mRNA_H-elongata_contig74740.15152.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74740.15152.1
Unique NamemRNA_H-elongata_contig74740.15152.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 1.190e-100
Identity = 182/310 (58.71%), Postives = 223/310 (71.94%), Query Frame = 1
Query:   16 KLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWLYAS----------GKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAA 915
            +LLP LV+SLGGPNAN+PR++A AA ALITFCNP+R+  EWLYA+          G  +L SL  L+  S S+VVREEALTA GC A+                    A    TD LRGKAMEAIALMG A GLE FR+DAHQVI++L++EQ    RDP+NPQSTY L SL RMAGVL  EFLPYL +AV PLL  LS++AEIK S+     + A++ELE  GLT + +D+RG+GRQ+FG+NTSLMQAKESAC+ L+QYTEDLG  FA +A+ TLAVV+PNL PRNA+ VQV+S+AIVP+LV +A  RAA
Sbjct:  413 ELLPTLVESLGGPNANMPRLEAAAAGALITFCNPERLSAEWLYAATPGRLGGEAVGLAMLRSLSGLVTGSSSVVVREEALTAVGCAAREILSATAXXXXXXXXXXXXXAAPQDTDLLRGKAMEAIALMGQAVGLEVFREDAHQVIRLLLNEQGMVARDPANPQSTYTLQSLARMAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDA-ALAKDELEAEGLTAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAETLAVVIPNLGPRNAIGVQVISSAIVPKLVALAEGRAA 721          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 3.300e-98
Identity = 225/464 (48.49%), Postives = 277/464 (59.70%), Query Frame = 1
Query:   16 KLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWL-------------YASGKVLLESLRDLLRASPS--IVVREEALTAAGCVAQARSGR------GLEDLLIEIL------------ASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAAC-RDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAAAAAEHAGENASVGAAGGAAVALATEAQAMLVASMQSLCEVSRSRKRKRGGEGGIEGN---------QGEELGMAVDMEPACIAADSLSALLMQHCMPKKPSPVSLTPVVET---GVVAVLRNAARASMRR 1269
            +LLP+LV+SLGGPNAN+PR+QA AASA+ TFC+P+R+R EWL              A G VLL SL  L+  S S  + VREEA  A G V Q               L  EI+            A+ TP+E+   D +RGKA+EAIALMG A GL+ FR+DAHQVI++L++EQK    RDP+NPQSTY   +L RMAGVLG EFLPYL +AV PLL  LS  AE+K+S        A  E E+AGLT + MD+RG G Q+FG+N SLMQAKESAC+ L+QYTEDLG  FA +A+ T++VVLPNL P+N V VQVVSAA+VPRLVG+A+RRA A                 AV  A EAQAML AS+ +L E+      + GGE               Q EEL    D EPAC+ ADSLS LL   C         +  V +      V VLR+ A AS+RR
Sbjct:   94 ELLPVLVESLGGPNANMPRLQAAAASAITTFCDPERLRAEWLDEPAGPPGSRLGQEAVGLVLLRSLEGLVPPSGSSCVAVREEAWAALGVVCQVLGPEFGSFYGTFVPLAKEIIFAGATPTGPAAAAAATPSEDM--DAVRGKAVEAIALMGQAVGLDLFREDAHQVIRLLLNEQKKTVERDPANPQSTYTFQALARMAGVLGEEFLPYLSEAVTPLLAALSTAAEMKLSDAPDA-DAATLEFEDAGLTAMTMDLRGAGPQVFGVNNSLMQAKESACKALYQYTEDLGEGFAPHAAATMSVVLPNLGPQNPVAVQVVSAALVPRLVGLAARRAEAXXXXXXXXXXX------AVEWACEAQAMLDASVDALTEMV----SRLGGESXXXXXXXXXXXXSAQQEELFEKGDQEPACVVADSLSNLLEGRCSDGGDGAAGVLRVSDERLLSTVTVLRDVAAASIRR 544          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.650e-48
Identity = 129/270 (47.78%), Postives = 161/270 (59.63%), Query Frame = 1
Query:  505 MAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASRRAAAAAEHAGENASVGAAGGAAVALATEAQAMLVASMQSLCEVSRSRKRKRGGEGGIEGNQGEELGMAVDMEPA--------CIAADSLSALLMQHC----MPKKPSPVSLTPVVETGVVAVLRNAARASMRRCEA 1278
            MAGVL  EFLPYL +AV PLL  LS++AEIK S+     + A++ELE  GLT + +D+RG+GRQ+FG+NTSLMQAKESAC+ L+QYTEDLG  FA +A+ TLAVV+PNL PRNA+ VQV+S+AIVP+LV +A RRAA A            A GA      EAQAML A++ +L E      R  GG G                EP         C+AAD+LS LL   C      +KPS + L+       V  LRN A AS+ R  A
Sbjct:    1 MAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDA-TLAKDELEAEGLTAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAETLAVVIPNLGPRNAIGVQVISSAIVPKLVALAERRAAEAV-----------AAGAGAKEVQEAQAMLDAAVDALTE------RLSGGSGNDCAQXXXXXXXXXXXEPLERRDQERQCVAADALSDLLEGRCGGGTQGQKPSVIRLSDERLLKTVTGLRNVAAASIGRTRA 252          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A5XEM2_MEDTR (Importin beta-3, putative n=8 Tax=IRL clade TaxID=2233839 RepID=A5XEM2_MEDTR)

HSP 1 Score: 117 bits (294), Expect = 1.200e-24
Identity = 93/284 (32.75%), Postives = 151/284 (53.17%), Query Frame = 1
Query:   67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVA---QARSGRGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMA 900
            PRVQA AASA++ F   C PD + P   Y  G  ++  L  LL++   +V +E ALTA   VA   Q +  +  + ++  + A    A +     LR KAME I+L+G A G E FRDDA QV+ +L+S Q++   D  +P ++Y L +  R+   LG +FLPY+   + PLLQ   L  ++   S+TS  S A  + ++  +  + +     G +  GI TS+++ K +AC +L  Y ++L   F  +  +  + ++P L      EV+  +A+ +P L+  A
Sbjct:  478 PRVQAHAASAVLNFTENCTPDILVP---YLDG--IVSKLLVLLQSGKQMV-QEGALTALASVADSSQEKFQKYYDAVIPYLKAILLNANDKSNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQL-DSDDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDV---SITSADSDAEFDEDDDSIETITL-----GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSA 746          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A024G4G4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4G4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.520e-24
Identity = 80/260 (30.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query:   64 IPRVQAVAASALITFCNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE---DLLIEILAST-TPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSL--DAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLP 825
            IPR++A+AASA+I +C+P+  + +++    + LL++L  +++  P   V+E+A+TA   VA+   G G +   D+ I +  +    A       LRGK+ME IAL+G A G + F +DA +V++ L+  Q+    +   P+  Y   S  R+  VLG +F+PYL   + PL+    +  D  I   ++      A   L++  +  ++  +R   +Q   INTS ++ K +AC +L+Q   DL  AF  Y  +   V++P
Sbjct:  460 IPRIRALAASAVINYCDPNVCKAKYVLPHAQSLLQALFHVIQNCPR-PVQEQAMTAIANVAKV-IGAGFDAYYDIFIPVAKNVLVHAIGSEFSLLRGKSMETIALIGQAVGKDRFLNDAREVMETLLQVQRTGALN--GPEVLYVTQSCVRIGSVLGNDFVPYLQHVIPPLIAQAQIKPDVHIYTPAIGDPEEDAENTLDDDDVMIIQ--IRDNEKQQVRINTSALEDKTNACNMLYQCALDLKGAFYPYVDQVAQVMIP 713          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A2K3N7Y6_TRIPR (Importin-5-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N7Y6_TRIPR)

HSP 1 Score: 112 bits (279), Expect = 1.160e-23
Identity = 93/283 (32.86%), Postives = 149/283 (52.65%), Query Frame = 1
Query:   70 RVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE--DLLIEIL-ASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMA 900
            RVQA AASA++ F   C PD + P   Y  G  ++  L  LL+    +V +E ALTA   VA +   +  +  D++I  L A    A +     LR KAME I+L+G A G   FRDDA QV+ +L+S Q++   D  +P ++Y L +  R+   LG +FLPY+   + PLLQ   L  ++   S+TS  S A  + ++  +  + +     G +  GI TS+++ K +AC +L  Y ++L   F  +  +  + ++P L      EV+  +A+ +P L+  A
Sbjct:   69 RVQAHAASAVLNFTENCTPDILIP---YLDG--IVSKLLVLLQGGKQMV-QEGALTALASVADSSQEKFEKYYDVVIPYLKAILMNANDKSNRMLRAKAMECISLVGMAVGKAKFRDDAKQVMDVLMSLQQSQL-DADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDV---SITSTDSDAEFDEDDDSIETITL-----GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSA 336          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: V4T8T8_CITCL (Importin N-terminal domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=V4T8T8_CITCL)

HSP 1 Score: 114 bits (285), Expect = 1.700e-23
Identity = 92/298 (30.87%), Postives = 154/298 (51.68%), Query Frame = 1
Query:   16 KLLPLLVQSLGGPNANIPRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSG---RGLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
            +LLP LV ++   +   PRVQA AASA++ F   C PD + P   Y  G  ++  L  LL+    +V +E ALTA   VA +  G   +  + ++  + A    A +     LR K+ME I+L+G A G + FRDDA QV+++L+S Q +   +  +P ++Y L +  R+   LG EF+PY+   + PLLQ   L  ++ ++S  S +    E+     +T        +G +  GI TS+++ K +AC +L  Y ++L   F  +  +    ++P L      EV+  + + +P L+
Sbjct:  460 RLLPALVGAMD--DFQNPRVQAHAASAVLNFSENCTPDILTP---YLDG--IVSKLLVLLQNGKQMV-QEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM-EADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTIT--------LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 740          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A4S4EKE0_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4EKE0_CAMSI)

HSP 1 Score: 114 bits (284), Expect = 2.290e-23
Identity = 91/284 (32.04%), Postives = 144/284 (50.70%), Query Frame = 1
Query:   67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGR------GLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
            PRVQA AASA++ F   C PD + P      GK+L+      L  +   +V+E ALTA   VA +           +   L  IL + T   N     LR KAME I+L+G A G E FRDDA QV+++L+S Q +   +  +P ++Y L +  R+   LG +FLPY+   + PLLQ   L  ++ ++S  S       E++E+      M+   +G +  GI TS+++ K +AC +L  Y ++L   F  +  +    ++P L      EV+  + + +P L+
Sbjct:  475 PRVQAHAASAVLNFSENCTPDILTPYLDGIVGKLLV------LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKTILVNATDKSNR---MLRAKAMECISLVGMAVGKEKFRDDAKQVMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSD-----NEIDESD--DESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: A0A4P9XV56_9FUNG (Armadillo-type protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XV56_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 2.960e-23
Identity = 88/290 (30.34%), Postives = 140/290 (48.28%), Query Frame = 1
Query:   55 NANIPRVQAVAASALITFCNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLE------DLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMASR 906
            +A  PRVQ  AA+AL+ FC  +    E L      + E L  LL     + ++E+A+T    +A +   R ++       +L+ +LA     E      LRGKA+E   L+  A G + F   A Q+I ++I  Q A+  D  +PQS Y L++  R+  VLGA+F PYL + + PL+    L  +  +         + E++E         +  GI  Q FGI T++++ K +A  +   Y  +LGAAF  Y  + L  VLP L       V+  +A ++P L+  A +
Sbjct:  468 DAGQPRVQTHAAAALVNFC--EAASKEMLEPYMDTMFEKLMALLNTG-KMYIQEQAITTIATLADSAQDRFVKFYGVIMPMLMNVLAQAATKEFR---MLRGKALECATLIALAVGKDVFAAHAPQLIALMIQTQ-ASIADSDDPQSYYLLHAWARICKVLGADFAPYLQEVMPPLMHSAQLKPDFTIID-------SEEDVESKYSAEDGWEFVGIDGQQFGIKTTVLEEKCAAVEMFVCYARELGAAFQPYVGQVLETVLPLLKFYFHEGVRFAAATVLPMLINCAKQ 743          
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Match: UPI001FB04C7A (importin-5-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB04C7A)

HSP 1 Score: 113 bits (283), Expect = 3.070e-23
Identity = 95/284 (33.45%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   67 PRVQAVAASALITF---CNPDRMRPEWLYASGKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGR------GLEDLLIEILASTTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAACRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKVSSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRVLFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLV 891
            PRVQA AASA++ F   C PD + P   Y  G V    L  LL+    +V +E ALTA   VA +           +   L  IL + T   N     LR KAME I+L+G A G E FRDDA QV+++L+S Q +   +  +P ++Y L +  R+   LG +FLPY+   + PLLQ   L  ++ +SS+ S       EL+E+    +E     +G +  GI TS+++ K +AC +L  Y ++L   F  +  +    ++P L      EV+  + + +P L+
Sbjct:  475 PRVQAHAASAVLNFSENCTPDILTP---YLDGMV--NKLLVLLQNGKQMV-QEGALTALASVADSSQEHFQNYYDTVMPYLKTILVNATDKSNR---MLRAKAMECISLVGMAVGKEKFRDDAKQVMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTISSLDSD-----NELDESDDDSMETIT--LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFYPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPDLL 741          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74740.15152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE2_ECTSI1.190e-10058.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD05_ECTSI3.300e-9848.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE6_9PHAE2.650e-4847.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A5XEM2_MEDTR1.200e-2432.75Importin beta-3, putative n=8 Tax=IRL clade TaxID=... [more]
A0A024G4G4_9STRA9.520e-2430.77Importin N-terminal domain-containing protein n=1 ... [more]
A0A2K3N7Y6_TRIPR1.160e-2332.86Importin-5-like protein (Fragment) n=1 Tax=Trifoli... [more]
V4T8T8_CITCL1.700e-2330.87Importin N-terminal domain-containing protein n=3 ... [more]
A0A4S4EKE0_CAMSI2.290e-2332.04Uncharacterized protein n=1 Tax=Camellia sinensis ... [more]
A0A4P9XV56_9FUNG2.960e-2330.34Armadillo-type protein n=1 Tax=Thamnocephalis spha... [more]
UPI001FB04C7A3.070e-2333.45importin-5-like n=1 Tax=Impatiens glandulifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74740contigH-elongata_contig74740:323..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.9
Seed ortholog evalue2.8e-89
Seed eggNOG ortholog2880.D7FNE2
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1290
Cds size1290
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74740.15152.1prot_H-elongata_contig74740.15152.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74740 323..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.4828305-CDS-H-elongata_contig74740:322..6081622931151.4828305-CDS-H-elongata_contig74740:322..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 323..608 +
1691679719.387182-CDS-H-elongata_contig74740:322..6081691679719.387182-CDS-H-elongata_contig74740:322..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 323..608 +
1622931151.5091407-CDS-H-elongata_contig74740:1449..15771622931151.5091407-CDS-H-elongata_contig74740:1449..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 1450..1577 +
1691679719.397625-CDS-H-elongata_contig74740:1449..15771691679719.397625-CDS-H-elongata_contig74740:1449..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 1450..1577 +
1622931151.5614111-CDS-H-elongata_contig74740:1932..25911622931151.5614111-CDS-H-elongata_contig74740:1932..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 1933..2591 +
1691679719.4137707-CDS-H-elongata_contig74740:1932..25911691679719.4137707-CDS-H-elongata_contig74740:1932..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 1933..2591 +
1622931151.5783095-CDS-H-elongata_contig74740:2820..30371622931151.5783095-CDS-H-elongata_contig74740:2820..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 2821..3037 +
1691679719.4239426-CDS-H-elongata_contig74740:2820..30371691679719.4239426-CDS-H-elongata_contig74740:2820..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74740 2821..3037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74740.15152.1

>prot_H-elongata_contig74740.15152.1 ID=prot_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=430bp
LLSTPKLLPLLVQSLGGPNANIPRVQAVAASALITFCNPDRMRPEWLYAS
GKVLLESLRDLLRASPSIVVREEALTAAGCVAQARSGRGLEDLLIEILAS
TTPAENHGTDTLRGKAMEAIALMGAAAGLEAFRDDAHQVIKILISEQKAA
CRDPSNPQSTYALNSLTRMAGVLGAEFLPYLDDAVAPLLQGLSLDAEIKV
SSVTSGMSTAREELEEAGLTPLEMDVRGIGRQLFGINTSLMQAKESACRV
LFQYTEDLGAAFAAYASRTLAVVLPNLSPRNAVEVQVVSAAIVPRLVGMA
SRRAAAAAEHAGENASVGAAGGAAVALATEAQAMLVASMQSLCEVSRSRK
RKRGGEGGIEGNQGEELGMAVDMEPACIAADSLSALLMQHCMPKKPSPVS
LTPVVETGVVAVLRNAARASMRRCEARAAA
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mRNA from alignment at H-elongata_contig74740:323..3037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74740.15152.1 ID=mRNA_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2715bp|location=Sequence derived from alignment at H-elongata_contig74740:323..3037+ (Himanthalia elongata Himel1 dioecious)
CTTCTTTCCACACCAAAGCTGCTTCCTCTTCTGGTGCAGAGTCTGGGCGG GCCGAACGCCAACATTCCGCGCGTTCAGGCCGTGGCGGCTAGCGCGTTGA TCACATTTTGCAACCCGGATCGCATGCGACCCGAGTGGCTCTACGCTTCC GGGAAGGTTCTGCTGGAGTCGCTGCGTGATCTGTTGCGGGCAAGCCCGTC CATCGTGGTGCGAGAGGAGGCTCTGACCGCGGCCGGTTGCGTTGCACAGG CGAGAAGCGGGAGGGGTCTGGAGGATTTATTGATAGGTTGACTGATTAAT CTGAATATTATTAATTAGATAGGTTGACTGATTGGTTGGTTGGCTTACCG ATTGGCTCTATTGATTCCTTTGCCGCCGAAGAACCCATTTGACTCAACCT GAGTCAGCCATATATACCCCCCCCCCTCCAATCAAAAATCTATGTCAATA CCGCTACAGTAAGTGTACTACGAAGCTTAACGGGTGGTTGATGTCACATC TTGGTGACGTCACCCCGCAAACGCGCACCAATCAGGGACGGATCCGAAAT TGCTTCGAAAATCATCTTCAGGGTCTAATTATCTGGGAACAGATACTATC CTCCACCCGCGATCGGGGAGACGAATGGGAGAGGAGTTGCATGCTAGGAG GCGCCCGTCTTATAGCGGGATGGCGCGTAACCGTTGTGTCTCACGAAGTT TGTAACGTGGGTTGTTGTTGTTTTTTTGGGGGGGGTCCGGCGGCGTGTTT CTTGATATTTTAGGACACTAAACATACGCAGCCCGCGTGCGCCCCCGTCG ATACGCGGCCAAAATGAAGCGAAAATTAATAAAATAAAGAGGCGTTCTCT TCTCGCTGCTGCTGTTGATACTGATTCTCTACCACCTATGTGGTACTAGG GATGAAAAGCTTGGGATTTTTAGAGGATATTTGCTTTTTTTTTGAAAGGG GTGTGTGGAAATATAGCGTGCCCTCAATCTATCTCTCTATTCATCCCAAC ATAAATATTTTCGCCTAAGCGCACCGCACCGAGTAAACTAACAAACGGAC GGACGGACGAACGCACGAACAGGTCTTGGGGCCCGACTTTTGTTCTTTCT ATAGCATTTTCATGCCGCTTGCCAAAGAAATACTGGCCTCCACCACTCCC GCCGAGAACCACGGCACAGACACCCTCCGCGGCAAAGCCATGGAGGCAAT CGCCCTGATGGGTGCGGCCGCGGGACTCGAAGCGTTCCGCGACGATGCTC ATCAGGTGCGACATATCAATAGAAGAATTAATATTATGTTCGTGTGTGTG TGTGTGTAAATATATATTTATTAAAATGTACATAACCGCGCAATCCAACC CTGTCATGCGCGGTCATTATATGCTACTGTACTCGCATTGATCCTCCCAA TGGGGGTCAATGCGTATAGCCTAGAATGTATGTGTGTGTGTGTGTGTTTA TTAAATTACACATAACCGCGCAATCCGGCCCTGTCGTACTAGTCCTTCTA TGCCACTCCTATTGATCCTCCTAGGGGGGGATCAATGATACTGTGTATGT GTAAGTCGCCTTTTCTTGTCTGAATCGAGTGCTACGAATCGCAAATCACA CCTCGCCCAGGTCATCAAAATCCTCATCTCGGAGCAGAAGGCCGCTTGCC GAGATCCGAGCAACCCGCAGTCGACCTATGCCCTGAACTCCCTGACGCGA ATGGCGGGGGTCCTGGGTGCGGAGTTCCTCCCCTACCTCGACGACGCCGT AGCCCCCCTCCTGCAAGGGCTGTCGCTAGACGCGGAGATAAAGGTCTCTT CGGTAACGTCCGGTATGTCCACCGCCAGAGAGGAACTCGAGGAGGCCGGG CTCACACCCCTCGAGATGGACGTCCGGGGCATCGGGCGCCAGCTGTTCGG CATCAACACGAGCCTCATGCAGGCCAAGGAGTCCGCGTGCCGGGTGCTGT TCCAGTACACGGAGGACCTGGGAGCGGCATTCGCCGCCTACGCGAGTCGG ACGCTCGCGGTCGTGCTTCCCAACCTCAGCCCGCGCAACGCGGTCGAGGT GCAGGTGGTCAGCGCCGCGATCGTTCCGAGGCTCGTGGGCATGGCTAGTC GGCGGGCGGCGGCAGCGGCGGAACATGCAGGGGAGAACGCGTCGGTGGGA GCGGCGGGGGGGGCGGCGGTCGCTTTGGCGACCGAGGCACAGGCAATGCT GGTAGCGTCTATGCAGTCGCTATGCGAGGTTAGTCGTTCAAGGAAAAGAA AACGGGGAGGAGAGGGGGGGTATCATAACAGCCCCTTCCCGGAGACGATG AGCACAACCAAAACCTTGCGTGACAGGTTTGTATGATTTTTCGGAACGCA ACGTTTTTTTTCTGCTAGGGATTTCAAAATTTGTACCCGAAAGGGGCTGC TTTCATTATCCCCCCCACCCCCCGGACGTCGGGAGAAAATGTACAACATC CTCGCCTCCCGACCCCGACCCTTGTAAACCTGCTCAGGTCATCTCGAGGA TCGAAGGCAATCAGGGGGAGGAATTAGGGATGGCGGTCGACATGGAGCCC GCGTGCATCGCCGCCGACTCATTGTCGGCTCTCCTTATGCAGCACTGCAT GCCGAAAAAGCCTTCCCCGGTAAGCTTGACGCCCGTGGTAGAGACGGGAG TTGTCGCGGTGCTCCGCAACGCTGCGCGGGCGTCGATGCGCCGCTGCGAG GCGCGCGCGGCCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig74740:323..3037+

>mRNA_H-elongata_contig74740.15152.1 ID=mRNA_H-elongata_contig74740.15152.1|Name=mRNA_H-elongata_contig74740.15152.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2580bp|location=Sequence derived from alignment at H-elongata_contig74740:323..3037+ (Himanthalia elongata Himel1 dioecious)
CTTCTTTCCACACCAAAGCTGCTTCCTCTTCTGGTGCAGAGTCTGGGCGG
GCCGAACGCCAACATTCCGCGCGTTCAGGCCGTGGCGGCTAGCGCGTTGA
TCACATTTTGCAACCCGGATCGCATGCGACCCGAGTGGCTCTACGCTTCC
GGGAAGGTTCTGCTGGAGTCGCTGCGTGATCTGTTGCGGGCAAGCCCGTC
CATCGTGGTGCGAGAGGAGGCTCTGACCGCGGCCGGTTGCGTTGCACAGG
CGAGAAGCGGGAGGGGTCTGGAGGATTTATTGATAGCTTCTTTCCACACC
AAAGCTGCTTCCTCTTCTGGTGCAGAGTCTGGGCGGGCCGAACGCCAACA
TTCCGCGCGTTCAGGCCGTGGCGGCTAGCGCGTTGATCACATTTTGCAAC
CCGGATCGCATGCGACCCGAGTGGCTCTACGCTTCCGGGAAGGTTCTGCT
GGAGTCGCTGCGTGATCTGTTGCGGGCAAGCCCGTCCATCGTGGTGCGAG
AGGAGGCTCTGACCGCGGCCGGTTGCGTTGCACAGGCGAGAAGCGGGAGG
GGTCTGGAGGATTTATTGATAGAAATACTGGCCTCCACCACTCCCGCCGA
GAACCACGGCACAGACACCCTCCGCGGCAAAGCCATGGAGGCAATCGCCC
TGATGGGTGCGGCCGCGGGACTCGAAGCGTTCCGCGACGATGCTCATCAG
AAATACTGGCCTCCACCACTCCCGCCGAGAACCACGGCACAGACACCCTC
CGCGGCAAAGCCATGGAGGCAATCGCCCTGATGGGTGCGGCCGCGGGACT
CGAAGCGTTCCGCGACGATGCTCATCAGGTCATCAAAATCCTCATCTCGG
AGCAGAAGGCCGCTTGCCGAGATCCGAGCAACCCGCAGTCGACCTATGCC
CTGAACTCCCTGACGCGAATGGCGGGGGTCCTGGGTGCGGAGTTCCTCCC
CTACCTCGACGACGCCGTAGCCCCCCTCCTGCAAGGGCTGTCGCTAGACG
CGGAGATAAAGGTCTCTTCGGTAACGTCCGGTATGTCCACCGCCAGAGAG
GAACTCGAGGAGGCCGGGCTCACACCCCTCGAGATGGACGTCCGGGGCAT
CGGGCGCCAGCTGTTCGGCATCAACACGAGCCTCATGCAGGCCAAGGAGT
CCGCGTGCCGGGTGCTGTTCCAGTACACGGAGGACCTGGGAGCGGCATTC
GCCGCCTACGCGAGTCGGACGCTCGCGGTCGTGCTTCCCAACCTCAGCCC
GCGCAACGCGGTCGAGGTGCAGGTGGTCAGCGCCGCGATCGTTCCGAGGC
TCGTGGGCATGGCTAGTCGGCGGGCGGCGGCAGCGGCGGAACATGCAGGG
GAGAACGCGTCGGTGGGAGCGGCGGGGGGGGCGGCGGTCGCTTTGGCGAC
CGAGGCACAGGCAATGCTGGTAGCGTCTATGCAGTCGCTATGCGAGGTTA
GTCGTTCAAGGAAAAGAAAACGGGGAGGAGAGGGGGGGTCATCAAAATCC
TCATCTCGGAGCAGAAGGCCGCTTGCCGAGATCCGAGCAACCCGCAGTCG
ACCTATGCCCTGAACTCCCTGACGCGAATGGCGGGGGTCCTGGGTGCGGA
GTTCCTCCCCTACCTCGACGACGCCGTAGCCCCCCTCCTGCAAGGGCTGT
CGCTAGACGCGGAGATAAAGGTCTCTTCGGTAACGTCCGGTATGTCCACC
GCCAGAGAGGAACTCGAGGAGGCCGGGCTCACACCCCTCGAGATGGACGT
CCGGGGCATCGGGCGCCAGCTGTTCGGCATCAACACGAGCCTCATGCAGG
CCAAGGAGTCCGCGTGCCGGGTGCTGTTCCAGTACACGGAGGACCTGGGA
GCGGCATTCGCCGCCTACGCGAGTCGGACGCTCGCGGTCGTGCTTCCCAA
CCTCAGCCCGCGCAACGCGGTCGAGGTGCAGGTGGTCAGCGCCGCGATCG
TTCCGAGGCTCGTGGGCATGGCTAGTCGGCGGGCGGCGGCAGCGGCGGAA
CATGCAGGGGAGAACGCGTCGGTGGGAGCGGCGGGGGGGGCGGCGGTCGC
TTTGGCGACCGAGGCACAGGCAATGCTGGTAGCGTCTATGCAGTCGCTAT
GCGAGGTTAGTCGTTCAAGGAAAAGAAAACGGGGAGGAGAGGGGGGGATC
GAAGGCAATCAGGGGGAGGAATTAGGGATGGCGGTCGACATGGAGCCCGC
GTGCATCGCCGCCGACTCATTGTCGGCTCTCCTTATGCAGCACTGCATGC
CGAAAAAGCCTTCCCCGGTAAGCTTGACGCCCGTGGTAGAGACGGGAGTT
GTCGCGGTGCTCCGCAACGCTGCGCGGGCGTCGATGCGCCGCTGCGAGGC
GCGCGCGGCCGCAGATCGAAGGCAATCAGGGGGAGGAATTAGGGATGGCG
GTCGACATGGAGCCCGCGTGCATCGCCGCCGACTCATTGTCGGCTCTCCT
TATGCAGCACTGCATGCCGAAAAAGCCTTCCCCGGTAAGCTTGACGCCCG
TGGTAGAGACGGGAGTTGTCGCGGTGCTCCGCAACGCTGCGCGGGCGTCG
ATGCGCCGCTGCGAGGCGCGCGCGGCCGCA
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