mRNA_H-elongata_contig74807.15159.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: UPI0007861F7A (hypothetical protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI0007861F7A) HSP 1 Score: 68.2 bits (165), Expect = 1.230e-9 Identity = 39/148 (26.35%), Postives = 64/148 (43.24%), Query Frame = 1
Query: 1 RPVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVL 444
+ ++G+C GHQ++A+ALGG C A WN G ++ FP + +L+++H D+V++LP GA I ++ +C + M++ + LT Q HPEF EY R +L
Sbjct: 91 KKLIGICFGHQLVAEALGGKTCK--------------------------------AAQGWNVGVQSISLQKTHHFPYLDNNHFRLIFNHQDQVVRLPEGAELIGSTPNCPIAAMLIGDHI----------LTLQGHPEFTPEYARELL 196
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0P9FAI3_RHOGW (GATase domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9FAI3_RHOGW) HSP 1 Score: 64.3 bits (155), Expect = 4.700e-8 Identity = 50/179 (27.93%), Postives = 77/179 (43.02%), Query Frame = 1
Query: 7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRP----SLLTFQAHPEFNYEYGRRVLNGILDADVKQGRITHEMAISLKDQASSWD 531
+LG+C GHQ++A+A GG C R+ PK W G+ + + ++K+ H D V +P G + +S C VHGM+ VE +G P S+LT Q HPEFN ++N ++D +G I+HE+A ++ A D
Sbjct: 136 LLGICFGHQVIARAYGG-TCERS----------------PKG---------------WEIGTRRIEMTQRGKQLFEGNEKIKIHQMHRDHVPTVPEGFDLLGSSSGCDVHGMVRF--VEDEGAPHTVENVSILTLQGHPEFN----STIVNEVIDMREAKGVISHELAEESREYAGEHD 276
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A7S2DM41_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM41_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.280e-6 Identity = 47/151 (31.13%), Postives = 69/151 (45.70%), Query Frame = 1
Query: 4 PVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGIL 456
P+LG+C GHQI+A+ALGG + ++ + A A T N + L P+ + + LLYHHND V ++P A + S H + E RPS++TFQAHPEF+ G++VL I+
Sbjct: 133 PMLGICFGHQIIAEALGG---------------DGSVVLNSEHGCQA---GACFFRATTNGKTLLE-------LPDCD---VALLYHHNDVVKRIPEDAVCLGRSAENPYHAVAYN---ECHTSGRPSIITFQAHPEFSTTTGKKVLKQII 252
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A8J3AA54_9ACTN (GMP synthase n=1 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3AA54_9ACTN) HSP 1 Score: 58.9 bits (141), Expect = 1.850e-6 Identity = 42/148 (28.38%), Postives = 58/148 (39.19%), Query Frame = 1
Query: 4 PVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLN 447
P++G+C GHQ+ A ALGG V R G W G A + + +LL H D+V++LP GAT ++TSRH V R ++L FQ HPEF Y +L+
Sbjct: 92 PMVGICFGHQLFASALGGEV-QRAGQ-------------------------------GWGVGVHEASVEHPTDWMQPASSAYRLLVSHQDQVVRLPEGATRVATSRHAPVAAF-----------QRDNVLGFQGHPEFTPPYAEALLS 196
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0L0VFJ4_9BASI (GATase domain-containing protein n=2 Tax=Puccinia striiformis f. sp. tritici TaxID=168172 RepID=A0A0L0VFJ4_9BASI) HSP 1 Score: 57.0 bits (136), Expect = 1.480e-5 Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 1
Query: 7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTF--------QAHPEFNYEYGRRVLN 447
++G+C GHQIMA++LG V ARN Y + E L + KE + DG LKL H D V +LP G N+ T+ C + G+I P P+ L + Q HPEFNY+ + LN
Sbjct: 140 LIGICFGHQIMARSLGSKV-ARNPLGWEYGIYEIALNSIGKELFKVD-----------------------DGI-------LKLHQVHRDIVNELPEGTYNLGTTSICNIQGIIKMNDSNPPLNPKDQSLDYNRIRMICLQGHPEFNYDILKDSLN 263
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A2S4VXI6_9BASI (RRM domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4VXI6_9BASI) HSP 1 Score: 57.0 bits (136), Expect = 3.050e-5 Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 1
Query: 7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRP--------RPSLLTFQAHPEFNYEYGRRVLN 447
++G+C GHQIMA++LG V ARN Y + E L + KE + DG LKL H D V +LP G N+ T+ C + G+I P P R ++ Q HPEFNY+ + LN
Sbjct: 112 LIGICFGHQIMARSLGSKV-ARNPLGWEYGIYEIALNSIGKELFKVD-----------------------DGI-------LKLHQVHRDIVNELPEGTYNLGTTSICKIQGIIKMNDPNPPLNPNDQSLDYNRIRMICLQGHPEFNYDILKDSLN 235
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0G4HYR3_9ALVE (GATase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYR3_9ALVE) HSP 1 Score: 55.1 bits (131), Expect = 6.470e-5 Identity = 49/164 (29.88%), Postives = 70/164 (42.68%), Query Frame = 1
Query: 7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGA---------TNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGILDADVK 471
++GVC GHQI+A+ALGG V A L H L ++ G PS + E E +KL + HND V+ LP A ++ S C V G+ ++ E +G R +T Q HPE+ G+ L G++DA K
Sbjct: 102 MVGVCFGHQIIARALGGSVVANPKGL-HLRLS------------------------SFEPNLGAYPSGLFNTSGE-EAEAVKLHFSHNDVVVSLPSPAEGLPEGVSVASLGGSPMCPVQGLCLSE--EGEGGGRVFGVTLQGHPEYATPTGQGCLRGVIDAFCK 237
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A511KKB6_RHOTO (Malate synthase n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KKB6_RHOTO) HSP 1 Score: 55.8 bits (133), Expect = 6.760e-5 Identity = 47/165 (28.48%), Postives = 68/165 (41.21%), Query Frame = 1
Query: 7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMI-MATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGILDADVKQGRITHEMA 498
++G+C GHQI+A+A G V RNG + +L A +E EG G + + H D V LPP + ++ C +HGM+ + P S +T Q HPEF+ E R I+DA G I+HE+A
Sbjct: 138 LIGICFGHQIIARAFGSTV-ERNGKGWEIGTRRVELTARGREVF---------------EGRG----------------EIAVHQMHRDHVPSLPPSFELLGSTPACAIHGMVRLVDPSAPFSHTNISAVTLQGHPEFDGEMVRT----IIDAREAGGVISHEVA 266 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74807.15159.1 >prot_H-elongata_contig74807.15159.1 ID=prot_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp MAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEback to top mRNA from alignment at H-elongata_contig74807:2..1830- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74807.15159.1 ID=mRNA_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-elongata_contig74807:2..1830- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74807:2..1830- >mRNA_H-elongata_contig74807.15159.1 ID=mRNA_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig74807:2..1830- (Himanthalia elongata Himel1 dioecious)back to top |