mRNA_H-elongata_contig74762.15154.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74762.15154.1
Unique NamemRNA_H-elongata_contig74762.15154.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 7.550e-59
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRV--IMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LPIRWAE+GTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEIISVLDLTE ILSRFGFDRRV  IMLSTRPEKSVGTDEIW+LATEGL+ AL RKGWDY+V
Sbjct:  389 RHLPIRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIISVLDLTEAILSRFGFDRRVYQIMLSTRPEKSVGTDEIWDLATEGLKAALERKGWDYSV 496
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S2G206_9STRA (Threonine--tRNA ligase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G206_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.550e-57
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    7 LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDY 312
            LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+ DEI+ VLDLTE ILSRFGF    +MLSTRP+KSVG+D+IW+ ATE L+GAL RKGWDY
Sbjct:    1 LPKRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLTDEIVGVLDLTESILSRFGFTEYQVMLSTRPDKSVGSDDIWDAATEALKGALERKGWDY 102
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S1GIN9_CYCTE (Threonine--tRNA ligase (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIN9_CYCTE)

HSP 1 Score: 187 bits (474), Expect = 1.240e-56
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R LPIRW ELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ++DEI+ VLDL E ILSRFGF++  +MLSTRPEKSVG+D+IWE AT GL GAL+ KGWDYTV
Sbjct:   57 RELPIRWGELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQDEIVGVLDLAEKILSRFGFNKYDVMLSTRPEKSVGSDDIWEAATAGLEGALKAKGWDYTV 162
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: B5Y5F7_PHATC (Threonine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5F7_PHATC)

HSP 1 Score: 186 bits (471), Expect = 2.640e-53
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ++DEI+ VLDLTE ILSRFGFD+  +MLSTRPEKSVG+DEIW+ AT  L GAL+ KGWDY V
Sbjct:  379 RDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQDEIVGVLDLTETILSRFGFDKYDVMLSTRPEKSVGSDEIWDAATVALEGALKVKGWDYNV 484
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A1Z5K8X1_FISSO (Threonine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X1_FISSO)

HSP 1 Score: 185 bits (470), Expect = 3.140e-53
Identity = 85/106 (80.19%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEI+ VLDLTE ILSRFGFD+  IMLST+PEK+VG+D+IWE AT+ L GAL++KGW+Y V
Sbjct:  373 RDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIVGVLDLTERILSRFGFDKYDIMLSTKPEKAVGSDDIWEAATKALEGALKKKGWEYGV 478
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S0D919_9EUKA (Threonine--tRNA ligase n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D919_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 6.340e-53
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLP Q+EDE++ VLDLTE ILSRFGFD   I LSTRPEKSVG+D+IW+ A   LRGAL+RKGWD+ V
Sbjct:  275 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPNQLEDELVGVLDLTESILSRFGFDNYEINLSTRPEKSVGSDDIWDKAETALRGALKRKGWDFAV 380
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S4MFY9_9EUKA (Threonine--tRNA ligase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MFY9_9EUKA)

HSP 1 Score: 179 bits (453), Expect = 1.080e-52
Identity = 82/106 (77.36%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LP+RW ELGTVYRYERSGTLHGL RVRGFTQDDAHIFCLPEQ+ DEI+ VLDLTE IL+RFGF    +MLSTRPEKSVG+D+IWE AT+ L+ AL RKGWDY V
Sbjct:  118 RDLPLRWGELGTVYRYERSGTLHGLFRVRGFTQDDAHIFCLPEQLSDEILDVLDLTETILTRFGFSEYEVMLSTRPEKSVGSDDIWEKATDALKDALGRKGWDYAV 223
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S1VGN3_9STRA (Threonine--tRNA ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGN3_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.240e-51
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHI+CLP Q+++EI++VLDLTE ILSRFGFD+  +MLSTRPEKSVG DEIW+ AT  L+GAL  KGWDY+V
Sbjct:  399 RDLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIYCLPSQLQEEIVAVLDLTEGILSRFGFDQYDVMLSTRPEKSVGGDEIWDAATVALKGALVAKGWDYSV 504
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S2V1W5_9STRA (Threonine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W5_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.570e-51
Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEI+ V DL E ILS+FGF +  IMLSTRPEKSVG D+IW +ATE L+GAL RKGW Y +
Sbjct:  373 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIVGVCDLVETILSKFGFSKYEIMLSTRPEKSVGDDQIWGMATEALKGALDRKGWSYGI 478
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BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Match: A0A7S2S854_9STRA (Threonine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S854_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.090e-51
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRKGWDYTV 318
            R+LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ++ EI+ VL LTE IL+RFGFD+  IMLSTRPEKSVG+D+IW+ AT  L GAL  KGWDYT+
Sbjct:  388 RDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQSEIVDVLSLTEQILTRFGFDKYEIMLSTRPEKSVGSDKIWDTATAALEGALDAKGWDYTI 493
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74762.15154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBI8_9PHAE7.550e-5989.81Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7S2G206_9STRA5.550e-5781.37Threonine--tRNA ligase (Fragment) n=1 Tax=Florenci... [more]
A0A7S1GIN9_CYCTE1.240e-5681.13Threonine--tRNA ligase (Fragment) n=1 Tax=Cyclopho... [more]
B5Y5F7_PHATC2.640e-5381.13Threonine--tRNA ligase n=1 Tax=Phaeodactylum trico... [more]
A0A1Z5K8X1_FISSO3.140e-5380.19Threonine--tRNA ligase n=2 Tax=Fistulifera solaris... [more]
A0A7S0D919_9EUKA6.340e-5380.19Threonine--tRNA ligase n=2 Tax=Amorphochlora amoeb... [more]
A0A7S4MFY9_9EUKA1.080e-5277.36Threonine--tRNA ligase n=1 Tax=Prymnesium polylepi... [more]
A0A7S1VGN3_9STRA1.240e-5179.25Threonine--tRNA ligase n=1 Tax=Grammatophora ocean... [more]
A0A7S2V1W5_9STRA1.570e-5179.25Threonine--tRNA ligase n=1 Tax=Fibrocapsa japonica... [more]
A0A7S2S854_9STRA2.090e-5178.30Threonine--tRNA ligase n=1 Tax=Eucampia antarctica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74762contigH-elongata_contig74762:122..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue3e-45
Seed eggNOG ortholog2850.Phatr33493
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Threonyl and Alanyl tRNA synthetase second additional domain
EggNOG OGs2XAYQ@2836,COG0441@1,KOG1637@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.8052294-CDS-H-elongata_contig74762:121..3281622931151.8052294-CDS-H-elongata_contig74762:121..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74762 122..328 +
1691679719.4584177-CDS-H-elongata_contig74762:121..3281691679719.4584177-CDS-H-elongata_contig74762:121..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74762 122..328 +
1622931151.8421066-CDS-H-elongata_contig74762:1054..11651622931151.8421066-CDS-H-elongata_contig74762:1054..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74762 1055..1165 +
1691679719.4699914-CDS-H-elongata_contig74762:1054..11651691679719.4699914-CDS-H-elongata_contig74762:1054..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74762 1055..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74762.15154.1prot_H-elongata_contig74762.15154.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74762 122..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74762.15154.1

>prot_H-elongata_contig74762.15154.1 ID=prot_H-elongata_contig74762.15154.1|Name=mRNA_H-elongata_contig74762.15154.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
RNLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEII
SVLDLTEDILSRFGFDRRVIMLSTRPEKSVGTDEIWELATEGLRGALRRK
GWDYTV
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mRNA from alignment at H-elongata_contig74762:122..1165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74762.15154.1 ID=mRNA_H-elongata_contig74762.15154.1|Name=mRNA_H-elongata_contig74762.15154.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-elongata_contig74762:122..1165+ (Himanthalia elongata Himel1 dioecious)
AGGAACCTTCCGATCCGGTGGGCCGAGCTTGGCACGGTGTATCGCTACGA
GCGCAGCGGGACGCTCCACGGCCTCATGCGCGTGCGAGGGTTCACTCAAG
ACGACGCCCACATCTTCTGTCTGCCGGAGCAAGTGGAAGACGAAATCATC
TCCGTGCTGGACCTGACGGAAGATATCCTCAGCCGCTTCGGCTTCGACAG
GCGAGTCGTGATCTCATTACTACTGCTACTATTTATAGTGATAAGTTATG
ATGATGATGATGATGATGGTCATAGAGGGAGTCCTTATTCCTGCTAGAGA
TTATTTGTTTGATGGTGCCTAGTTTCGTCAGTTCCGTGTTACGTCATTGC
AAGGGAAGACACTCGACGTTCCCACTAACACTTGGATATAGTATAGTTAA
TAATATAATAGTATAATCTACCGGTGCCATTATGTGAAGACTGATTTCCG
GTAGGCAGGCAATAAATACTGCCATATTATATAGTACATACCAACACCTG
CTGCTCCCATAGTTGCTCTCGTACGCGTCTGTCATAAAAGCTCAGGCGGC
ACCGTCAACGACACCCACACCGCGAGCCCCATGTATCAAATTATTGCAAT
ATAAAGGGAAAACACGCCTCCAAATACAAAGCGTTCGACCCCCCCCCCTA
TATTTATTGATAGATGCATTATTTTGTGCTTAATGTCCGCCCGCCGACGC
CACTTCGACGTGTATAGCATTTTGCCTCGCCTAGCGCTATATCTCGCCCT
CCTGTAGCGTCTGGTTCGTTCGATTGAGGCGCTTCAAGCACTTGAGGCAC
TTCTATACATAGCTACACGGGTAGACGTAAGCTATAGCGAATACAAACTA
CAAACTTATCGATCAACAGTGTAATTTGAATGTGTGCGCGAATTTGACGG
TTCCGAGATCATGTCGTTGGTGACAGGTACGAGATCATGCTGTCCACGAG
GCCAGAAAAGTCGGTGGGAACGGACGAAATCTGGGAATTAGCCACGGAGG
GTCTCAGGGGAGCGCTCAGGCGTAAGGGGTGGGATTACACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig74762:122..1165+

>mRNA_H-elongata_contig74762.15154.1 ID=mRNA_H-elongata_contig74762.15154.1|Name=mRNA_H-elongata_contig74762.15154.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig74762:122..1165+ (Himanthalia elongata Himel1 dioecious)
AGGAACCTTCCGATCCGGTGGGCCGAGCTTGGCACGGTGTATCGCTACGA
GCGCAGCGGGACGCTCCACGGCCTCATGCGCGTGCGAGGGTTCACTCAAG
ACGACGCCCACATCTTCTGTCTGCCGGAGCAAGTGGAAGACGAAATCATC
TCCGTGCTGGACCTGACGGAAGATATCCTCAGCCGCTTCGGCTTCGACAG
GCGAGTCAGGAACCTTCCGATCCGGTGGGCCGAGCTTGGCACGGTGTATC
GCTACGAGCGCAGCGGGACGCTCCACGGCCTCATGCGCGTGCGAGGGTTC
ACTCAAGACGACGCCCACATCTTCTGTCTGCCGGAGCAAGTGGAAGACGA
AATCATCTCCGTGCTGGACCTGACGGAAGATATCCTCAGCCGCTTCGGCT
TCGACAGGCGAGTCATCATGCTGTCCACGAGGCCAGAAAAGTCGGTGGGA
ACGGACGAAATCTGGGAATTAGCCACGGAGGGTCTCAGGGGAGCGCTCAG
GCGTAAGGGGTGGGATTACACGGTGATCATGCTGTCCACGAGGCCAGAAA
AGTCGGTGGGAACGGACGAAATCTGGGAATTAGCCACGGAGGGTCTCAGG
GGAGCGCTCAGGCGTAAGGGGTGGGATTACACGGTG
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