mRNA_H-elongata_contig74672.15146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74672.15146.1
Unique NamemRNA_H-elongata_contig74672.15146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.700e-40
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:    1 WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGV---TDLRSDLELGRLDLQLGDLIDCCSFRARSEYQRWFPLCTPRSSAEDPLLGA----EGGAGNIGGDVGRWAAATEK 345
            W S KA+VA APTWDR+Q  CEF VEA +ASGTLSL VFAEVGV   TDLRSD+E+GRLDLQLG LIDCCSFRARSEYQRW+PL  P    ED   GA      G+G  G D G WA A E+
Sbjct: 6760 WKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRSDVEIGRLDLQLGGLIDCCSFRARSEYQRWYPLSPPAHKTEDEQFGAGPEDSSGSGGGGSDGGTWATAMEQ 6881
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BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Match: A0A6H5KKT6_9PHAE (VPS13_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.800e-31
Identity = 73/119 (61.34%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    1 WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGV---TDLRSDLELGRLDLQLGDLIDCCSFRARSEYQ-RWFPLCTPRSSAEDPLLGAEGGAGNIGGDVGRWAAATEK 345
            W S KA+VA APTWDR+Q  CEF VEA +ASGTLSL VFAEVGV   TDLR+D+E+GRLDLQLG LIDCCSFRARSEYQ R      P  S+         G+G  G D G WA A E+
Sbjct:   29 WKSTKANVAAAPTWDRNQPVCEFKVEALEASGTLSLSVFAEVGVMGVTDLRADVEIGRLDLQLGGLIDCCSFRARSEYQARIVHSKGPEDSS---------GSGGGGSDGGTWATAMEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74672.15146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI1.700e-4065.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKT6_9PHAE1.800e-3161.34VPS13_C domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74672contigH-elongata_contig74672:535..1835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size346
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74672.15146.1prot_H-elongata_contig74672.15146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74672 535..1835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.7938278-CDS-H-elongata_contig74672:534..6511622931150.7938278-CDS-H-elongata_contig74672:534..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 535..651 -
1691679719.1447961-CDS-H-elongata_contig74672:534..6511691679719.1447961-CDS-H-elongata_contig74672:534..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 535..651 -
1622931150.8161228-CDS-H-elongata_contig74672:1310..14341622931150.8161228-CDS-H-elongata_contig74672:1310..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 1311..1434 -
1691679719.1547666-CDS-H-elongata_contig74672:1310..14341691679719.1547666-CDS-H-elongata_contig74672:1310..1434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 1311..1434 -
1622931150.836748-CDS-H-elongata_contig74672:1731..18351622931150.836748-CDS-H-elongata_contig74672:1731..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 1732..1835 -
1691679719.163013-CDS-H-elongata_contig74672:1731..18351691679719.163013-CDS-H-elongata_contig74672:1731..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74672 1732..1835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74672.15146.1

>prot_H-elongata_contig74672.15146.1 ID=prot_H-elongata_contig74672.15146.1|Name=mRNA_H-elongata_contig74672.15146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
WSSEKASVAPAPTWDRSQRACEFSVEAFDASGTLSLRVFAEVGVTDLRSD
LELGRLDLQLGDLIDCCSFRARSEYQRWFPLCTPRSSAEDPLLGAEGGAG
NIGGDVGRWAAATEK
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mRNA from alignment at H-elongata_contig74672:535..1835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74672.15146.1 ID=mRNA_H-elongata_contig74672.15146.1|Name=mRNA_H-elongata_contig74672.15146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1301bp|location=Sequence derived from alignment at H-elongata_contig74672:535..1835- (Himanthalia elongata Himel1 dioecious)
TGGAGCAGCGAGAAGGCCAGCGTTGCCCCCGCGCCGACGTGGGATCGTAG
CCAGCGCGCATGTGAATTCTCGGTGGAGGCGTTCGATGCTTCTGGGACGC
TGAGGTGTGTCGGTGGCAACGAGTGAGCGCTGCAGGCGGAATGAGGTGTA
AAAGACGGGAGTTCCGTGCCAGCCCCTTGTCACCGCTGCGGTCTCCGCAA
CGAACATGCTGCTCTGGATCACGGCAACTCCCGCATCTTCTTTTTATTTC
CTATGCGTCTCCCCTTAAAATAATCTTCTAGGCGTCGGAGGATTTTTTGC
GCGGATGGGCGGGGATTAAAGAGCAGATTTTTTTTTTTTTTAACATCGTC
ACAGTCACTGCTGCACGATCCTCCTCCTGTGTCTTGTTGTGTTATACGTA
GCCTTCGCGTCTTTGCGGAGGTGGGTGTGACCGACTTGCGATCGGACTTG
GAGCTGGGACGCCTGGACCTTCAACTCGGGGACCTGATCGACTGCTGCTC
ATTTCGCGCACGATCGGAATATCAGGTGCGCGTTCCGACGTTTAATTGAC
CGATGTGACGTTTGGAATGCCGACGCAAGGTTTAATTGGCCGATGTAGCG
TTTTCATTGGTTGATGTAATGTTTGGAGAAACGATGCGACGTTTGATTGG
CCAATGCGGCGTTTGGAATGTAGATGCAATGTGTAATGTAGATTCGACGT
TTGATTAGGTGAGGCGATGTTTGATTAGTCGACGTGACGTTGGATTTATT
TGTCGATGCTACATTTGAAATGTAGATGCACCATTTAACGTAGATTGAAC
GTTTGATTAGGCGAGGCAACGTTTGATTAGTCGATGCGACGTTGGATTCG
CCGATATGGCGTTTGACTGGCCGATGCAGCGTTTGATTGGTCGATACAAC
GTTTGATTAGTCGAAGTGACGTTTGATTCACTGATGCGACGTACCTATCT
CGATGACTCGAGTAGCCAGTCGCGAAATTGATCGATAACAGCCAGCCTCC
TATGGATTCGCTCTCCTTCGCGTAGCAACCGATTTCCTCGCCCCTCTCCC
AGAATAACAACTCGCGTTTATTAATAGTGTTTACCGCATTTATTTGGAAA
GTACTTGTCTAACAAGTCAACGGTCCCGACCCCTACTGCCTAACGCATTT
GGGTTTCCAATCGCGATGCCTATTATCTTTCCAGCGTTGGTTTCCTCTGT
GCACCCCAAGGAGCAGCGCCGAAGACCCTCTCCTGGGCGCAGAAGGCGGA
GCTGGCAACATCGGCGGCGACGTCGGGCGATGGGCGGCCGCCACGGAGAA
G
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Coding sequence (CDS) from alignment at H-elongata_contig74672:535..1835-

>mRNA_H-elongata_contig74672.15146.1 ID=mRNA_H-elongata_contig74672.15146.1|Name=mRNA_H-elongata_contig74672.15146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig74672:535..1835- (Himanthalia elongata Himel1 dioecious)
TGGAGCAGCGAGAAGGCCAGCGTTGCCCCCGCGCCGACGTGGGATCGTAG
CCAGCGCGCATGTGAATTCTCGGTGGAGGCGTTCGATGCTTCTGGGACGC
TGAGTGGAGCAGCGAGAAGGCCAGCGTTGCCCCCGCGCCGACGTGGGATC
GTAGCCAGCGCGCATGTGAATTCTCGGTGGAGGCGTTCGATGCTTCTGGG
ACGCTGAGCCTTCGCGTCTTTGCGGAGGTGGGTGTGACCGACTTGCGATC
GGACTTGGAGCTGGGACGCCTGGACCTTCAACTCGGGGACCTGATCGACT
GCTGCTCATTTCGCGCACGATCGGAATATCAGCCTTCGCGTCTTTGCGGA
GGTGGGTGTGACCGACTTGCGATCGGACTTGGAGCTGGGACGCCTGGACC
TTCAACTCGGGGACCTGATCGACTGCTGCTCATTTCGCGCACGATCGGAA
TATCAGCGTTGGTTTCCTCTGTGCACCCCAAGGAGCAGCGCCGAAGACCC
TCTCCTGGGCGCAGAAGGCGGAGCTGGCAACATCGGCGGCGACGTCGGGC
GATGGGCGGCCGCCACGGAGAAGCGTTGGTTTCCTCTGTGCACCCCAAGG
AGCAGCGCCGAAGACCCTCTCCTGGGCGCAGAAGGCGGAGCTGGCAACAT
CGGCGGCGACGTCGGGCGATGGGCGGCCGCCACGGAGAAG
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