIKFQGV+ PDGLFV + GP +GTR
Sbjct:    2 FEAYTDMWMAYNMAFIYTMASLVTDDAATRVARRDVTNFFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTR 212          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 305 bits (782), Expect = 1.360e-99
Identity = 141/213 (66.20%), Postives = 168/213 (78.87%), Query Frame = 1
Query:   76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTRQH 687
            +E+YT++WF   +AFIY +  L ++D PTS+ARRDVT FFSPQDCV FLRFT  Q++LML+LL+IP  IR +CGFVVSGR+A         FPCRLKDMRLVFG+S+SCICE F+WMLHF+DF+WG+LL LDV RL P L  FAEA++N GCPLTHCW FI GTVRGIARP   QR  YNG+KRKHA+KFQGV+ PDGLFV L GP  GTR +
Sbjct:    8 FEVYTDIWFVYKIAFIYAMVCLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKHWQRLLYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHY 220          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5L370_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L370_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.740e-90
Identity = 137/174 (78.74%), Postives = 146/174 (83.91%), Query Frame = 1
Query:  187 NFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            NFFSPQDCVEF+RFT DQI+LMLELLM+P IIR ECG VV GR+A         FPCRLKDMRLVFGLS+SCICETF+WMLH MD K  FLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFY+GYKRKHAIKFQGVV PDGL   L+  EVGTR
Sbjct:    3 NFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGVVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHIMDVKLRFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYSGYKRKHAIKFQGVVTPDGLIDDLYAAEVGTR 176          
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 2.340e-89
Identity = 132/193 (68.39%), Postives = 152/193 (78.76%), Query Frame = 1
Query:  130 LGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
            + RL ++D PTS+AR D T FFSPQDCV FLRFT  Q++LML+LL+IP  IR +C FVVSGR+A         FPCRLKDMRLVFGLS+SCICE F+WMLHF+DF+WG+LL LDV RL P L  FAEA++N GCPLTHCW FI GTVRGIARP   QR FYNG+KRKHA+KFQGV+ PDGLFV L GP  GTR
Sbjct:    1 MARLELDDTPTSIARSDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTR 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0K5_9PHAE1.150e-12778.02DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JS57_9PHAE6.690e-12478.02DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JYJ9_9PHAE1.240e-11877.42DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JM46_9PHAE9.840e-10264.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7G148_ECTSI1.420e-10168.25DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV22_9PHAE2.120e-10065.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL85_ECTSI3.020e-10068.72DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KRJ1_9PHAE1.360e-9966.20DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L370_9PHAE1.740e-9078.74DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE2.340e-8968.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74818contigH-elongata_contig74818:930..2550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue4.8e-60
Seed eggNOG ortholog2880.D7G148
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
Ec32 ortholog descriptionHarbinger transposase-derived nuclease domain
Ec32 orthologEc-05_000600.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1100
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74818.15162.1prot_H-elongata_contig74818.15162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74818 1373..2155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.9418068-UTR-H-elongata_contig74818:929..11691622931152.9418068-UTR-H-elongata_contig74818:929..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 930..1169 +
1691679719.9740267-UTR-H-elongata_contig74818:929..11691691679719.9740267-UTR-H-elongata_contig74818:929..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 930..1169 +
1622931152.95981-UTR-H-elongata_contig74818:1363..13721622931152.95981-UTR-H-elongata_contig74818:1363..1372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 1364..1372 +
1691679719.9943037-UTR-H-elongata_contig74818:1363..13721691679719.9943037-UTR-H-elongata_contig74818:1363..1372Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 1364..1372 +
1622931153.0012214-UTR-H-elongata_contig74818:2155..25501622931153.0012214-UTR-H-elongata_contig74818:2155..2550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 2156..2550 +
1691679720.0339098-UTR-H-elongata_contig74818:2155..25501691679720.0339098-UTR-H-elongata_contig74818:2155..2550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74818 2156..2550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.9722347-CDS-H-elongata_contig74818:1372..16801622931152.9722347-CDS-H-elongata_contig74818:1372..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74818 1373..1680 +
1691679720.003999-CDS-H-elongata_contig74818:1372..16801691679720.003999-CDS-H-elongata_contig74818:1372..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74818 1373..1680 +
1622931152.9872937-CDS-H-elongata_contig74818:2007..21551622931152.9872937-CDS-H-elongata_contig74818:2007..2155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74818 2008..2155 +
1691679720.0222547-CDS-H-elongata_contig74818:2007..21551691679720.0222547-CDS-H-elongata_contig74818:2007..2155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74818 2008..2155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74818.15162.1

>prot_H-elongata_contig74818.15162.1 ID=prot_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MLELLMIPPIIRKECGFVVSGRDAFPCRLKDMRLVFGLSDSCICETFSWM
LHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRG
IARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTRQHMTAT
C*
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mRNA from alignment at H-elongata_contig74818:930..2550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74818.15162.1 ID=mRNA_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1621bp|location=Sequence derived from alignment at H-elongata_contig74818:930..2550+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCGCCTACGCATTCGTGAGAGAATCAAACGTACGAAGCGAGCACT GCTGTTGGTGCAGTGGTGGCAGACGTACGAGCTCTACACCAACATGTGGT TTGCTGCCAACGTCGCCTTCATCTACACGCTGGGCCGCCTGGCAATGAAT GACATCCCGACCAGTGTTGCACGGAGGGATGTGACCAACTTCTTCAGCCC TCAGGACTGCGTCGAGTTTTTGAGGTTCACGTGAGACCAGGTAAAACTTT GAACGAAATATTTTGCGGTCGTGTGCCAGCCCACACGTGCCAGCCGCACG CTGCTGTCTGTCCTGTACAAACAAACGCATATCATGATTGCATTCGATCG ACCGCTAACTTTGCTGTCACAACCGTGCCACCAGGCTCATCTCATGCTAC TTATGCTACATACTTCACATCTATTTTGCTGCAGATCATCCTGATGCTGG AACTGCTGATGATACCTCCCATCATTCGCAAAGAGTGTGGCTTTGTGGTG AGCGGACGAGATGCGTTCCCGTGCCGCTTAAAGGACATGCGTCTGGTTTT TGGTCTGAGCGATTCCTGTATCTGCGAGACTTTCAGCTGGATGCTACACT TCATGGACTTCAAGTGGGGGTTCCTCCTCTTGCTGGACGTCGGACGGCTG TTTCCAAAGCTCCGTACTTTCGCGGAGGCGGTCTACAACAAAGGTTGTCC CTTGACACACTGTTGGAGCTTCATCTACGGAACGGTGCGCGGTATTGCAA GGTATGTGTCGGACGTCGTGCCCTGTTTGACGGGCGGCAGTTGTTGAAAT GCACCAGGGATGGAAATGCACTTCCTTTATGTAGTCTCATCCACATCTAC CGTTGCCCAGACCATCGCGTAAGGTGGGTATACTTGGGTTGCCGCCTCAG ACGACTTGCCTCAAACAACACGAACGTTTGCGGGTGCATTTATTTACCGT TTGTCTTGGTGCCCCCGCTGAAGGAAAAACTCCTGGTCGTTGACCATTTT TCAAAACATTCTCGGCGACGAAATAGACCTGAGCACCCTGTTCTGTGCGT GATATACTGTTAACGATGCTTGCGTCAGGCCGATACGCAATCAGCGCTTC TTCTACAATGGGTACAAGAGGAAGCACGCTATCAAGTTCCAAGGAGTCGT GATGCCGGATGGATTGTTTGTCCACCTGCATGGTCCAGAGGTCGGCACGA GGCAACACATGACGGCTACTTGCTAGCGCAGTCTCAACTGCTGCAGAAGT TGCAGACCCACATGAACAGCCCTTCAGGCCACCCGTACTGCTTGTATGGT GATCCAGCGTATGGCATGAGCGATTACATACAGTGCCATTTCAGCTCATC AGTCAACGGCCCCGTCACGCCATCGATGAAAACCTTCAACAGAAGGATGA GCCAATCCCGAGTAACGGTCGAGTGGGGGTTCAAGGAAATGACTGGCAAG TGGGCCTTCGTTGACCTGAAGCCTCAGCAAAAACTCCTGATGAGTCCGGT AGCGAAGCAGTACAATGCAGCAACACTGTTGTCGAACTTCCACTCCTGCC TGAACGGGGGCGACGAGATTTCGCAGTACTTTGGGGTAGAGCCTCCGACG CTGGAAGAGTACCTCGATGTT
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Coding sequence (CDS) from alignment at H-elongata_contig74818:930..2550+

>mRNA_H-elongata_contig74818.15162.1 ID=mRNA_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig74818:930..2550+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGAACTGCTGATGATACCTCCCATCATTCGCAAAGAGTGTGGCTT
TGTGGTGAGCGGACGAGATGCGTTCCCGTGCCGCTTAAAGGACATGCGTC
TGGTTTTTGGTCTGAGCGATTCCTGTATCTGCGAGACTTTCAGCTGGATG
CTACACTTCATGGACTTCAAGTGGGGGTTCCTCCTCTTGCTGGACGTCGG
ACGGCTGTTTCCAAAGCTCCGTACTTTCGCGGAGGCGGTCTACAACAAAG
GTTGTCCCTTGACACACTGTTGGAGCTTCATCTACGGAACGGTGCGCGGT
ATTGCAAGATGCTGGAACTGCTGATGATACCTCCCATCATTCGCAAAGAG
TGTGGCTTTGTGGTGAGCGGACGAGATGCGTTCCCGTGCCGCTTAAAGGA
CATGCGTCTGGTTTTTGGTCTGAGCGATTCCTGTATCTGCGAGACTTTCA
GCTGGATGCTACACTTCATGGACTTCAAGTGGGGGTTCCTCCTCTTGCTG
GACGTCGGACGGCTGTTTCCAAAGCTCCGTACTTTCGCGGAGGCGGTCTA
CAACAAAGGTTGTCCCTTGACACACTGTTGGAGCTTCATCTACGGAACGG
TGCGCGGTATTGCAAGGCCGATACGCAATCAGCGCTTCTTCTACAATGGG
TACAAGAGGAAGCACGCTATCAAGTTCCAAGGAGTCGTGATGCCGGATGG
ATTGTTTGTCCACCTGCATGGTCCAGAGGTCGGCACGAGGCAACACATGA
CGGCTACTTGCTAGGCCGATACGCAATCAGCGCTTCTTCTACAATGGGTA
CAAGAGGAAGCACGCTATCAAGTTCCAAGGAGTCGTGATGCCGGATGGAT
TGTTTGTCCACCTGCATGGTCCAGAGGTCGGCACGAGGCAACACATGACG
GCTACTTGCTAG
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