mRNA_H-elongata_contig119664.1515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119664.1515.1
Unique NamemRNA_H-elongata_contig119664.1515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: D7FYT5_ECTSI (40S ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT5_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 4.770e-52
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSM 282
            GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERR+DFVPEV A +  S+
Sbjct:    2 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAIEQESI 95
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A836CIS9_9STRA (40S ribosomal protein S17 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.390e-51
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGA 264
            GVRTKTVKKSAR IIEKYYSRLT+DFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEV A
Sbjct:    2 GVRTKTVKKSARVIIEKYYSRLTLDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSA 89
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A7S4SMK2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SMK2_9DINO)

HSP 1 Score: 165 bits (417), Expect = 9.260e-51
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGAND 270
            GVRTKTVKKSAR IIEKYYSRLT+DFHTNKRVCDEVAIIPSKRMRNKIAGF+THLMKRIQRGPVRGISLKLQEEERERR+DFVPEV A D
Sbjct:   12 GVRTKTVKKSARTIIEKYYSRLTLDFHTNKRVCDEVAIIPSKRMRNKIAGFITHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSALD 101
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: F0Y4Q4_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y4Q4_AURAN)

HSP 1 Score: 159 bits (403), Expect = 9.780e-49
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGAND 270
            GVRTKTVK+SAR I+EKYYSRL +DFHTNKRVCDEVA++PSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERR+DFVPEV A D
Sbjct:    2 GVRTKTVKRSARLIVEKYYSRLGVDFHTNKRVCDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSAID 91
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A4D9CUE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUE3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.460e-48
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVG 261
            GVRTKTVKKSAR IIEKYYSRLTMDFHTNKRV DEVA +PSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERRLDFVPEV 
Sbjct:    2 GVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVS 88
[Close]
BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A7S2SHA1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHA1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.020e-47
Identity = 81/98 (82.65%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSMLKRD 294
            GVRTKTVK+ +R I+EKYY RLT+DFHTNKRV DEVAIIPSKRMRNKIAGF THLMKRIQRGPVRGISLKLQEEERERRLDFVPEV A D    L  D
Sbjct:   10 GVRTKTVKRHSRMIVEKYYGRLTLDFHTNKRVVDEVAIIPSKRMRNKIAGFTTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSALDVEETLTVD 107
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A485KLT1_9STRA (Aste57867_8897 protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A485KLT1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.590e-47
Identity = 82/101 (81.19%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSM-LKRDTR 300
            GVRTKTVK+SA  IIEKYY+RLT+DF +NKRVCDEVAIIPSKRMRNKIAG++THLMKRIQRGPVRGISLKLQEEERERRLDFVPEV A +  ++ L +DTR
Sbjct:    2 GVRTKTVKRSAIQIIEKYYARLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAINTETIDLDQDTR 102
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BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: W7TDH0_9STRA (40s ribosomal protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDH0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.620e-47
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVG 261
            GVRTKTVKKSAR IIEKYYSRLTMDFHTNKRV DEVA +PSKRMRNKIAGFVTHLMKRIQ+GPVRGISLKLQEEERERRLDFVPEV 
Sbjct:    2 GVRTKTVKKSARVIIEKYYSRLTMDFHTNKRVVDEVAEVPSKRMRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERERRLDFVPEVS 88
[Close]
BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A067CK86_SAPPC (40S ribosomal protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CK86_SAPPC)

HSP 1 Score: 155 bits (392), Expect = 4.790e-47
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSM-LKRDTR 300
            GVRTKTVK+SA  IIEKYYSRLT+DF +NKRVCDEVAIIPSKRMRNKIAG++THLMKRIQRGPVRGISLKLQEEERERRLDFVPEV A +  ++ +  DTR
Sbjct:    2 GVRTKTVKRSAVQIIEKYYSRLTLDFDSNKRVCDEVAIIPSKRMRNKIAGYITHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVSAINTDAIEIDNDTR 102
[Close]
BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Match: A0A2V3J2T3_9FLOR (40S ribosomal protein S17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2T3_9FLOR)

HSP 1 Score: 155 bits (393), Expect = 5.210e-47
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    4 VRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAGFVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSM-LKRDTR 300
            VRTKTVKKSAR +IEKYYSRLT+DF TNKR+CDEVAIIPSKR+RNK+AGFVTHLM RIQ+GPVRGISLKLQEEERERR+DFVPEV A D   + +  DTR
Sbjct:    4 VRTKTVKKSARQVIEKYYSRLTLDFQTNKRICDEVAIIPSKRLRNKVAGFVTHLMTRIQKGPVRGISLKLQEEERERRMDFVPEVSAIDLEVIEVDNDTR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119664.1515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT5_ECTSI4.770e-5292.5540S ribosomal protein S17 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CIS9_9STRA5.390e-5196.5940S ribosomal protein S17 n=2 Tax=Tribonema minus ... [more]
A0A7S4SMK2_9DINO9.260e-5193.33Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
F0Y4Q4_AURAN9.780e-4988.89Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A4D9CUE3_9STRA9.460e-4893.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2SHA1_9STRA2.020e-4782.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485KLT1_9STRA3.590e-4781.19Aste57867_8897 protein n=8 Tax=Aphanomyces TaxID=1... [more]
W7TDH0_9STRA4.620e-4793.1040s ribosomal protein n=1 Tax=Nannochloropsis gadi... [more]
A0A067CK86_SAPPC4.790e-4781.1940S ribosomal protein n=4 Tax=Saprolegniaceae TaxI... [more]
A0A2V3J2T3_9FLOR5.210e-4780.0040S ribosomal protein S17 n=1 Tax=Gracilariopsis c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119664contigH-elongata_contig119664:1521..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D7FYT5
Preferred nameRPS17
KEGG koko:K02962,ko:K04324,ko:K06674,ko:K14807,ko:K20099
KEGG Pathwayko03010,ko04111,map03010,map04111
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG1383@1,KOG0187@2759
Ec32 ortholog description40S ribosomal protein S17
Ec32 orthologEc-19_002440.1
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03036,ko03041,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.685267-CDS-H-elongata_contig119664:1520..18201622929700.685267-CDS-H-elongata_contig119664:1520..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119664 1521..1820 +
1691679124.175053-CDS-H-elongata_contig119664:1520..18201691679124.175053-CDS-H-elongata_contig119664:1520..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119664 1521..1820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119664.1515.1prot_H-elongata_contig119664.1515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119664 1521..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119664.1515.1

>prot_H-elongata_contig119664.1515.1 ID=prot_H-elongata_contig119664.1515.1|Name=mRNA_H-elongata_contig119664.1515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
GVRTKTVKKSARAIIEKYYSRLTMDFHTNKRVCDEVAIIPSKRMRNKIAG
FVTHLMKRIQRGPVRGISLKLQEEERERRLDFVPEVGANDFHSMLKRDTR
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mRNA from alignment at H-elongata_contig119664:1521..1820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119664.1515.1 ID=mRNA_H-elongata_contig119664.1515.1|Name=mRNA_H-elongata_contig119664.1515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig119664:1521..1820+ (Himanthalia elongata Himel1 dioecious)
GGTGTCCGCACGAAGACCGTAAAGAAGTCGGCCCGAGCCATCATCGAGAA
GTACTACTCTCGGCTCACGATGGACTTTCACACGAACAAGCGTGTGTGTG
ACGAGGTTGCCATCATCCCGTCGAAGCGGATGCGGAACAAGATCGCTGGC
TTCGTTACCCACCTAATGAAGCGCATCCAGAGGGGGCCCGTGCGAGGAAT
TTCTCTCAAGCTCCAAGAAGAGGAACGGGAAAGGCGTTTGGACTTCGTTC
CCGAGGTGGGTGCTAACGATTTCCATAGTATGTTAAAAAGGGATACTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig119664:1521..1820+

>mRNA_H-elongata_contig119664.1515.1 ID=mRNA_H-elongata_contig119664.1515.1|Name=mRNA_H-elongata_contig119664.1515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig119664:1521..1820+ (Himanthalia elongata Himel1 dioecious)
GGTGTCCGCACGAAGACCGTAAAGAAGTCGGCCCGAGCCATCATCGAGAA
GTACTACTCTCGGCTCACGATGGACTTTCACACGAACAAGCGTGTGTGTG
ACGAGGTTGCCATCATCCCGTCGAAGCGGATGCGGAACAAGATCGCTGGC
TTCGTTACCCACCTAATGAAGCGCATCCAGAGGGGGCCCGTGCGAGGAAT
TTCTCTCAAGCTCCAAGAAGAGGAACGGGAAAGGCGTTTGGACTTCGTTC
CCGAGGTGGGTGCTAACGATTTCCATAGTATGTTAAAAAGGGATACTCGT
GGTGTCCGCACGAAGACCGTAAAGAAGTCGGCCCGAGCCATCATCGAGAA
GTACTACTCTCGGCTCACGATGGACTTTCACACGAACAAGCGTGTGTGTG
ACGAGGTTGCCATCATCCCGTCGAAGCGGATGCGGAACAAGATCGCTGGC
TTCGTTACCCACCTAATGAAGCGCATCCAGAGGGGGCCCGTGCGAGGAAT
TTCTCTCAAGCTCCAAGAAGAGGAACGGGAAAGGCGTTTGGACTTCGTTC
CCGAGGTGGGTGCTAACGATTTCCATAGTATGTTAAAAAGGGATACTCGT
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