mRNA_H-elongata_contig74740.15152.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI) HSP 1 Score: 333 bits (854), Expect = 1.190e-100 Identity = 182/310 (58.71%), Postives = 223/310 (71.94%), Query Frame = 1
Query: 16 KLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWLYAS----------GKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAA 915
+LLP LV+SLGGPNAN+PR++A AA ALITFCNP+R+ EWLYA+ G +L SL L+ S S+VVREEALTA GC A+ A TD LRGKAMEAIALMG A GLE FR+DAHQVI++L++EQ RDP+NPQSTY L SL RMAGVL EFLPYL +AV PLL LS++AEIK S+ + A++ELE GLT + +D+RG+GRQ+FG+NTSLMQAKESAC+ L+QYTEDLG FA +A+ TLAVV+PNL PRNA+ VQV+S+AIVP+LV +A RAA
Sbjct: 413 ELLPTLVESLGGPNANMPRLEAAAAGALITFCNPERLSAEWLYAATPGRLGGEAVGLAMLRSLSGLVTGSSSVVVREEALTAVGCAAREILSATAXXXXXXXXXXXXXAAPQDTDLLRGKAMEAIALMGQAVGLEVFREDAHQVIRLLLNEQGMVARDPANPQSTYTLQSLARMAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDA-ALAKDELEAEGLTAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAETLAVVIPNLGPRNAIGVQVISSAIVPKLVALAEGRAA 721
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI) HSP 1 Score: 323 bits (829), Expect = 3.300e-98 Identity = 225/464 (48.49%), Postives = 277/464 (59.70%), Query Frame = 1
Query: 16 KLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWL-------------YASGKVLLESLRDLLRASPS--IVVREEALTAAGCVAQARSGR------GLEDLLIEIL------------ASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAAC-RDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAAAAAEHAGENASVGAAGGAAVALATEAQAMLVASMQSLCEVSRSRKRKRGGEGGIEGN---------QGEELGMAVDMEPACIAADSLSALLMQHCMPKKPSPVSLTPVVET---GVVAVLRNAARASMRR 1269
+LLP+LV+SLGGPNAN+PR+QA AASA+ TFC+P+R+R EWL A G VLL SL L+ S S + VREEA A G V Q L EI+ A+ TP+E+ D +RGKA+EAIALMG A GL+ FR+DAHQVI++L++EQK RDP+NPQSTY +L RMAGVLG EFLPYL +AV PLL LS AE+K+S A E E+AGLT + MD+RG G Q+FG+N SLMQAKESAC+ L+QYTEDLG FA +A+ T++VVLPNL P+N V VQVVSAA+VPRLVG+A+RRA A AV A EAQAML AS+ +L E+ + GGE Q EEL D EPAC+ ADSLS LL C + V + V VLR+ A AS+RR
Sbjct: 94 ELLPVLVESLGGPNANMPRLQAAAASAITTFCDPERLRAEWLDEPAGPPGSRLGQEAVGLVLLRSLEGLVPPSGSSCVAVREEAWAALGVVCQVLGPEFGSFYGTFVPLAKEIIFAGATPTGPAAAAAATPSEDM--DAVRGKAVEAIALMGQAVGLDLFREDAHQVIRLLLNEQKKTVERDPANPQSTYTFQALARMAGVLGEEFLPYLSEAVTPLLAALSTAAEMKLSDAPDA-DAATLEFEDAGLTAMTMDLRGAGPQVFGVNNSLMQAKESACKALYQYTEDLGEGFAPHAAATMSVVLPNLGPQNPVAVQVVSAALVPRLVGLAARRAEAXXXXXXXXXXX------AVEWACEAQAMLDASVDALTEMV----SRLGGESXXXXXXXXXXXXSAQQEELFEKGDQEPACVVADSLSNLLEGRCSDGGDGAAGVLRVSDERLLSTVTVLRDVAAASIRR 544
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.650e-48 Identity = 129/270 (47.78%), Postives = 161/270 (59.63%), Query Frame = 1
Query: 505 MAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAAAAAEHAGENASVGAAGGAAVALATEAQAMLVASMQSLCEVSRSRKRKRGGEGGIEGNQGEELGMAVDMEPA--------CIAADSLSALLMQHC----MPKKPSPVSLTPVVETGVVAVLRNAARASMRRCEA 1278
MAGVL EFLPYL +AV PLL LS++AEIK S+ + A++ELE GLT + +D+RG+GRQ+FG+NTSLMQAKESAC+ L+QYTEDLG FA +A+ TLAVV+PNL PRNA+ VQV+S+AIVP+LV +A RRAA A A GA EAQAML A++ +L E R GG G EP C+AAD+LS LL C +KPS + L+ V LRN A AS+ R A
Sbjct: 1 MAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDA-TLAKDELEAEGLTAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAETLAVVIPNLGPRNAIGVQVISSAIVPKLVALAERRAAEAV-----------AAGAGAKEVQEAQAMLDAAVDALTE------RLSGGSGNDCAQXXXXXXXXXXXEPLERRDQERQCVAADALSDLLEGRCGGGTQGQKPSVIRLSDERLLKTVTGLRNVAAASIGRTRA 252
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A5XEM2_MEDTR (Importin beta-3, putative n=8 Tax=IRL clade TaxID=2233839 RepID=A5XEM2_MEDTR) HSP 1 Score: 117 bits (294), Expect = 1.200e-24 Identity = 93/284 (32.75%), Postives = 151/284 (53.17%), Query Frame = 1
Query: 67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVA---QARSGRGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMA 900
PRVQA AASA++ F C PD + P Y G ++ L LL++ +V +E ALTA VA Q + + + ++ + A A + LR KAME I+L+G A G E FRDDA QV+ +L+S Q++ D +P ++Y L + R+ LG +FLPY+ + PLLQ L ++ S+TS S A + ++ + + + G + GI TS+++ K +AC +L Y ++L F + + + ++P L EV+ +A+ +P L+ A
Sbjct: 478 PRVQAHAASAVLNFTENCTPDILVP---YLDG--IVSKLLVLLQSGKQMV-QEGALTALASVADSSQEKFQKYYDAVIPYLKAILLNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQL-DSDDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDV---SITSADSDAEFDEDDDSIETITL-----GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSA 746
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A024G4G4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4G4_9STRA) HSP 1 Score: 115 bits (287), Expect = 9.520e-24 Identity = 80/260 (30.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 64 IPRVQAVAASALITFCNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE---DLLIEILAST-TPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSL--DAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLP 825
IPR++A+AASA+I +C+P+ + +++ + LL++L +++ P V+E+A+TA VA+ G G + D+ I + + A LRGK+ME IAL+G A G + F +DA +V++ L+ Q+ + P+ Y S R+ VLG +F+PYL + PL+ + D I ++ A L++ + ++ +R +Q INTS ++ K +AC +L+Q DL AF Y + V++P
Sbjct: 460 IPRIRALAASAVINYCDPNVCKAKYVLPHAQSLLQALFHVIQNCPR-PVQEQAMTAIANVAKV-IGAGFDAYYDIFIPVAKNVLVHAIGSEFSLLRGKSMETIALIGQAVGKDRFLNDAREVMETLLQVQRTGALN--GPEVLYVTQSCVRIGSVLGNDFVPYLQHVIPPLIAQAQIKPDVHIYTPAIGDPEEDAENTLDDDDVMIIQ--IRDNEKQQVRINTSALEDKTNACNMLYQCALDLKGAFYPYVDQVAQVMIP 713
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A2K3N7Y6_TRIPR (Importin-5-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N7Y6_TRIPR) HSP 1 Score: 112 bits (279), Expect = 1.160e-23 Identity = 93/283 (32.86%), Postives = 149/283 (52.65%), Query Frame = 1
Query: 70 RVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE--DLLIEIL-ASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMA 900
RVQA AASA++ F C PD + P Y G ++ L LL+ +V +E ALTA VA + + + D++I L A A + LR KAME I+L+G A G FRDDA QV+ +L+S Q++ D +P ++Y L + R+ LG +FLPY+ + PLLQ L ++ S+TS S A + ++ + + + G + GI TS+++ K +AC +L Y ++L F + + + ++P L EV+ +A+ +P L+ A
Sbjct: 69 RVQAHAASAVLNFTENCTPDILIP---YLDG--IVSKLLVLLQGGKQMV-QEGALTALASVADSSQEKFEKYYDVVIPYLKAILMNANDKSNRMLRAKAMECISLVGMAVGKAKFRDDAKQVMDVLMSLQQSQL-DADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDV---SITSTDSDAEFDEDDDSIETITL-----GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSA 336
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: V4T8T8_CITCL (Importin N-terminal domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=V4T8T8_CITCL) HSP 1 Score: 114 bits (285), Expect = 1.700e-23 Identity = 92/298 (30.87%), Postives = 154/298 (51.68%), Query Frame = 1
Query: 16 KLLPLLVQSLGGPNANIPRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSG---RGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
+LLP LV ++ + PRVQA AASA++ F C PD + P Y G ++ L LL+ +V +E ALTA VA + G + + ++ + A A + LR K+ME I+L+G A G + FRDDA QV+++L+S Q + + +P ++Y L + R+ LG EF+PY+ + PLLQ L ++ ++S S + E+ +T +G + GI TS+++ K +AC +L Y ++L F + + ++P L EV+ + + +P L+
Sbjct: 460 RLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTP---YLDG--IVSKLLVLLQNGKQMV-QEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM-EADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTIT--------LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 740
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A4S4EKE0_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4EKE0_CAMSI) HSP 1 Score: 114 bits (284), Expect = 2.290e-23 Identity = 91/284 (32.04%), Postives = 144/284 (50.70%), Query Frame = 1
Query: 67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGR------GLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
PRVQA AASA++ F C PD + P GK+L+ L + +V+E ALTA VA + + L IL + T N LR KAME I+L+G A G E FRDDA QV+++L+S Q + + +P ++Y L + R+ LG +FLPY+ + PLLQ L ++ ++S S E++E+ M+ +G + GI TS+++ K +AC +L Y ++L F + + ++P L EV+ + + +P L+
Sbjct: 475 PRVQAHAASAVLNFSENCTPDILTPYLDGIVGKLLV------LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKTILVNATDKSNR---MLRAKAMECISLVGMAVGKEKFRDDAKQVMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSD-----NEIDESD--DESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A4P9XV56_9FUNG (Armadillo-type protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XV56_9FUNG) HSP 1 Score: 113 bits (283), Expect = 2.960e-23 Identity = 88/290 (30.34%), Postives = 140/290 (48.28%), Query Frame = 1
Query: 55 NANIPRVQAVAASALITFCNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE------DLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASR 906
+A PRVQ AA+AL+ FC + E L + E L LL + ++E+A+T +A + R ++ +L+ +LA E LRGKA+E L+ A G + F A Q+I ++I Q A+ D +PQS Y L++ R+ VLGA+F PYL + + PL+ L + + + E++E + GI Q FGI T++++ K +A + Y +LGAAF Y + L VLP L V+ +A ++P L+ A +
Sbjct: 468 DAGQPRVQTHAAAALVNFC--EAASKEMLEPYMDTMFEKLMALLNTG-KMYIQEQAITTIATLADSAQDRFVKFYGVIMPMLMNVLAQAATKEFR---MLRGKALECATLIALAVGKDVFAAHAPQLIALMIQTQ-ASIADSDDPQSYYLLHAWARICKVLGADFAPYLQEVMPPLMHSAQLKPDFTIID-------SEEDVESKYSAEDGWEFVGIDGQQFGIKTTVLEEKCAAVEMFVCYARELGAAFQPYVGQVLETVLPLLKFYFHEGVRFAAATVLPMLINCAKQ 743
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: UPI001FB04C7A (importin-5-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB04C7A) HSP 1 Score: 113 bits (283), Expect = 3.070e-23 Identity = 95/284 (33.45%), Postives = 145/284 (51.06%), Query Frame = 1
Query: 67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGR------GLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
PRVQA AASA++ F C PD + P Y G V L LL+ +V +E ALTA VA + + L IL + T N LR KAME I+L+G A G E FRDDA QV+++L+S Q + + +P ++Y L + R+ LG +FLPY+ + PLLQ L ++ +SS+ S EL+E+ +E +G + GI TS+++ K +AC +L Y ++L F + + ++P L EV+ + + +P L+
Sbjct: 475 PRVQAHAASAVLNFSENCTPDILTP---YLDGMV--NKLLVLLQNGKQMV-QEGALTALASVADSSQEHFQNYYDTVMPYLKTILVNATDKSNR---MLRAKAMECISLVGMAVGKEKFRDDAKQVMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTISSLDSD-----NELDESDDDSMETIT--LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPDLL 741 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74740.15152.1 >prot_H-elongata_contig74740.15152.1 ID=prot_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=430bp LLSTPKLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWLYASback to top mRNA from alignment at H-elongata_contig74740:323..3037+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74740.15152.1 ID=mRNA_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2715bp|location=Sequence derived from alignment at H-elongata_contig74740:323..3037+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74740:323..3037+ >mRNA_H-elongata_contig74740.15152.1 ID=mRNA_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2580bp|location=Sequence derived from alignment at H-elongata_contig74740:323..3037+ (Himanthalia elongata Himel1 dioecious)back to top |