mRNA_H-elongata_contig74818.15162.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE) HSP 1 Score: 377 bits (968), Expect = 1.150e-127 Identity = 181/232 (78.02%), Postives = 200/232 (86.21%), Query Frame = 1
Query: 13 RIRERIKRTKRALLLVQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
R R+RI R KRALLL+QW Q+Y LYT+MWFA++VA +YTLGRLA++DIPT ARRD NFFSPQDCVE +RFT DQI+LMLELLM+P IIR +CGFVV GR+A FPCRL+DMRLVFG S+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFYNGYKRKHAIKFQGVV PDGLFV L+G EVGTR
Sbjct: 33 RARDRIARKKRALLLMQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQDCVELMRFTRDQIVLMLELLMVPAIIRTDCGFVVGGREALCVLLYRLAFPCRLEDMRLVFGQSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYGAEVGTR 264
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE) HSP 1 Score: 372 bits (955), Expect = 6.690e-124 Identity = 181/232 (78.02%), Postives = 198/232 (85.34%), Query Frame = 1
Query: 10 LRIRERIKRTKRALLLVQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGT 678
LRIR+RI R KRALL +QW Q+Y LYT+MWFA++ A IYTLGRLA++DIPT ARR V NFFSPQDCVEF+RFT DQI+LMLELLM+P IIR ECGFVV GR+A FPC LKDMRL FGLS+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRN+RFFYNGYKRKHAIKFQGVV PDGLFV L+ EVGT
Sbjct: 50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGT 281
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JYJ9_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ9_9PHAE) HSP 1 Score: 351 bits (901), Expect = 1.240e-118 Identity = 168/217 (77.42%), Postives = 186/217 (85.71%), Query Frame = 1
Query: 58 VQWWQTYELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
+QW Q+Y LYT+MWFA++VA +YTLGRLA++DIPT ARRD NFFSPQ+CVEF+ +I+LMLELLM+P IIR ECGFVV GR+A FPCRLKDMRLVFGLS+SCICETF+WMLHFMDFKWGFLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFYNGYKRKHAIKFQGVV PDGLFV L+G EVGTR
Sbjct: 1 MQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQNCVEFM----SKIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDGLFVDLYGAEVGTR 213
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE) HSP 1 Score: 313 bits (801), Expect = 9.840e-102 Identity = 166/258 (64.34%), Postives = 191/258 (74.03%), Query Frame = 3
Query: 324 PVPLKGHASGFWSERFLYLRDFQLDATLHGLQVGVPPLAGRRTAVSKAPYFRGGGLQQRLSLDTLLELHLRNGARYCKADTQSALLLQWVQEEA-RYQVPRSRDAGWIVCPPAWSRGRHEATHDGYLLAQSQLLQKLQTHMNSPSGHPYCLYGDPAYGMSDYIQCHFSSSVNGPVTPSMKTFNRRMSQSRVTVEWGFKEMTGKWAFVDLKPQQKLLMSPVAKQYNAATLLSNFHSCLNGGDEISQYFGVEPPTLEEYL 1094
P LK F ER LYLRDFQLDATLHG QVGVPPLAGR TA +KA YF GG LQQRLS DTLL LH RN AR + Q + ++ A ++Q + D ++ A RH DG+LLAQS LL+KLQTHMNSPSGH YCLYG+PAYG +D+IQC FS SVNGP+TP+M+ FN+ MS+ RVTVEWGFKEMT KWAF+D+K Q K L+SPVA QY ATLLSNFHSCLNGG++ISQYFGVEPPTLEEYL
Sbjct: 88 PYRLKDMRLVFRPERILYLRDFQLDATLHGFQVGVPPLAGRSTAGTKASYFCGGSLQQRLSPDTLLGLHRRNCARPIR--NQRFFYNGYKRKHAIKFQGVVTPDGLFVELYGAVVGTRH----DGHLLAQSALLEKLQTHMNSPSGHRYCLYGNPAYGQTDHIQCPFSVSVNGPLTPAMRNFNKSMSRCRVTVEWGFKEMTSKWAFIDMKCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYL 339
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: D7G148_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G148_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.420e-101 Identity = 144/211 (68.25%), Postives = 172/211 (81.52%), Query Frame = 1
Query: 76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
+E YT++W A N+AFI+T+ L +D+ T VARRDVTNFFSPQDCV FLR T QI+LML+LL+IP IR +CGFVVSGR+A FPCRLKDMRLVFGLS+SCIC+TF+WMLHF++FKWG+LL LDV RL P+L FAEA+YN CPLTHCW FI GTVRGIARP+R QR++YNG+KRKHAIKFQGV+ PDGLFV + GP +GTR
Sbjct: 2 FEAYTDIWMAYNMAFIHTMASLVADDVATRVARRDVTNFFSPQDCVNFLRCTQPQIMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICQTFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTR 212
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE) HSP 1 Score: 305 bits (781), Expect = 2.120e-100 Identity = 141/216 (65.28%), Postives = 170/216 (78.70%), Query Frame = 1
Query: 79 ELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTRQHMTAT 699
++YT++WF N+AFIY + RL ++D PTS+ARRD T FFSPQDCV FLRFT Q++L+L+LL+IP IR +CGFVVSGR+A FPCRLKDMRLVFGLS+SCICE F+WMLHF+DF+WG+LL LDV RL P L FAEA++N GCPLTHCW FI GTVRGIARP QR FYNG+KRKHA+KFQGV+ PDGLFV L GP ++ T+T
Sbjct: 8 QVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLILDLLLIPAFIRTDCGFVVSGREALWVLQYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAXRQRWPTST 223
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI) HSP 1 Score: 309 bits (792), Expect = 3.020e-100 Identity = 145/211 (68.72%), Postives = 170/211 (80.57%), Query Frame = 1
Query: 76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
+E YT+MW A N+AFIYT+ L +D T VARRDVTNFFSPQDC+ FLRFT QI+LML+LL+IP IR +CGF VSGR+A FPCRLKDMRLVFGLS+SCI ETF+WMLHF++FKWG+LL LDV RL P+L FAEA+YN CPLTHCW FI GTVRGIARP+R QR++YNG+KRKHAIKFQGV+ PDGLFV + GP +GTR
Sbjct: 2 FEAYTDMWMAYNMAFIYTMASLVTDDAATRVARRDVTNFFSPQDCINFLRFTQPQIMLMLDLLLIPAFIRTDCGFAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTR 212
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE) HSP 1 Score: 305 bits (782), Expect = 1.360e-99 Identity = 141/213 (66.20%), Postives = 168/213 (78.87%), Query Frame = 1
Query: 76 YELYTNMWFAANVAFIYTLGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTRQH 687
+E+YT++WF +AFIY + L ++D PTS+ARRDVT FFSPQDCV FLRFT Q++LML+LL+IP IR +CGFVVSGR+A FPCRLKDMRLVFG+S+SCICE F+WMLHF+DF+WG+LL LDV RL P L FAEA++N GCPLTHCW FI GTVRGIARP QR YNG+KRKHA+KFQGV+ PDGLFV L GP GTR +
Sbjct: 8 FEVYTDIWFVYKIAFIYAMVCLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCGFVVSGREALCVLLYRLAFPCRLKDMRLVFGMSESCICEVFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKHWQRLLYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHY 220
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5L370_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L370_9PHAE) HSP 1 Score: 283 bits (724), Expect = 1.740e-90 Identity = 137/174 (78.74%), Postives = 146/174 (83.91%), Query Frame = 1
Query: 187 NFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
NFFSPQDCVEF+RFT DQI+LMLELLM+P IIR ECG VV GR+A FPCRLKDMRLVFGLS+SCICETF+WMLH MD K FLL LDV RL PKLRTFAEAVYNKGCPLTHCW+FI GTVRGIARPIRNQRFFY+GYKRKHAIKFQGVV PDGL L+ EVGTR
Sbjct: 3 NFFSPQDCVEFMRFTRDQIVLMLELLMVPAIIRTECGVVVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHIMDVKLRFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYSGYKRKHAIKFQGVVTPDGLIDDLYAAEVGTR 176
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE) HSP 1 Score: 281 bits (718), Expect = 2.340e-89 Identity = 132/193 (68.39%), Postives = 152/193 (78.76%), Query Frame = 1
Query: 130 LGRLAMNDIPTSVARRDVTNFFSPQDCVEFLRFT*DQIILMLELLMIPPIIRKECGFVVSGRDA---------FPCRLKDMRLVFGLSDSCICETFSWMLHFMDFKWGFLLLLDVGRLFPKLRTFAEAVYNKGCPLTHCWSFIYGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVMPDGLFVHLHGPEVGTR 681
+ RL ++D PTS+AR D T FFSPQDCV FLRFT Q++LML+LL+IP IR +C FVVSGR+A FPCRLKDMRLVFGLS+SCICE F+WMLHF+DF+WG+LL LDV RL P L FAEA++N GCPLTHCW FI GTVRGIARP QR FYNG+KRKHA+KFQGV+ PDGLFV L GP GTR
Sbjct: 1 MARLELDDTPTSIARSDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFIRTDCEFVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTR 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74818.15162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74818.15162.1 >prot_H-elongata_contig74818.15162.1 ID=prot_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MLELLMIPPIIRKECGFVVSGRDAFPCRLKDMRLVFGLSDSCICETFSWMback to top mRNA from alignment at H-elongata_contig74818:930..2550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74818.15162.1 ID=mRNA_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1621bp|location=Sequence derived from alignment at H-elongata_contig74818:930..2550+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74818:930..2550+ >mRNA_H-elongata_contig74818.15162.1 ID=mRNA_H-elongata_contig74818.15162.1|Name=mRNA_H-elongata_contig74818.15162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig74818:930..2550+ (Himanthalia elongata Himel1 dioecious)back to top |