mRNA_H-elongata_contig74602.15140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74602.15140.1
Unique NamemRNA_H-elongata_contig74602.15140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74602.15140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74602contigH-elongata_contig74602:2440..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.7018065-CDS-H-elongata_contig74602:2439..27841622931149.7018065-CDS-H-elongata_contig74602:2439..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74602 2440..2784 +
1691679718.7900667-CDS-H-elongata_contig74602:2439..27841691679718.7900667-CDS-H-elongata_contig74602:2439..2784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74602 2440..2784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.762194-UTR-H-elongata_contig74602:2784..27951622931149.762194-UTR-H-elongata_contig74602:2784..2795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74602 2785..2795 +
1691679718.8013124-UTR-H-elongata_contig74602:2784..27951691679718.8013124-UTR-H-elongata_contig74602:2784..2795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74602 2785..2795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74602.15140.1prot_H-elongata_contig74602.15140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74602 2440..2784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74602.15140.1

>prot_H-elongata_contig74602.15140.1 ID=prot_H-elongata_contig74602.15140.1|Name=mRNA_H-elongata_contig74602.15140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MHQPNGSLHKNLTLCPCLLRPPPAVLSPTNPRKHDHGFPKIHQPNGSLRK
NLTLCPLFASPATPPTTVLSVPLSFTSSRSLDHRSFQNAPTKRPRCLWLS
WVKTRVFHQHSARA*
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mRNA from alignment at H-elongata_contig74602:2440..2795+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74602.15140.1 ID=mRNA_H-elongata_contig74602.15140.1|Name=mRNA_H-elongata_contig74602.15140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=356bp|location=Sequence derived from alignment at H-elongata_contig74602:2440..2795+ (Himanthalia elongata Himel1 dioecious)
ATGCACCAACCAAACGGCTCGTTGCACAAGAACTTGACCTTGTGCCCTTG
CCTTCTCCGCCCCCCCCCCGCCGTTCTTTCCCCTACAAACCCGAGGAAAC
ACGATCATGGGTTCCCGAAAATACATCAGCCAAACGGCTCGTTGCGCAAG
AACTTGACCTTGTGCCCTTTATTTGCCTCCCCCGCAACCCCCCCCACCAC
AGTTCTTTCCGTCCCCCTTTCGTTTACAAGCTCGAGGAGCCTCGATCATC
GTTCATTCCAAAATGCACCAACCAAGCGGCCTAGGTGTTTGTGGCTCTCT
TGGGTCAAAACCCGTGTTTTTCACCAACATTCCGCACGCGCGTAGAGACT
ACTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig74602:2440..2795+

>mRNA_H-elongata_contig74602.15140.1 ID=mRNA_H-elongata_contig74602.15140.1|Name=mRNA_H-elongata_contig74602.15140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig74602:2440..2795+ (Himanthalia elongata Himel1 dioecious)
ATGCACCAACCAAACGGCTCGTTGCACAAGAACTTGACCTTGTGCCCTTG
CCTTCTCCGCCCCCCCCCCGCCGTTCTTTCCCCTACAAACCCGAGGAAAC
ACGATCATGGGTTCCCGAAAATACATCAGCCAAACGGCTCGTTGCGCAAG
AACTTGACCTTGTGCCCTTTATTTGCCTCCCCCGCAACCCCCCCCACCAC
AGTTCTTTCCGTCCCCCTTTCGTTTACAAGCTCGAGGAGCCTCGATCATC
GTTCATTCCAAAATGCACCAACCAAGCGGCCTAGGTGTTTGTGGCTCTCT
TGGGTCAAAACCCGTGTTTTTCACCAACATTCCGCACGCGCGTAGATGCA
CCAACCAAACGGCTCGTTGCACAAGAACTTGACCTTGTGCCCTTGCCTTC
TCCGCCCCCCCCCCGCCGTTCTTTCCCCTACAAACCCGAGGAAACACGAT
CATGGGTTCCCGAAAATACATCAGCCAAACGGCTCGTTGCGCAAGAACTT
GACCTTGTGCCCTTTATTTGCCTCCCCCGCAACCCCCCCCACCACAGTTC
TTTCCGTCCCCCTTTCGTTTACAAGCTCGAGGAGCCTCGATCATCGTTCA
TTCCAAAATGCACCAACCAAGCGGCCTAGGTGTTTGTGGCTCTCTTGGGT
CAAAACCCGTGTTTTTCACCAACATTCCGCACGCGCGTAG
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