mRNA_H-elongata_contig74807.15159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74807.15159.1
Unique NamemRNA_H-elongata_contig74807.15159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: UPI0007861F7A (hypothetical protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI0007861F7A)

HSP 1 Score: 68.2 bits (165), Expect = 1.230e-9
Identity = 39/148 (26.35%), Postives = 64/148 (43.24%), Query Frame = 1
Query:    1 RPVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVL 444
            + ++G+C GHQ++A+ALGG  C                                 A   WN G      ++   FP  +    +L+++H D+V++LP GA  I ++ +C +  M++   +          LT Q HPEF  EY R +L
Sbjct:   91 KKLIGICFGHQLVAEALGGKTCK--------------------------------AAQGWNVGVQSISLQKTHHFPYLDNNHFRLIFNHQDQVVRLPEGAELIGSTPNCPIAAMLIGDHI----------LTLQGHPEFTPEYARELL 196          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0P9FAI3_RHOGW (GATase domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9FAI3_RHOGW)

HSP 1 Score: 64.3 bits (155), Expect = 4.700e-8
Identity = 50/179 (27.93%), Postives = 77/179 (43.02%), Query Frame = 1
Query:    7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRP----SLLTFQAHPEFNYEYGRRVLNGILDADVKQGRITHEMAISLKDQASSWD 531
            +LG+C GHQ++A+A GG  C R+                PK                W  G+      +      +   ++K+   H D V  +P G   + +S  C VHGM+    VE +G P      S+LT Q HPEFN      ++N ++D    +G I+HE+A   ++ A   D
Sbjct:  136 LLGICFGHQVIARAYGG-TCERS----------------PKG---------------WEIGTRRIEMTQRGKQLFEGNEKIKIHQMHRDHVPTVPEGFDLLGSSSGCDVHGMVRF--VEDEGAPHTVENVSILTLQGHPEFN----STIVNEVIDMREAKGVISHELAEESREYAGEHD 276          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A7S2DM41_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM41_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.280e-6
Identity = 47/151 (31.13%), Postives = 69/151 (45.70%), Query Frame = 1
Query:    4 PVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGIL 456
            P+LG+C GHQI+A+ALGG               +  ++   +    A    A     T N  + L         P+ +   + LLYHHND V ++P  A  +  S     H +      E     RPS++TFQAHPEF+   G++VL  I+
Sbjct:  133 PMLGICFGHQIIAEALGG---------------DGSVVLNSEHGCQA---GACFFRATTNGKTLLE-------LPDCD---VALLYHHNDVVKRIPEDAVCLGRSAENPYHAVAYN---ECHTSGRPSIITFQAHPEFSTTTGKKVLKQII 252          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A8J3AA54_9ACTN (GMP synthase n=1 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3AA54_9ACTN)

HSP 1 Score: 58.9 bits (141), Expect = 1.850e-6
Identity = 42/148 (28.38%), Postives = 58/148 (39.19%), Query Frame = 1
Query:    4 PVLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLN 447
            P++G+C GHQ+ A ALGG V  R G                                 W  G   A       + +      +LL  H D+V++LP GAT ++TSRH  V               R ++L FQ HPEF   Y   +L+
Sbjct:   92 PMVGICFGHQLFASALGGEV-QRAGQ-------------------------------GWGVGVHEASVEHPTDWMQPASSAYRLLVSHQDQVVRLPEGATRVATSRHAPVAAF-----------QRDNVLGFQGHPEFTPPYAEALLS 196          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0L0VFJ4_9BASI (GATase domain-containing protein n=2 Tax=Puccinia striiformis f. sp. tritici TaxID=168172 RepID=A0A0L0VFJ4_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-5
Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 1
Query:    7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRPRPSLLTF--------QAHPEFNYEYGRRVLN 447
            ++G+C GHQIMA++LG  V ARN     Y + E  L +  KE    +                       DG        LKL   H D V +LP G  N+ T+  C + G+I      P   P+   L +        Q HPEFNY+  +  LN
Sbjct:  140 LIGICFGHQIMARSLGSKV-ARNPLGWEYGIYEIALNSIGKELFKVD-----------------------DGI-------LKLHQVHRDIVNELPEGTYNLGTTSICNIQGIIKMNDSNPPLNPKDQSLDYNRIRMICLQGHPEFNYDILKDSLN 263          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A2S4VXI6_9BASI (RRM domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4VXI6_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-5
Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 1
Query:    7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMIMATAVEPKGRP--------RPSLLTFQAHPEFNYEYGRRVLN 447
            ++G+C GHQIMA++LG  V ARN     Y + E  L +  KE    +                       DG        LKL   H D V +LP G  N+ T+  C + G+I      P   P        R  ++  Q HPEFNY+  +  LN
Sbjct:  112 LIGICFGHQIMARSLGSKV-ARNPLGWEYGIYEIALNSIGKELFKVD-----------------------DGI-------LKLHQVHRDIVNELPEGTYNLGTTSICKIQGIIKMNDPNPPLNPNDQSLDYNRIRMICLQGHPEFNYDILKDSLN 235          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A0G4HYR3_9ALVE (GATase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYR3_9ALVE)

HSP 1 Score: 55.1 bits (131), Expect = 6.470e-5
Identity = 49/164 (29.88%), Postives = 70/164 (42.68%), Query Frame = 1
Query:    7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGA---------TNISTSRHCLVHGMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGILDADVK 471
            ++GVC GHQI+A+ALGG V A    L H  L                         ++    G  PS   +   E E   +KL + HND V+ LP  A          ++  S  C V G+ ++   E +G  R   +T Q HPE+    G+  L G++DA  K
Sbjct:  102 MVGVCFGHQIIARALGGSVVANPKGL-HLRLS------------------------SFEPNLGAYPSGLFNTSGE-EAEAVKLHFSHNDVVVSLPSPAEGLPEGVSVASLGGSPMCPVQGLCLSE--EGEGGGRVFGVTLQGHPEYATPTGQGCLRGVIDAFCK 237          
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Match: A0A511KKB6_RHOTO (Malate synthase n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KKB6_RHOTO)

HSP 1 Score: 55.8 bits (133), Expect = 6.760e-5
Identity = 47/165 (28.48%), Postives = 68/165 (41.21%), Query Frame = 1
Query:    7 VLGVCLGHQIMAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNEGSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVHGMI-MATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGILDADVKQGRITHEMA 498
            ++G+C GHQI+A+A G  V  RNG       +  +L A  +E                 EG G                 + +   H D V  LPP    + ++  C +HGM+ +     P      S +T Q HPEF+ E  R     I+DA    G I+HE+A
Sbjct:  138 LIGICFGHQIIARAFGSTV-ERNGKGWEIGTRRVELTARGREVF---------------EGRG----------------EIAVHQMHRDHVPSLPPSFELLGSTPACAIHGMVRLVDPSAPFSHTNISAVTLQGHPEFDGEMVRT----IIDAREAGGVISHEVA 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74807.15159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI0007861F7A1.230e-926.35hypothetical protein n=1 Tax=Endozoicomonas arenos... [more]
A0A0P9FAI3_RHOGW4.700e-827.93GATase domain-containing protein n=1 Tax=Rhodotoru... [more]
A0A7S2DM41_9STRA1.280e-631.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J3AA54_9ACTN1.850e-628.38GMP synthase n=1 Tax=Egicoccus halophilus TaxID=16... [more]
A0A0L0VFJ4_9BASI1.480e-530.32GATase domain-containing protein n=2 Tax=Puccinia ... [more]
A0A2S4VXI6_9BASI3.050e-530.32RRM domain-containing protein n=1 Tax=Puccinia str... [more]
A0A0G4HYR3_9ALVE6.470e-529.88GATase domain-containing protein n=1 Tax=Chromera ... [more]
A0A511KKB6_RHOTO6.760e-528.48Malate synthase n=1 Tax=Rhodosporidium toruloides ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74807contigH-elongata_contig74807:2..1830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClass I glutamine amidotransferase-like
Ec32 orthologEc-19_005010.1
Exons4
Model size1003
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74807.15159.1prot_H-elongata_contig74807.15159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74807 384..1794 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.568551-UTR-H-elongata_contig74807:1..3831622931152.568551-UTR-H-elongata_contig74807:1..383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74807 2..383 -
1691679719.833781-UTR-H-elongata_contig74807:1..3831691679719.833781-UTR-H-elongata_contig74807:1..383Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74807 2..383 -
1622931152.6678438-UTR-H-elongata_contig74807:1794..18301622931152.6678438-UTR-H-elongata_contig74807:1794..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74807 1795..1830 -
1691679719.8917897-UTR-H-elongata_contig74807:1794..18301691679719.8917897-UTR-H-elongata_contig74807:1794..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74807 1795..1830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.5861876-CDS-H-elongata_contig74807:383..4881622931152.5861876-CDS-H-elongata_contig74807:383..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 384..488 -
1691679719.843164-CDS-H-elongata_contig74807:383..4881691679719.843164-CDS-H-elongata_contig74807:383..488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 384..488 -
1622931152.6064491-CDS-H-elongata_contig74807:854..9681622931152.6064491-CDS-H-elongata_contig74807:854..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 855..968 -
1691679719.8522995-CDS-H-elongata_contig74807:854..9681691679719.8522995-CDS-H-elongata_contig74807:854..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 855..968 -
1622931152.6330674-CDS-H-elongata_contig74807:1264..13901622931152.6330674-CDS-H-elongata_contig74807:1264..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1265..1390 -
1691679719.8622854-CDS-H-elongata_contig74807:1264..13901691679719.8622854-CDS-H-elongata_contig74807:1264..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1265..1390 -
1622931152.6494446-CDS-H-elongata_contig74807:1554..17941622931152.6494446-CDS-H-elongata_contig74807:1554..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1555..1794 -
1691679719.8814504-CDS-H-elongata_contig74807:1554..17941691679719.8814504-CDS-H-elongata_contig74807:1554..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74807 1555..1794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74807.15159.1

>prot_H-elongata_contig74807.15159.1 ID=prot_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MAKALGGLVCARNGPLRHYALQESKLLATPKESTAAEVISAAIATVTWNE
GSGLAPSRRHDGFPEKERPRLKLLYHHNDEVIKLPPGATNISTSRHCLVH
GMIMATAVEPKGRPRPSLLTFQAHPEFNYEYGRRVLNGILDADVKQGRIT
HEMAISLKDQASSWDHKEFPVALELMRRLFDPIVPQCNGGSKAP*
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mRNA from alignment at H-elongata_contig74807:2..1830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74807.15159.1 ID=mRNA_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-elongata_contig74807:2..1830- (Himanthalia elongata Himel1 dioecious)
AGACCTGTATTAGGAGTTTGCCTAGGTCACCAGATAATGGCCAAGGCACT GGGCGGGCTTGTTTGCGCTCGAAATGGACCCCTTAGACATTACGCTCTCC AGGAGAGCAAACTTCTGGCGACTCCCAAGGAATCAACAGCTGCGGAGGTG ATATCGGCTGCTATCGCGACCGTTACGTGGAACGAGGGAAGCGGTCTCGC ACCCTCGAGACGGCATGATGGTTTTCCAGAAAAAGAACGACCACGGCTGA AGCTCCTCTACCATCACAACGATGAGGTCCGTCTCTGTCGTGACCACCAG CGTAAAAGGGAGTGAAGTCTCACACGTTCGATGCGGTCAATCAATCACCC ACGTTGCGTTATTTTGCCGAATTCGCGAGATAGACTAAGATCAAAATCGG TACTCTTGTGGCGTGCCGTTCGCCCCCTTATCTCTTGAAGGTAATCAAAC TCCCCCCGGGTGCTACCAACATCTCGACCTCAAGGCATTGCCTGGTACAC GGAATGATCATGGCGACTGCTGTCGAACCAAAAGGACGACCAAGACCGAG CCTTCTCACATTTCAGGTGTTCATTGTTCCAAAGCTGTAGGGTCGTAGGT CCCACCCTCCTGACCAAACACAGGGGTCAAATATTTTCAGGAAGAGTGCG TATCGTAGCATCGTTCTCCGGAGCCCACGTGTCGGCCTTGGAGGGTTAAG TGCTTGATGGTCGTGGTCAATAGTATCGTCGTTTGGCACAACGCGGAAAT CTCAACGAATCACCACTATCCAGTCGATGCAACTTGTAGTAAAAAACACT CAATTCCGAGCGCCGAGTGCACCCAAACGCCATGCTTGTGTCCAACACAA CTTCAACATCAGGCTCATCCTGAGTTCAACTACGAATACGGGAGGAGAGT GCTCAACGGTATCTTGGACGCCGACGTCAAGCAAGGACGTATCACTCACG AAATGGCAATTAGCCTTAAAGATCAGGTCAAAAGCAAATGAATGCCTACC GGCCTCGATCCGTGCTCAGCAGTCAGCGCAAAACTTGGATATTCGACGGT AGATTCCAAGCCTTGATCCGTCAACTACTATTGTTGGGCGAGCTAATTTG AACTCCAGTACGCGCATTGAACTTGCTCTTCATCCGCAGATACCAGTATG TACATCTCGTACAACCAATGTTAGATTTGGTCTATCCCCGGGACGCCAGG GTGTAGGAGTGCGCCAACCTGCCGCGCTGGTACGGTGTCCCGTAGCGTTA ACGAAAGTGGTCGTCCGTGTAGGTGCGATAACCGGGTCTCGACCCTGTTT CTGAAATTATGCGTTCGTTATTTGTCCCCCGTTTCTCGGCAGGCATCGTC TTGGGACCACAAAGAGTTTCCTGTGGCGCTGGAGCTCATGAGACGGCTCT TCGACCCGATCGTGCCTCAGTGCAATGGAGGGTCGAAGGCCCCATGACTA CAGACATACTCGGAGCACGTTTATACGTCCAGAGTCGTTGTGGCGTCGAC GAGGCTAGTTAATATTCAAGGGTTTAGTTGTGAGTTAGAAGCAAATCCAC AGCCAGGCTACGTACCAGACGATGACGTTACCTCTTTAGCGCCCAAGACT GGTAGGAGGCTTTTAGATACGTGCTCAAGTGTGCACCAAAAGCGGCGAGA ACCCCTTTCATGGAGGGTGCTCGGCGTGGCCAATGTCTTCCCCTTAGTTT ATACCGGTACAGTTCGTCTGGAAGTGCCGAGGATGCCCCAACGGCGGATG AGAACGGAAAGCTGTCGAAGTGTGGGTGGCCGGCGCATGCTCTGCTATTA TTTCTGTGGCGACCTTTCTGAATATCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74807:2..1830-

>mRNA_H-elongata_contig74807.15159.1 ID=mRNA_H-elongata_contig74807.15159.1|Name=mRNA_H-elongata_contig74807.15159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig74807:2..1830- (Himanthalia elongata Himel1 dioecious)
ATGGCCAAGGCACTGGGCGGGCTTGTTTGCGCTCGAAATGGACCCCTTAG
ACATTACGCTCTCCAGGAGAGCAAACTTCTGGCGACTCCCAAGGAATCAA
CAGCTGCGGAGGTGATATCGGCTGCTATCGCGACCGTTACGTGGAACGAG
GGAAGCGGTCTCGCACCCTCGAGACGGCATGATGGTTTTCCAGAAAAAGA
ACGACCACGGCTGAAGCTCCTCTACCATCACAACGATGAGATGGCCAAGG
CACTGGGCGGGCTTGTTTGCGCTCGAAATGGACCCCTTAGACATTACGCT
CTCCAGGAGAGCAAACTTCTGGCGACTCCCAAGGAATCAACAGCTGCGGA
GGTGATATCGGCTGCTATCGCGACCGTTACGTGGAACGAGGGAAGCGGTC
TCGCACCCTCGAGACGGCATGATGGTTTTCCAGAAAAAGAACGACCACGG
CTGAAGCTCCTCTACCATCACAACGATGAGGTAATCAAACTCCCCCCGGG
TGCTACCAACATCTCGACCTCAAGGCATTGCCTGGTACACGGAATGATCA
TGGCGACTGCTGTCGAACCAAAAGGACGACCAAGACCGAGCCTTCTCACA
TTTCAGGTAATCAAACTCCCCCCGGGTGCTACCAACATCTCGACCTCAAG
GCATTGCCTGGTACACGGAATGATCATGGCGACTGCTGTCGAACCAAAAG
GACGACCAAGACCGAGCCTTCTCACATTTCAGGCTCATCCTGAGTTCAAC
TACGAATACGGGAGGAGAGTGCTCAACGGTATCTTGGACGCCGACGTCAA
GCAAGGACGTATCACTCACGAAATGGCAATTAGCCTTAAAGATCAGGCTC
ATCCTGAGTTCAACTACGAATACGGGAGGAGAGTGCTCAACGGTATCTTG
GACGCCGACGTCAAGCAAGGACGTATCACTCACGAAATGGCAATTAGCCT
TAAAGATCAGGCATCGTCTTGGGACCACAAAGAGTTTCCTGTGGCGCTGG
AGCTCATGAGACGGCTCTTCGACCCGATCGTGCCTCAGTGCAATGGAGGG
TCGAAGGCCCCATGAGCATCGTCTTGGGACCACAAAGAGTTTCCTGTGGC
GCTGGAGCTCATGAGACGGCTCTTCGACCCGATCGTGCCTCAGTGCAATG
GAGGGTCGAAGGCCCCATGA
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