mRNA_H-elongata_contig7462.15142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7462.15142.1
Unique NamemRNA_H-elongata_contig7462.15142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: D7G6Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y9_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 3.830e-81
Identity = 206/402 (51.24%), Postives = 251/402 (62.44%), Query Frame = 3 
Query:    9 LEAGDDGAFDLGDASPPSPPPDREAPPKAEESTVGPTGIKAMGESQATTVSNDLSSAPGSPQKIAINTEGDQKQVDQDDQAESDGETS-----------EEFQDAREALRLPSEQSRGWGKGYIEAIPEMTNASSETLDSEKPRGENEPQPQPVKPCPAELVMGAGSKKRTSFIAEGLSNVRLPMAYYCRAKTPETFSKEGLERDDSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            LEAG+DG FD+GDASPP  PP R    +  ++    T   A       T  +   S P       ++ +G  + +       S G  +           E+FQDA E     + Q  G G    E         S      +          P      +   G G   R + IA GL+NVRLPM Y  + +  E   ++GL   DS+GE +FHDA D+  G+ KDA KAREMKEAGN HYKNG+++DAVDYYTMAL YCP+ EAH KDRAV+L NRAQ HLRL+E++ VV DCTAALE DPSY+KALLRXXXXXXXXXXXXXXXXXXXXXXXXXX++R AKE+V RLEKL ++K E MKEEAIGKLK+LGN++LGNFGLS DNFKM QDP++GSYSINFER
Sbjct:   11 LEAGEDGTFDVGDASPPPSPPKRVGSARRTQNATATTVSTAPA-----TDGDPCGSPPIKDDWEKVDLDGADEGLPPPAGNASQGREAGAPPSAPEYAQEDFQDAVETQDESATQQAGTGATTTEDGTSCCVDDSPGKACGQAARVESSAAAPPHAVVEQRPPGLGG--RVNVIASGLANVRLPMGYGRQMRQDE---EDGLV--DSDGEEQFHDAQDSGPGVVKDATKAREMKEAGNEHYKNGEFEDAVDYYTMALHYCPEDEAHKKDRAVFLANRAQGHLRLEEYETVVEDCTAALELDPSYVKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXSLRLAKESVPRLEKLHNDKNEKMKEEAIGKLKDLGNALLGNFGLSTDNFKMKQDPNTGSYSINFER 400
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A835YHX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 7.750e-41
Identity = 109/187 (58.29%), Postives = 135/187 (72.19%), Query Frame = 3 
Query:  642 LSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXN------IRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGS-YSINFER 1181
            ++KDA KA+EMKE GN +Y    Y DA D YT+AL +CPD E   +++AVY  NRA  HLRL++F  VV DCT AL   P Y+KALLR XXXXXXXXXXXXXXXXXXXXXX          ++ A  ++ RL+KL  EK E +K+EA+GKLKELGNS+LG+FGLSLDNFK+ QD S G  Y+I+F +
Sbjct:    1 MTKDAAKAKEMKEQGNTYYLAKQYLDAADCYTLALEFCPDDEGERENKAVYFSNRAACHLRLEDFQQVVNDCTEALTIKPKYVKALLRRXXXXXXXXXXXXXXXXXXXXXXAPPEEAPPKVVQKALTDIDRLQKLHEEKMEQLKDEALGKLKELGNSLLGHFGLSLDNFKVNQDASGGGGYNISFNK 187
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A7S2S6C6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.550e-36
Identity = 97/178 (54.49%), Postives = 128/178 (71.91%), Query Frame = 3 
Query:  648 KDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            ++A  A ++KE GN  YK+ +Y +A+D Y+ AL Y P+ + +   RAVYL NRA   L L  ++DV+ DCT ALE+DP Y+KALLR      XXXXXXXXXXXXXXXXXXXX    A +   RL+ +  +K E +K+E +GKLK+LGN+VLG FG+SLDNFK VQDP +GSYSI+F++
Sbjct:   62 RNAETAAKLKEQGNEEYKSKNYLNAIDIYSDALEYVPEEKLYDSARAVYLSNRAACFLALGHYEDVIEDCTDALENDPRYVKALLRRAQAHEXXXXXXXXXXXXXXXXXXXXXXXXAVQEQRRLDAIVKKKHEELKDEMMGKLKDLGNTVLGKFGMSLDNFKTVQDPQTGSYSISFQQ 239
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: G3G6S3_9PHAE (Tetratricopeptide repeat protein 1 (Fragment) n=21 Tax=Fucaceae TaxID=3010 RepID=G3G6S3_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.960e-35
Identity = 76/110 (69.09%), Postives = 81/110 (73.64%), Query Frame = 3 
Query:  813 AHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQ 1142
            AHLRL+EFDDVVVDCTAALE DPSYMKALLR                          N+RSAKEN+ RLEKLQ++KTE MKEEAIGKLKELGNSVLGNFGLSLDNFKMVQ
Sbjct:    1 AHLRLQEFDDVVVDCTAALEVDPSYMKALLRRAQANEQLEKYDLALEDTKTLVEIDPNLRSAKENMARLEKLQADKTEKMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQ 110
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: UPI0019298FD4 (tetratricopeptide repeat protein 1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298FD4)

HSP 1 Score: 140 bits (354), Expect = 4.730e-35
Identity = 80/197 (40.61%), Postives = 114/197 (57.87%), Query Frame = 3 
Query:  591 DSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            DS  E  F DA++    L K  N+  + K  GN  + +  Y+DA+  Y +AL    +G    + R++   NRA   L+L+++DD + +CT ALE +PSY+KALLR                          +   A+  + RLE + +EK E MKEE IGKLKE+GNSVLG FG+S+DNFK V+DP++GSYSI+F+R
Sbjct:   30 DSSDEEPFEDALNEEQLLEKARNQVNDAKIEGNRLFGSDQYEDALSKYELALQLASEGPDSEEIRSMCHANRAICFLKLQKYDDTIKECTKALELNPSYVKALLRRAEAHEKLDHLEEAIADMKKIMELDPSNDQARRTIQRLEPILAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 226
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A024ULW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULW4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.290e-34
Identity = 82/208 (39.42%), Postives = 115/208 (55.29%), Query Frame = 3 
Query:  552 TPETFSKEGLERDDSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINF 1175
            TPE  + E     D+E + E ++ ++  +  +KD  KA E KEAGN  +K G Y DA D YT AL  CP  + ++ ++AVY  NRA   L L   ++ + DCT A+ H P Y+KAL+R                           + SA +   RL  + +E+ E MK E + KLK  GN++LG FGLS DNF+MVQDP++GSY+INF
Sbjct:   14 TPEKTTPERKPTHDNE-DHELNELVEELSVETKDVKKASEAKEAGNELFKAGRYLDAFDLYTKALRLCPSEDEYAYNKAVYFSNRAACLLHLGRPEESIEDCTMAITHSPKYVKALMRRSQAYEKMDKMDEALQDVKTVLEIDPTVPSAIDAEKRLSAVVAERQEKMKAEMLDKLKGFGNTILGKFGLSTDNFQMVQDPATGSYNINF 220
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A0K9NL18_ZOSMR (Tetratricopeptide repeat protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NL18_ZOSMR)

HSP 1 Score: 138 bits (347), Expect = 7.340e-34
Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 3 
Query:  591 DSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            D + E  F DA+D      K  N+A + KE GN  +++G Y DA+  Y +A+   P+G      R+    NRA    +L  F+D + +CT ALE D SY KAL+R XXXXXXXXXXXXXXXXXXXXXXXXX    A + + RLE L   K E MKEE IGKLK++GNS+LG FG+S+DNFK V+DP++GSYS++F+R
Sbjct:   47 DDQEEESFEDALDDEQHKQKALNQANDAKEIGNNLFRSGQYSDALSQYEVAIQTAPEGALSEDLRSKCHNNRATCFAKLGNFNDTIKECTKALELDSSYAKALIRRXXXXXXXXXXXXXXXXXXXXXXXXXXNLQAVKTIRRLEPLAEAKREKMKEEMIGKLKDMGNSILGRFGMSVDNFKTVKDPNTGSYSVSFQR 243
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A196SEH6_BLAHN (Mitochondrial Protein Translocase (MPT) Family n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SEH6_BLAHN)

HSP 1 Score: 135 bits (341), Expect = 1.550e-33
Identity = 73/180 (40.56%), Postives = 102/180 (56.67%), Query Frame = 3 
Query:  642 LSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            + +   KA   KE GN  YK GD++ AV  Y  +LS+CP G+ ++KDRA++  N A A + LK++D  +   T A+E +PSY+KA  R                          +    K+   +L K   E+ E +K E IGKLKE+GN VLG FG+SLDNFKMVQDP++G YSI +E+
Sbjct:   20 IERSIEKAMSFKEEGNNMYKKGDFEAAVVSYKTSLSFCPLGDEYNKDRAIFFCNMAAAQIELKQYDAAIESATHAVEMNPSYIKAYARRASAYLATEKLDECLADYDKILELDADNTQYKQKRKQLAKQIDERNEKLKAEMIGKLKEVGNKVLGKFGMSLDNFKMVQDPATGGYSIKYEK 199
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A6I9SDJ8_ELAGV (tetratricopeptide repeat protein 1 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9SDJ8_ELAGV)

HSP 1 Score: 136 bits (343), Expect = 2.010e-33
Identity = 86/203 (42.36%), Postives = 116/203 (57.14%), Query Frame = 3 
Query:  582 ERDDSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDYYTMAL---SYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER 1181
            E+ DSE E  F DA+       +  N+A + KE GN  +K G Y DA+  Y +AL   S  P  E  S   A    NRA   L+L++F+D + +CT ALE +PSY+KAL+R                          +   A+ N+ RLE + +EK E MKEE IGKLKE+GNS+LG FG+S+DNFK V+DP++GSYSI F+R
Sbjct:   35 EKADSEDET-FEDALTDEQLKERSLNQANDAKEEGNKLFKAGKYGDALLQYELALQIASEVPSSEVCSICHA----NRAVCFLKLEKFNDTIKECTKALELNPSYIKALIRRAEAHEKVEHYEEAVADWKKIVDLDPSNDQARRNIRRLEPIAAEKREKMKEEMIGKLKEMGNSILGRFGMSVDNFKAVKDPNTGSYSIQFQR 232
[Close]
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Match: A0A7S3HEF4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEF4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.240e-33
Identity = 70/175 (40.00%), Postives = 107/175 (61.14%), Query Frame = 3 
Query:  648 KDANKAREMKEAGNGHYKNGDYKDAVDYYTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDPSYMKALLRXXXXXXXXXXXXXXXXXXXXXXXXXXNIRSAKENVTRLEKLQSEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSIN 1172
            K+ +KA E KE GN +++N +Y DA++ Y+ A+++CP+ E + ++ A + GNR+ A+  ++EF+ VV DCTAAL     Y+K + R                          N     + + RL+    +K   MK+EA+GKLKELGNS+LGNFG+SLDNFKM QDP++GS++I+
Sbjct:   73 KNLSKALEAKEEGNNYFRNKEYDDALEAYSKAITFCPEDEENKENLATFYGNRSAAYFAVEEFELVVEDCTAALALKADYVKVIARRMLANEKLEKYEEALTDAKLVQDNDPNYPKIADKIRRLQIAYDDKMTKMKDEALGKLKELGNSILGNFGMSLDNFKMNQDPATGSWNIS 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7462.15142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y9_ECTSI3.830e-8151.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHX5_9STRA7.750e-4158.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S6C6_9STRA3.550e-3654.49Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
G3G6S3_9PHAE2.960e-3569.09Tetratricopeptide repeat protein 1 (Fragment) n=21... [more]
UPI0019298FD44.730e-3540.61tetratricopeptide repeat protein 1 n=1 Tax=Dioscor... [more]
A0A024ULW4_9STRA1.290e-3439.42Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0K9NL18_ZOSMR7.340e-3451.78Tetratricopeptide repeat protein n=1 Tax=Zostera m... [more]
A0A196SEH6_BLAHN1.550e-3340.56Mitochondrial Protein Translocase (MPT) Family n=1... [more]
A0A6I9SDJ8_ELAGV2.010e-3342.36tetratricopeptide repeat protein 1 n=1 Tax=Elaeis ... [more]
A0A7S3HEF4_9STRA3.240e-3340.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7462contigH-elongata_contig7462:2637..6114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.8
Seed ortholog evalue2.9e-68
Seed eggNOG ortholog2880.D7G6Y9
Preferred nameTTC1
KEGG koko:K04136,ko:K07562
KEGG Pathwayko03008,ko03013,ko04020,ko04022,ko04080,ko04261,ko04270,ko04970,map03008,map03013,map04020,map04022,map04080,map04261,map04270,map04970
GOsGO:0000151,GO:0000209,GO:0001664,GO:0001666,GO:0002931,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010604,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016234,GO:0016567,GO:0016740,GO:0017015,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019904,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030162,GO:0030163,GO:0030433,GO:0030512,GO:0030544,GO:0030579,GO:0030674,GO:0030911,GO:0030968,GO:0031072,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031334,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0031647,GO:0031674,GO:0031943,GO:0031974,GO:0031981,GO:0032091,GO:0032268,GO:0032270,GO:0032350,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034450,GO:0034605,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043292,GO:0043393,GO:0043412,GO:0043632,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045184,GO:0045732,GO:0045862,GO:0046332,GO:0046907,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051098,GO:0051100,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051787,GO:0051788,GO:0051865,GO:0051879,GO:0060090,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070534,GO:0070585,GO:0070647,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090034,GO:0090035,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0099080,GO:0099081,GO:0099512,GO:0101031,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903844,GO:1903845,GO:1990234,GO:2000058,GO:2000060
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04030
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011720.1
Exons5
Model size1594
Cds size1053
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.8806546-UTR-H-elongata_contig7462:2636..30461622931149.8806546-UTR-H-elongata_contig7462:2636..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7462 2637..3046 -
1691679718.855418-UTR-H-elongata_contig7462:2636..30461691679718.855418-UTR-H-elongata_contig7462:2636..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7462 2637..3046 -
1622931149.9539266-UTR-H-elongata_contig7462:5983..61141622931149.9539266-UTR-H-elongata_contig7462:5983..6114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7462 5984..6114 -
1691679718.931547-UTR-H-elongata_contig7462:5983..61141691679718.931547-UTR-H-elongata_contig7462:5983..6114Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7462 5984..6114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.8933206-CDS-H-elongata_contig7462:3046..31621622931149.8933206-CDS-H-elongata_contig7462:3046..3162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 3047..3162 -
1691679718.871315-CDS-H-elongata_contig7462:3046..31621691679718.871315-CDS-H-elongata_contig7462:3046..3162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 3047..3162 -
1622931149.9048789-CDS-H-elongata_contig7462:3733..38471622931149.9048789-CDS-H-elongata_contig7462:3733..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 3734..3847 -
1691679718.8808415-CDS-H-elongata_contig7462:3733..38471691679718.8808415-CDS-H-elongata_contig7462:3733..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 3734..3847 -
1622931149.9187117-CDS-H-elongata_contig7462:4515..46361622931149.9187117-CDS-H-elongata_contig7462:4515..4636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 4516..4636 -
1691679718.8957913-CDS-H-elongata_contig7462:4515..46361691679718.8957913-CDS-H-elongata_contig7462:4515..4636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 4516..4636 -
1622931149.93144-CDS-H-elongata_contig7462:5032..51741622931149.93144-CDS-H-elongata_contig7462:5032..5174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 5033..5174 -
1691679718.9096646-CDS-H-elongata_contig7462:5032..51741691679718.9096646-CDS-H-elongata_contig7462:5032..5174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 5033..5174 -
1622931149.9433687-CDS-H-elongata_contig7462:5423..59831622931149.9433687-CDS-H-elongata_contig7462:5423..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 5424..5983 -
1691679718.9219415-CDS-H-elongata_contig7462:5423..59831691679718.9219415-CDS-H-elongata_contig7462:5423..5983Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7462 5424..5983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7462.15142.1prot_H-elongata_contig7462.15142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7462 3047..5983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7462.15142.1

>prot_H-elongata_contig7462.15142.1 ID=prot_H-elongata_contig7462.15142.1|Name=mRNA_H-elongata_contig7462.15142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=351bp
MGESQATTVSNDLSSAPGSPQKIAINTEGDQKQVDQDDQAESDGETSEEF
QDAREALRLPSEQSRGWGKGYIEAIPEMTNASSETLDSEKPRGENEPQPQ
PVKPCPAELVMGAGSKKRTSFIAEGLSNVRLPMAYYCRAKTPETFSKEGL
ERDDSEGEAEFHDAIDTAAGLSKDANKAREMKEAGNGHYKNGDYKDAVDY
YTMALSYCPDGEAHSKDRAVYLGNRAQAHLRLKEFDDVVVDCTAALEHDP
SYMKALLRRAQANEQLEKYDLALEDTKTLVEMDPNIRSAKENVTRLEKLQ
SEKTEHMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQDPSSGSYSINFER
*
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mRNA from alignment at H-elongata_contig7462:2637..6114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7462.15142.1 ID=mRNA_H-elongata_contig7462.15142.1|Name=mRNA_H-elongata_contig7462.15142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3478bp|location=Sequence derived from alignment at H-elongata_contig7462:2637..6114- (Himanthalia elongata Himel1 dioecious)
AGACTGCTTTGGAAGCCGGAGACGACGGAGCCTTTGACCTTGGAGATGCG
TCCCCTCCTAGTCCCCCACCAGATCGAGAGGCACCACCCAAAGCAGAAGA
ATCGACAGTAGGGCCGACAGGGATCAAAGCAATGGGTGAATCACAGGCAA
CAACAGTAAGCAACGACCTCTCCAGCGCGCCCGGCAGCCCGCAAAAAATA
GCTATTAATACAGAGGGCGACCAGAAACAAGTCGATCAAGACGACCAAGC
CGAAAGTGACGGGGAGACGTCAGAGGAGTTCCAAGATGCCCGGGAAGCGT
TAAGATTGCCATCAGAACAGTCTCGAGGCTGGGGTAAGGGATATATTGAA
GCAATCCCCGAGATGACGAACGCCTCGAGTGAAACGCTAGACTCGGAAAA
ACCACGAGGGGAAAACGAGCCCCAGCCCCAGCCCGTAAAGCCATGCCCCG
CGGAACTCGTAATGGGGGCTGGGTCGAAGAAACGAACAAGCTTTATCGCC
GAGGGGCTGTCGAACGTTCGGCTTCCGATGGCATACTATTGCAGAGCAAA
AACTCCGGAGACGTTTTCGAAGGAAGGACTCGAACGCGATGATAGCGAGG
GCGAAGCAGAGTTCCACGACGCAATCGATACCGCTGCGGGGCTATCTAAA
GACGCCAACAAGGCCCGTGAAATGAAGGAAGCTGGAAACGGGTGAGAATA
TATGCTCGATGGATGCTTGAGGAAGTATTCAGCAGATCAGAGTAGCTCGC
CGTAGCGCAGTTTTATGTGTGGCTTCGTTCCCGCTTATGTTAATGCGATA
CCGGATGCTGCTTTAGGCATATGTTATTGGATATATTAATAACGTTAATA
ATGTGAATGTTATTGGATGATGGTGATATTTTGAAGAGATTCCGCCTGAT
AGTATGTCATGCGGTGATGATCCCGACTGCTGTTCTCAAGGCACTACAAA
AACGGAGATTACAAAGACGCGGTAGACTACTACACGATGGCCTTAAGCTA
CTGTCCCGACGGAGAAGCCCACAGCAAGGATAGAGCTGTGTACCTCGGGA
ACCGCGCTCAAGCGCACCTCCGGCTGAAAGAGGTGATCATTATTGCCGTC
ATAGCCGTCATAGTTGATCATGTCGTTATTGTCGACATAGCCGTCATAGG
TGATCATGTCGTTATTGCCGTCATCCAAGTCTAATACTGAAATTGATCGT
TTTAGGGGGACGGTTGCGATGGGGACTGGAAACGTAACGCGTCTCCGCCG
TTCTGTTTTTTATTTTATTTTATTTCGTTTCATTTCACCTAGATGTGTTT
TAAAAATCGAAATCGCCCCTTTGACCCTTTGGCCAATCGAAAGAGAGGGA
TATCGTTAAACCCTGAGAAGTACCTACTAAGGGAATCATTTTTTTGTTTT
TGTCTAACGCTCCTTGCCATACCCCCCCCCCCCTTGTTGGCCGTTCATCT
TAATACTGGACGATACGATCCTCCACAGTTCGATGACGTGGTGGTTGACT
GCACAGCTGCCTTGGAGCACGATCCGTCGTACATGAAGGCACTCTTAAGA
CGTGCGCAAGCGAACGAACAGCTTGAGAAGTACGACCTCGCCTTGGAAGG
TGAGCATTAAATTTTCCTCTTGACCGCCCAAAGGTTGCCGAAGCCAGGCA
CGGGAGGGCTTGCATAATCGAGTGAGCAGTGCACATTGCAGCGTTCCTGT
ACTATCATACCATGTAGATATTCAATGTCAATATCAATGTCGTGCACTAC
TTGATGATCTATAAACATTACACTAGAGTACATTAGAAGAGTGTATCAAG
TATATTAATGGCGACGGAGCAACTGCCAATCGAAGGAGGCTACGGGCGTC
TATAAATCATCGCTTTCTTTCTAACATGGTTGCCATATAGAAGCCCTCGA
TATTGGTATATTGGTCGAGTGTACCATAATACTATTAATGATACTGCCGA
TGCAAGATCTAACCCTAACCCTAACCCTAACCCAAGATCTAAGCTACTAA
TAATATGGTTTGTTGTCTGCTCGGAAGAAAATCTACTAGGGTTGTCTCTT
TCTATGATCGTGCTGTTTTAATTTTCAATGATGCATTCTTGTACAGTAAC
ATGTTGGGTCCTTGTTATTATGACTCCCTGTCCTTGTTATTATGGGGTCC
TTGTTATTTTGGTTCCCCTGTTATGGTGACTCCGGGGTTGAAGCCTAGAG
CGCTGGCGGCTGAACAGCACTGAAGAGCTAGCCATCCATCATTCCCCGCT
GTTTTCCTGTTTTCCAGACACCAAAACATTAGTGGAGATGGACCCGAATA
TCCGGTCTGCGAAGGAGAATGTCACTCGATTGGAGAAGCTTCAGTCGGAG
AAAACGGAACATATGAAGGAGGAGGCGATCGGTGAGCTCTTGCCGGCCGA
CGTCGCAGTTGGTTTTGTGATGTTCTGCTTTGTTTTGTTTTGTTTCGTTA
TGCAATTTGTTTGTTTGTCCTTGGGCCTCAATGATACGGCGGTATCGGAT
TGCGGTGTTTACGGAAGTCGTTTATGGGAGTCCTTCCCATACTCGTGTGC
TGATAACGACTGTCGTTTAGTGCCAAGTGCTCCGCCCCCAGCGGGACGCT
TCAAAAACCGCTTCAAGTACCACTTCTGTGAGTAAGAAACTGCACGTTTG
AAAGTTGACCCATGATTGATACAGCTATATTATAAGTAATCCTTAAACAG
AAAAGAAGTGGTCATGGTCCATCTTTGTGTCAGCGCGTTATTTAGTGTTG
CTCTACTGCAACACGTGTACGACCTACTCATCGTCAAGCCGCAGCGGAGT
ATTCAAGTGGTTGGCGGTGTTCCCAGGAAGAATCGAATCGCCTGTCAAGT
TATGAACTCGTGGTGGTGCTTTTTTAGTTGATTGACCCGTGTCAACCACG
GCTATGCTATGCTGTGCTGTGCTGTGCCGTGCGTTTTTATATCGAACGGC
AGGAAAGCTGAAGGAACTAGGAAACTCTGTGCTTGGAAACTTTGGGCTGA
GCTTAGATAATTTCAAGATGGTCCAAGACCCGAGTTCTGGCTCGTATAGC
ATTAATTTTGAGAGATGACTGACCAGCGATGCCGAGCGCTACAGTTTTTT
CTCGTGAAGTGTTACTTCGAATGTTTGAATTTTGCTTCCTTCACATACGA
ATTTGTGAACGATCGAGGTTTGCCATCGACTACGACTACCAACTATTATT
ATTATTTTGAAGTTATATATTATTTTGAAGTTATTTTTATTTTGTCCCTA
CTCGCTGCTACAGATACGATATTTAATACTCTAATACTCTCAAGTCAATC
TTTTGTTAGACCAATTTTGCACCGCGATCCTTGTTTTCCCTCGCTGCATC
CTGTGCGTGATGCTGATGGCTGGTATACTGATGATCGAAAAAGCGTGATC
ATTTTCACATGAATGTCGAGAACGGCGGAAGATGTGGACTGTTTTTCGAT
GATTGATGATCAAGTGAGTTGTTTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig7462:2637..6114-

>mRNA_H-elongata_contig7462.15142.1 ID=mRNA_H-elongata_contig7462.15142.1|Name=mRNA_H-elongata_contig7462.15142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2106bp|location=Sequence derived from alignment at H-elongata_contig7462:2637..6114- (Himanthalia elongata Himel1 dioecious)
ATGGGTGAATCACAGGCAACAACAGTAAGCAACGACCTCTCCAGCGCGCC
CGGCAGCCCGCAAAAAATAGCTATTAATACAGAGGGCGACCAGAAACAAG
TCGATCAAGACGACCAAGCCGAAAGTGACGGGGAGACGTCAGAGGAGTTC
CAAGATGCCCGGGAAGCGTTAAGATTGCCATCAGAACAGTCTCGAGGCTG
GGGTAAGGGATATATTGAAGCAATCCCCGAGATGACGAACGCCTCGAGTG
AAACGCTAGACTCGGAAAAACCACGAGGGGAAAACGAGCCCCAGCCCCAG
CCCGTAAAGCCATGCCCCGCGGAACTCGTAATGGGGGCTGGGTCGAAGAA
ACGAACAAGCTTTATCGCCGAGGGGCTGTCGAACGTTCGGCTTCCGATGG
CATACTATTGCAGAGCAAAAACTCCGGAGACGTTTTCGAAGGAAGGACTC
GAACGCGATGATAGCGAGGGCGAAGCAGAGTTCCACGACGCAATCGATAC
CGCTGCGGGGCTATCTAAAGACGCCAACAAGGCCCGTGAAATGAAGGAAG
CTGGAAACGGATGGGTGAATCACAGGCAACAACAGTAAGCAACGACCTCT
CCAGCGCGCCCGGCAGCCCGCAAAAAATAGCTATTAATACAGAGGGCGAC
CAGAAACAAGTCGATCAAGACGACCAAGCCGAAAGTGACGGGGAGACGTC
AGAGGAGTTCCAAGATGCCCGGGAAGCGTTAAGATTGCCATCAGAACAGT
CTCGAGGCTGGGGTAAGGGATATATTGAAGCAATCCCCGAGATGACGAAC
GCCTCGAGTGAAACGCTAGACTCGGAAAAACCACGAGGGGAAAACGAGCC
CCAGCCCCAGCCCGTAAAGCCATGCCCCGCGGAACTCGTAATGGGGGCTG
GGTCGAAGAAACGAACAAGCTTTATCGCCGAGGGGCTGTCGAACGTTCGG
CTTCCGATGGCATACTATTGCAGAGCAAAAACTCCGGAGACGTTTTCGAA
GGAAGGACTCGAACGCGATGATAGCGAGGGCGAAGCAGAGTTCCACGACG
CAATCGATACCGCTGCGGGGCTATCTAAAGACGCCAACAAGGCCCGTGAA
ATGAAGGAAGCTGGAAACGGGCACTACAAAAACGGAGATTACAAAGACGC
GGTAGACTACTACACGATGGCCTTAAGCTACTGTCCCGACGGAGAAGCCC
ACAGCAAGGATAGAGCTGTGTACCTCGGGAACCGCGCTCAAGCGCACCTC
CGGCTGAAAGAGGCACTACAAAAACGGAGATTACAAAGACGCGGTAGACT
ACTACACGATGGCCTTAAGCTACTGTCCCGACGGAGAAGCCCACAGCAAG
GATAGAGCTGTGTACCTCGGGAACCGCGCTCAAGCGCACCTCCGGCTGAA
AGAGTTCGATGACGTGGTGGTTGACTGCACAGCTGCCTTGGAGCACGATC
CGTCGTACATGAAGGCACTCTTAAGACGTGCGCAAGCGAACGAACAGCTT
GAGAAGTACGACCTCGCCTTGGAAGTTCGATGACGTGGTGGTTGACTGCA
CAGCTGCCTTGGAGCACGATCCGTCGTACATGAAGGCACTCTTAAGACGT
GCGCAAGCGAACGAACAGCTTGAGAAGTACGACCTCGCCTTGGAAGACAC
CAAAACATTAGTGGAGATGGACCCGAATATCCGGTCTGCGAAGGAGAATG
TCACTCGATTGGAGAAGCTTCAGTCGGAGAAAACGGAACATATGAAGGAG
GAGGCGATCGACACCAAAACATTAGTGGAGATGGACCCGAATATCCGGTC
TGCGAAGGAGAATGTCACTCGATTGGAGAAGCTTCAGTCGGAGAAAACGG
AACATATGAAGGAGGAGGCGATCGGAAAGCTGAAGGAACTAGGAAACTCT
GTGCTTGGAAACTTTGGGCTGAGCTTAGATAATTTCAAGATGGTCCAAGA
CCCGAGTTCTGGCTCGTATAGCATTAATTTTGAGAGATGAGAAAGCTGAA
GGAACTAGGAAACTCTGTGCTTGGAAACTTTGGGCTGAGCTTAGATAATT
TCAAGATGGTCCAAGACCCGAGTTCTGGCTCGTATAGCATTAATTTTGAG
AGATGA
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