prot_H-elongata_contig74672.15146.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74672.15146.1
Unique Nameprot_H-elongata_contig74672.15146.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
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BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.700e-40
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 0 
Query:    1 WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGV---TDLRSDLELGRLDLQLGDLIDCCSFRARSEYQRWFPLCTPRSSAEDPLLGA----EGGAGNIGGDVGRWAAATEK 115
            W S KA+VA APTWDR+Q  CEF VEA +ASGTLSL VFAEVGV   TDLRSD+E+GRLDLQLG LIDCCSFRARSEYQRW+PL  P    ED   GA      G+G  G D G WA A E+
Sbjct: 6760 WKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDSSGSGGGGSDGGTWATAMEQ 6881
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BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Match: A0A6H5KKT6_9PHAE (VPS13_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.800e-31
Identity = 73/119 (61.34%), Postives = 82/119 (68.91%), Query Frame = 0 
Query:    1 WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGV---TDLRSDLELGRLDLQLGDLIDCCSFRARSEYQ-RWFPLCTPRSSAEDPLLGAEGGAGNIGGDVGRWAAATEK 115
            W S KA+VA APTWDR+Q  CEF VEA +ASGTLSL VFAEVGV   TDLR+D+E+GRLDLQLG LIDCCSFRARSEYQ R      P  S+         G+G  G D G WA A E+
Sbjct:   29 WKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRADVEIGRLDLQLGGLIDCCSFRARSEYQARIVHSKGPEDSS---------GSGGGGSDGGTWATAMEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI1.700e-4065.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKT6_9PHAE1.800e-3161.34VPS13_C domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74672contigH-elongata_contig74672:535..1835 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74672.15146.1mRNA_H-elongata_contig74672.15146.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74672 535..1835 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74672.15146.1 ID=prot_H-elongata_contig74672.15146.1|Name=mRNA_H-elongata_contig74672.15146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGVTDLRSD
LELGRLDLQLGDLIDCCSFRARSEYQRWFPLCTPRSSAEDPLLGAEGGAG
NIGGDVGRWAAATEK
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