mRNA_H-elongata_contig7452.15135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7452.15135.1
Unique NamemRNA_H-elongata_contig7452.15135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A6H5JEP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEP8_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 8.060e-164
Identity = 274/414 (66.18%), Postives = 324/414 (78.26%), Query Frame = 2 
Query:  746 KGFGTPVPP-PKPVQKGIGSNKGPKXXXXXXXXXXXXXXXXXXXXXQPVGGMDALAPGIPVTGTTDHQKVITEADFSSPEPVTATLTATAGS------KAAGEE--EEMSPVEMLKYLRDNNLSIDLETMNPVELPKTLAAKLEAMFPFPKANVKERYCLGPTPKPSEFVNAMLPLLPEDEPWNGKKIRPLPDLKEFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEEIALQDIFRSLPSPTDGLDEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQV 1960
            KGFG P  P P+PVQKG+  NKGP          XX    XXXXX     G DALA G+PV G TDHQK    A+ +      A + A  G+      +AAG+   +  S  +ML+YLRDNNL+IDLETMNPVE+PK   AK+EA FPFP ANV  +Y LG  PKPS+F  A++ LLPEDEPWNG KIRPLP+LK+FL+ANR HGG RGM VI+++M+KAM EGDLDRAK LKGAAIC+TKAE+++TGPFRQAVMFAENR+APCMGSTVCEEYAG D A+AAATWVVLKACVAEWELRLRE R EEI L DIFR++P+PT GLDE+R A+ITGSVQAMG +F NN+KLM+ +PA +RFM+GALG+NTTT+VRRFAL++FCPKEG+APEDLRLRV SL+ GL+QLPSKSYHQLQV
Sbjct:  204 KGFGAPAAPQPRPVQKGL--NKGPVPMKAQQGGGXXQTKAXXXXXPPKQTGFDALATGVPVGGQTDHQK----ANANRRGVFGAGIGARHGASQQGRGQAAGQRRGDVASRCDMLQYLRDNNLTIDLETMNPVEIPKETDAKMEAFFPFPPANVVAKYSLGAQPKPSQFAAAVIALLPEDEPWNGAKIRPLPELKDFLLANRRHGGKRGMNVISAMMLKAMSEGDLDRAKYLKGAAICMTKAEDTITGPFRQAVMFAENRLAPCMGSTVCEEYAGEDAADAAATWVVLKACVAEWELRLREMRGEEIGLHDIFRTIPNPTMGLDEERTAAITGSVQAMGLAFSNNEKLMKGLPAVLRFMDGALGLNTTTDVRRFALKEFCPKEGMAPEDLRLRVRSLMTGLDQLPSKSYHQLQV 611
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A836CQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQX4_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.750e-65
Identity = 132/301 (43.85%), Postives = 180/301 (59.80%), Query Frame = 2 
Query: 1058 MLKYLRDNNLSIDLETMNPVELPKTLAAKLEAMFPFPKANVKERYCLGPTPKPSEFVNAMLPLLPEDEPWNGKKIRPLPDLKEFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEEIALQDIFRSLPSPTDGLDEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQV 1960
            +++Y R NNL++DLETM  V LPK    KL A+FP     ++ +Y LGP P   EFV A+  L+P D          +  LKEFLVANR  GG+RG   +T LM++A    D  RA  ++   +   KAE++VTGPFRQA+  AE R+AP MGS     Y G D A+A AT++ LKA VAEWE R RE   +E+++ D+ R+     + LD +R   I G+VQ M  +F  +++L   +  E  F+E  L V TT+EVRR ALQ+ CP+ G+ PE+ R R+  L   LE LP  SY QLQ+
Sbjct:  100 LIQYARQNNLAVDLETMGVVNLPKGGEQKLAALFPQSTPELRAKYPLGPQPTVEEFVAALEALVPGDS-------TDVTALKEFLVANRHVGGNRGEAALTQLMLQAQSRRDRARALRMRHLLLAFMKAESAVTGPFRQAIKNAEARLAPNMGSQEVARYGGADAADAVATFLCLKALVAEWEKRYRELTGQEMSVTDVLRAEGLSENKLDAERTGRICGAVQGMSAAFAASERLFSRLTPEALFLERTLTVGTTSEVRRIALQEICPQAGLTPEEFRRRMRGLCAQLESLPRNSYAQLQL 393
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S4D4Y1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Y1_HETAK)

HSP 1 Score: 119 bits (299), Expect = 1.550e-24
Identity = 81/226 (35.84%), Postives = 125/226 (55.31%), Query Frame = 2 
Query: 1298 LKEFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEEIALQDIFRSLPSPTDGLDEDRIAS---ITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGI--APEDLRLRVSSLICGLEQLPSKSYHQLQV 1960
            L  F+V N+   G +   V+TSL ++A  + D ++A+        +   EN++  PFR  +M  E R+AP MG+   E++AG D A+  ATW++LKA VAEWE R R   K +I   +        T+G ++ ++ S   +   VQ M        +L + +P E RF+E AL +NT TEVR++ALQ+F P+EG+   PE L  RV +L    E L +K++  + V
Sbjct:  273 LSAFVVDNKDLLGVKARKVLTSLKLRAQQQFDKNKARYYDDMRRALILKENTLMAPFRLLMMRTEERLAPMMGNMEPEKWAGQDRADYLATWLLLKAAVAEWEKR-RAQLKSDIEFMETVLKNVWLTEGREQRQLESAEYMCALVQGMSLKLAERPELFDQLPPEARFLEQALRMNTGTEVRQYALQEFLPREGLDGVPE-LVARVRALGVATEFLSAKTFTSINV 496
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7R9VTW6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTW6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.500e-18
Identity = 67/230 (29.13%), Postives = 110/230 (47.83%), Query Frame = 2 
Query: 1304 EFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEE------------IALQDIFRSLPSPTDGLDEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQ 1957
            EF++ANR + G +   ++  L ++A  + D D A   +         E  ++ PFRQ ++ AE  + P  G+   + Y G D  E   +++VLK+ VA W+ ++ ++   E            + + D  R LP P      D    I  +   M   F    +L + +P E+RF+E AL + T TE+R+F + DFCP+EG+ P  LR  V  L   L+ +    Y  L+
Sbjct:  127 EFVLANRDYLGFKMNKLLGRLKLRAQSQFDKDAALAYRKLWKNYLTVERHLSAPFRQIMLDAEKNVGPNFGNMDVKSYCGGDLYERTGSYLVLKSMVAHWQQKVMDAEYVESTPETSDNTLEVLMVGDPKRYLPDPPIIFRLDECQRIAQAAANMTAVFVLTPELYDDLPVEVRFVEEALRIQTGTEMRKFVVDDFCPREGVEPASLREGVRRLAIQLDSMQIDPYGDLR 356
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A6U3S327_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S327_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.480e-17
Identity = 83/312 (26.60%), Postives = 148/312 (47.44%), Query Frame = 2 
Query: 1061 LKYLRDNNLSIDLETMNPVELPKTLA-AKLEAMFPFPKANVKERYCLGPTPKPSEFVNAMLPLLPEDEPWNGKKIRPLPDLK----EFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEE------------IALQDIFRSLPSPTDGLDEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSY 1945
            ++ ++     +D+ T   V+L  + A A+L  MFP    +V+  + L  T   +  +  ++  L E    +G  + P P +     +F++ANR   GS+    +  L +KA    +++ A+E++         E+ ++ PFRQ ++ AE ++ P  G+   + Y   D  + A  ++VLK  VA WE ++R++   E            +A  D  R LP P      +    I    Q M  +  N+ +L + +P EIRF+E AL +   T +R++A+++FCP EGI    LR  +  L   +E +    Y
Sbjct:  153 IERIQQGKAVMDVVTRKAVKLSDSGADARLAQMFPGVPDDVRATHRLDWT---TVEIPEVVQKLKEACLVDGA-LPPHPSVSNKGIDFVLANRDKLGSKMKKTLGRLKLKAQSNTEVEEAREMRKLWKHYMTLEDHISAPFRQILLDAEGKVGPNFGNLDLKSYCAGDAYQRAGAYLVLKGMVAHWEKKVRDAEFVENTPSNKNNFLQILATGDPKRYLPDPPIIFRLNECTRICLMAQKMTATLVNDPELFDDLPTEIRFVEKALSIKGGTALRQYAIEEFCPAEGITFTALREGMRRLSAQMECMQLDPY 460
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S2SUL0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUL0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.130e-15
Identity = 65/228 (28.51%), Postives = 121/228 (53.07%), Query Frame = 2 
Query: 1298 LKEFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVC--EEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEEIALQD--IFRSLPSPTD--GLDEDRIASITGSV---QAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQL 1954
            L EF++AN    G+R  + +++  + A    D + A  L+        AE  V   ++Q V+ AE R++  +G+     +E A +  ++ A TWV+LKA V  WE +     +   ALQ+  + RS PS     G  E ++A+   ++   Q M +++   +  M+ +  E++F++ A  + ++TEVRR+A  +FCP+ G+   +LR R+  ++C +++L   +Y  L
Sbjct:  196 LFEFVLANHDMLGTRAAMFLSAAKLSAQFRKDAEEALRLRELLKAFIFAELRVNVGWKQVVLDAEVRVSKIVGNLAALQKEAAKLGASDVAGTWVLLKAAVCTWEDKYVAEEEAIAALQEKQMGRSDPSMRFDVGKKEKQLANTRNNMALWQQMAKTYGEVEPAMDKLLPELKFLDRAFYLPSSTEVRRYAATEFCPEHGMTEAELRRRLRHVLCAIQRLTPTNYLSL 423
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BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S1Y980_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y980_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.720e-14
Identity = 74/302 (24.50%), Postives = 129/302 (42.72%), Query Frame = 2 
Query: 1043 MSPVEMLKYLRDNNLSIDLETMNPVELPKTLAAKLEAMFPFPKANVKERYCLGPTPK--PSEFVNAMLPLLPEDEPWNGKKIRP-LPDLK----EFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAKELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAEAAATWVVLKACVAEWELRLRESRKEEIALQDIF------------RSLPSPTDGL-DEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDL 1888
            + P   +  +R     +D+ T   V+L      +L  MFP      +++Y +    K  P + +NA        E  + +   P  P +     +++++N    G      +   MM    + D +R    +         EN ++GPF+Q    AE R+ P  G    + Y   +  E  A ++VLK+    WE ++R++ +     +D++            R     +D + D    A+I    Q M Q F    +L + +P E+RF+E AL +   T +R+F ++DFCPKE I P  L
Sbjct:  127 LDPSTQMAMIRAGRNVLDVVTRKAVKLYDDPRLRLAQMFPGVPPQTRKKYRMTDLAKMGPQDVINAFAIAASIKETEDDELTLPTFPSIASKALDWVISNWDLLGIDFTAALGRCMMNGAYKKDAERMHAYRDLTRHHMLIENYISGPFKQFCNMAEERIGPNFGDLDMKAYCSGELYERCANYIVLKSMQCVWETKVRDAERLNQMDEDMYTERLIRAATGDPRRFRQNSDIITDLGDCATICARAQQMVQEFVKTPELFDDLPVELRFLEAALKIQGGTALRKFMIEDFCPKEQITPSAL 428
[Close]
BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S2V725_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V725_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.650e-8
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 2 
Query: 1709 ITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYH 1948
            +  +VQ M       +K  + +P  ++F+E AL ++T+TEVRR A+++FCPK GI+PE LR RV  L+  ++ L   +Y 
Sbjct:    1 VVDAVQQMSLRLSIEEKYFKTLPVAMQFLEEALILSTSTEVRRVAIKEFCPKMGISPEFLRERVRDLLASMQFLDCNTYR 80
[Close]
BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S1ZGE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZGE8_TRICV)

HSP 1 Score: 61.6 bits (148), Expect = 6.490e-7
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 2 
Query: 1757 KLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQVIPMMLT 1978
            +L + +P E+RF+E AL + T TE+RRFA++ FCP+EG+ PE LR  V  L   L+ +    Y  L+   + LT
Sbjct:    7 ELYDDLPPEVRFVEEALRIQTGTEMRRFAVEVFCPREGVTPEGLREGVRRLAIQLDSMQIDPYGDLRNAVVRLT 80
[Close]
BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Match: A0A7S0FJF6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJF6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.130e-6
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 2 
Query: 1631 EEIALQDIFRSLPSPTDGLDEDRIASITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFCPKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQVIP 1966
            E + + D  R LP P      +   S+    + M Q+F +++ L + +P E+RF++ AL + + TE+RRF +++FCP+E + PE LR  V  L         +  H LQV P
Sbjct:   22 EILMVGDPRRYLPDPPIIYRLNECLSVCLMARNMTQAFVSDEDLYDDLPCEVRFVDEALKIKSGTELRRFVVEEFCPREQVTPERLREGVRRLF--------QQMHNLQVDP 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7452.15135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JEP8_9PHAE8.060e-16466.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CQX4_9STRA1.750e-6543.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D4Y1_HETAK1.550e-2435.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VTW6_9STRA4.500e-1829.13Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3S327_9STRA1.480e-1726.60Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SUL0_9STRA2.130e-1528.51Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1Y980_9STRA5.720e-1424.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2V725_9STRA3.650e-838.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZGE8_TRICV6.490e-741.89Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0FJF6_9STRA2.130e-633.04Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7452contigH-elongata_contig7452:4420..9901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score534.6
Seed ortholog evalue5.7e-149
Seed eggNOG ortholog2880.D7G7G1
EggNOG OGs2E30C@1,2SA5W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000130.1
Exons8
Model size1981
Cds size1773
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.2866857-UTR-H-elongata_contig7452:4419..46271622931149.2866857-UTR-H-elongata_contig7452:4419..4627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7452 4420..4627 +
1691679718.639932-UTR-H-elongata_contig7452:4419..46271691679718.639932-UTR-H-elongata_contig7452:4419..4627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7452 4420..4627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.3078048-CDS-H-elongata_contig7452:4627..53681622931149.3078048-CDS-H-elongata_contig7452:4627..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 4628..5368 +
1691679718.6491005-CDS-H-elongata_contig7452:4627..53681691679718.6491005-CDS-H-elongata_contig7452:4627..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 4628..5368 +
1622931149.3259375-CDS-H-elongata_contig7452:6141..62471622931149.3259375-CDS-H-elongata_contig7452:6141..6247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 6142..6247 +
1691679718.6567116-CDS-H-elongata_contig7452:6141..62471691679718.6567116-CDS-H-elongata_contig7452:6141..6247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 6142..6247 +
1622931149.346347-CDS-H-elongata_contig7452:6856..70411622931149.346347-CDS-H-elongata_contig7452:6856..7041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 6857..7041 +
1691679718.6643836-CDS-H-elongata_contig7452:6856..70411691679718.6643836-CDS-H-elongata_contig7452:6856..7041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 6857..7041 +
1622931149.3621697-CDS-H-elongata_contig7452:7555..77101622931149.3621697-CDS-H-elongata_contig7452:7555..7710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 7556..7710 +
1691679718.6718907-CDS-H-elongata_contig7452:7555..77101691679718.6718907-CDS-H-elongata_contig7452:7555..7710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 7556..7710 +
1622931149.3791018-CDS-H-elongata_contig7452:7987..80661622931149.3791018-CDS-H-elongata_contig7452:7987..8066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 7988..8066 +
1691679718.681525-CDS-H-elongata_contig7452:7987..80661691679718.681525-CDS-H-elongata_contig7452:7987..8066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 7988..8066 +
1622931149.3955834-CDS-H-elongata_contig7452:8436..85791622931149.3955834-CDS-H-elongata_contig7452:8436..8579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 8437..8579 +
1691679718.6913009-CDS-H-elongata_contig7452:8436..85791691679718.6913009-CDS-H-elongata_contig7452:8436..8579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 8437..8579 +
1622931149.410971-CDS-H-elongata_contig7452:9074..92251622931149.410971-CDS-H-elongata_contig7452:9074..9225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 9075..9225 +
1691679718.7049081-CDS-H-elongata_contig7452:9074..92251691679718.7049081-CDS-H-elongata_contig7452:9074..9225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 9075..9225 +
1622931149.4241734-CDS-H-elongata_contig7452:9688..99011622931149.4241734-CDS-H-elongata_contig7452:9688..9901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 9689..9901 +
1691679718.7167056-CDS-H-elongata_contig7452:9688..99011691679718.7167056-CDS-H-elongata_contig7452:9688..9901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7452 9689..9901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7452.15135.1prot_H-elongata_contig7452.15135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7452 4628..9901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7452.15135.1

>prot_H-elongata_contig7452.15135.1 ID=prot_H-elongata_contig7452.15135.1|Name=mRNA_H-elongata_contig7452.15135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=591bp
MTLPIRLMSALAMAAFTPRSTRSFLAPISSPPINRQGFHAVPARSPTPGV
FRCRAPPQHQPPSSDGPARLGRGSAGGGPMMAKKKNRSKDTKKNNVAAAV
SPTATATAVGTSKEGTASGGSIPVVGSGKGVGGGTTVAEVPLPLTAAATE
AETGEEASTAGAGAGAANSDVKGLTAPKAKGFGTPVPPPKPVQKGIGSNK
GPKPPPTMPIAAQGQGESALPPPRQPVGGMDALAPGIPVTGTTDHQKVIT
EADFSSPEPVTATLTATAGSKAAGEEEEMSPVEMLKYLRDNNLSIDLETM
NPVELPKTLAAKLEAMFPFPKANVKERYCLGPTPKPSEFVNAMLPLLPED
EPWNGKKIRPLPDLKEFLVANRLHGGSRGMIVITSLMMKAMGEGDLDRAK
ELKGAAICVTKAENSVTGPFRQAVMFAENRMAPCMGSTVCEEYAGVDGAE
AAATWVVLKACVAEWELRLRESRKEEIALQDIFRSLPSPTDGLDEDRIAS
ITGSVQAMGQSFRNNQKLMEIVPAEIRFMEGALGVNTTTEVRRFALQDFC
PKEGIAPEDLRLRVSSLICGLEQLPSKSYHQLQVIPMMLT*
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mRNA from alignment at H-elongata_contig7452:4420..9901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7452.15135.1 ID=mRNA_H-elongata_contig7452.15135.1|Name=mRNA_H-elongata_contig7452.15135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5482bp|location=Sequence derived from alignment at H-elongata_contig7452:4420..9901+ (Himanthalia elongata Himel1 dioecious)
ATATGAGACGTGGGACGACAGCAAGCTCGTGAGGACCGTGTCTCTTTATG
TAATCCAGTGTATTTTTTGAATGAGACGGGCCCAGAGAGCCAAACCTAGT
CAAGTGACCACTTTCAGATTTTTCCGTGACACATTGGGGTTGCGAGTGCG
CGTCTCTTTTCTTGATTGAAACATCGGCTCTGGGCAGCGCGCAGCGATTC
CCTTCAACATGACGTTGCCCATCAGGCTCATGAGTGCATTGGCCATGGCA
GCGTTTACTCCCAGGTCTACTCGTTCATTCCTAGCTCCGATAAGTTCCCC
TCCGATTAACCGACAAGGCTTCCATGCCGTGCCAGCTCGTTCCCCCACAC
CGGGTGTTTTTCGCTGTCGAGCGCCGCCTCAGCATCAGCCTCCCTCTTCT
GATGGCCCCGCGAGGTTGGGCCGCGGTAGTGCTGGCGGTGGTCCTATGAT
GGCGAAGAAAAAGAATCGCAGCAAGGATACTAAAAAAAACAACGTCGCAG
CAGCAGTATCACCAACAGCGACAGCGACAGCGGTGGGGACATCGAAGGAG
GGTACCGCAAGTGGCGGCAGCATCCCCGTCGTGGGAAGCGGAAAAGGCGT
CGGAGGTGGCACAACGGTGGCGGAAGTACCGTTACCATTAACTGCGGCGG
CAACGGAAGCGGAAACGGGGGAGGAAGCCTCTACAGCAGGAGCAGGAGCA
GGAGCAGCTAATTCTGACGTGAAGGGATTAACAGCGCCCAAGGCAAAAGG
ATTTGGCACTCCTGTGCCACCGCCCAAGCCCGTACAGAAGGGTATAGGGT
CCAACAAGGGTCCCAAGCCGCCGCCGACCATGCCCATCGCGGCCCAGGGC
CAGGGCGAGTCAGCGCTCCCTCCGCCGCGGCAGCCAGTAGGGGGAATGGA
CGCACTGGCTCCCGGGATTCCTGTGACTGGCACAACGGATCATCAGAAGG
TTGGATTTTACTGCTGTACTTCATTTGACTACGTTTTGCCCTTCTGGAAG
ACATGTTCAGGTTCGAGCGCTCTGGTCGAAGAAACTCGTAGCTTGCCGCT
TGCTCTCTTATTTTTTACTAAACGCGTAGAATATACCAGTACCTAAGAGT
TAATTGCAGCACTTGTGCAGGATAATATTTGTAGGATAATCTAGCCCACT
TACTGTGCTCGAACGAATGTCTGAAGCAGACGGTCTTCAGAGAGAGGACT
CCGCTTTCGAAGAGACGGCAATGGTGCGATTATAGTACCACCAATGTGCT
TTTCGTTAGAGGGGGGTATCGCCGATGCATCACGACTATAAAATAATGCA
TCTGGAGCTAGCTGGCGTCAACGATGTTCAGCCTTCACCCGTGTTCAAAC
CCTAACCGCGTAAATGGCAGTCGCCCTTGGCGGGGCAACGACTTGCTCAC
GCATCTTAAGCTTGTCTGGCCTACTAATACTGTAGGGTGTTAATATTTTT
CGTTCCTTTTCCTTTCGGCCACCGAAATTTTAAATTATCAAATTATCAAA
TTACAAATTTTCCAAGGACAGTACAATCTTGTCGAACCGCGGGAGACATT
TTCTATCATATATTTATTGCAAGCTCCGAGTGCTTTACTTGCCGATCACG
GCTGTCGAGGATTATTCATCAAACATGACACTGATAACTGATCAAAGTAG
TTTTAACCCCCATTAGCTCTAATTTATCAAAGCGAATTAGGCTGTGCTCT
GCTTTGCTCCGCTACGCTCCAGGTGATTACCGAGGCGGATTTTTCGTCGC
CAGAGCCGGTAACGGCAACCCTGACAGCTACTGCAGGCTCCAAGGCCGCC
GGGGAGGAAGAGGAGATGTCTCCCGTAGGTGAGCATTAATTTCCTTTTTT
CCCCTCCTTACAGCATAATACTGTATAACATTCTATTATAGCATAACGCA
CCGGACGTTGTGGAGATAATCTTTAATTTGATACGGAGGCGTATTTGCGC
GTTCTTGAGCCCAGAGAGGGCATGAAGCGGCTCTCGATCACGCATCGTAC
GCGTAACAGTAAGTATTTTTCACTCTGGTAGCTTTGGGGGATACTATGCC
CGGCATGCATATACAGTACTCCCTACAGTGTTATTGATTTGAGAAGAAGG
ATGATGGAGGGGAGGTGATGGTCGATGATGGAGAGGAATGGGGGGGAGGA
TTGCGGTCGATGGAAAAGAATGATCTACATTCTGATCATATGATGGAAGT
TGAGAAAGTATGGATTGAAAATACGAAGGATGTTGGATTCGATTGGATCT
AGCCTTCTTCAAATCATTTTATTATAATGGACGATATCCGTTCTTCGTCG
TAATCCAGCGGATCTCGATGCGCTCTCTTTGTCATATTGTAAGGAGTGTC
GCTGCCCTGTCTCCGTCATAGTCTAACAAATGTCACTACTCTTAATCATA
GTCATAGTCTATCGAACGATGCTGGCCCGTATAACAGAAATGCTCAAGTA
TCTCCGAGACAACAACTTGTCTATTGACTTGGAAACAATGAATCCGGTGG
AGCTGCCGAAAACCCTCGCGGCGAAGCTGGAAGCGATGTTTCCCTTCCCT
AAGGCGAACGTGAAGGAAAGGTATTGCCTCGGGCCCACCCCGAAGCCTTC
GGAGTTCGTGAACGCTATGCTGGTAAGAGTGCCGGGGTGAAGATGATCGC
TTGGACAGGATGGTGAATGCAACGCGGCAATTGCTCTCATCATTTCAAGT
CAGTCATTGTATTTTATAATTGGTATATTGTGATTAAAGGCACTTTCGTA
GTAGGAACTATTAGTATAAGTATTAGTACAATTCTAATATGTAGGTATAT
AGAGAAAGTGCTTGTTCAAGTGTTGGCAACCCGCTCAACATGCCCAGCCT
TTGGACCCTTTTTGCAGCATTTAAAGATCAGGAGGCTCTTAAGTACCTTT
TTTCTTCTCTCCCCGTTACTGTACTGTACATAATACTGTATAGGTTAGCT
CTGCCTAAACCTCACGGCACACAAGGTTAGGTACTGGCGTCCGACCGATT
TTTATCCCTCCATGCTCGCGTGAACCGTACCGTACCTTGCCTTAACAAGC
TACCATCTTTACCGCACCATATCATACGATACCGTATACCGCCTTAACAT
TCCATCATTCTTACCGTACCGTACCGCCATCAACAGCCACTTCTGCCAGA
GGACGAACCGTGGAACGGCAAGAAGATTCGCCCGCTTCCCGACCTCAAGG
AATTTTTGGTAGCCAATCGACTACACGGAGGGAGCCGTGGCATGATCGTA
ATCACATCGCTGATGATGAAGGCCATGGGCGAGGGAGACTTGTAAGAAAA
ATCAAACGTCATAGCTCTAGACGTGTGTGAGACTCGATTTTGGTGCTTAC
GAGACTCACGGGCTGTAGGCAGGTAGCCCCCCAGCCAGGGGCGGGGAGTA
TTATATATGGTATAGGGTATAGGGTGTATCGCGTACTGTTGGAGGGGGGG
TCGGTGTCTCTCTGGGAGGACAGAGCACGGTGTGATGTCTAGTTATATTA
TTAGTAGTATTTTCGAATGCCTCGCTTCTTGGTGTCTAATGGCCTCTGGT
GCGTGAGTTTGATGTCAGGGACCGCGCCAAGGAACTGAAGGGTGCTGCAA
TCTGCGTCACCAAGGCGGAAAACTCCGTCACAGGCCCCTTCCGACAGGTG
ACAGAAACCAGGCCGGATGTCGGAATTTTTCTTTGTCTCGAGACACGGTC
CTAACGAATCCCCAGTCGCTTTTTTCTTCGATCTGCCTTATCGTTAGGGT
AGTTTTGGGACAAGTATTTCTCGCTATATTATTACAATTGCTTGCCCTTT
GCTCGTTGTTCTATTAGGTTAGGGTTTTGTTGTATTGAGCCTCTCGTTTT
GACAATATTACACGTATGAAGAAGTTGATTAGATTTAACGCCTCGCCACC
AGAAATACGCTTGAGTCTGGGGGCTTGAAGCCTGCCTTGCCTTGCCTTGC
TCCCCACCGACCCCGACCCCGCTGCTCGACGGGGCACATCGTGATGGGCT
TGGGCGTGGCCAACCAGGCGGTGATGTTCGCCGAGAATCGTATGGCGCCT
TGCATGGGCAGCACGGTTTGTGAAGAGTATGCCGGGGTAGACGGGGCTGA
GGCGGCTGCTACCTGGGTGGTGCTCAAGGCTTGTGTCGCGGAGTGGGAGC
TGCGGCTAAGGTGGGATCGTTCGCCATGGGAGAATTATATGTTTGCTTCG
TTTGAGGTGTCAATGAGGTGTCCAAACTGGGCGTCATTCGATTGTGTGTG
GAAGGGGTGGAGGATGTGGAGGAGGGGTCATTGCTCCTTACTATGGAATG
AAGTACACCCTAACCCTAAGCCTTACCTGTTAGCTCTTAAGCCTGTTAAA
CAGAGTTGTGGATTTATCAGTGGCAAAGCAACTATTGAATTGCCGTCGCT
GTGCTATGTCATGCGGAACGTATTTCGTTCCCTTATATTTTTCAACGAAC
TGAAATTGTCGCGGGGCTGTCATCTGGAGCTTTCCCACGTAACTTTCCTA
AGGGGTTAATGTTCTATTGATATTAGAGAACGCATACGTCTTCCCCTTGA
TCTACCGATGATTCACCTGCGTGGTGTTTTCATAAGTTTTTTTAATATAA
TAATCTGAGCACTGTTTTGTTTTTTTGTTGTTTTTGTGTTTTTGTGTTTT
GAAAGGGAGAGCCGCAAGGAAGAGATAGCGTTGCAGGACATCTTCCGCAG
TCTACCCAGCCCTACCGATGGACTAGACGAGGATAGGATCGCCTCCATCA
CGGGGAGTGTGCAGGCCATGGGACAGTCGTTCCGCAATAACCAGAAGCTC
ATGGAGGTGATTCATGATTCGAAGGGATGGGATGGGATGGGACGGCTGAT
TCACGGAGTGCCATAACAGTGAGCCAAAGTATAATGAAATATTATTAATA
GTATAATACAAGTACACTGCCAGGACGATGACGTCATCCGCCGTTGGGAG
GGTAGTGGAAAGCGATAGCGATAGCATCACAGACAACCCTGTAACGGTGA
CGATAAAGCTGGGAGACTACCAGACCTAGTCACACATTCTGAAGCGACTT
ACCACCAATACTTAGCGTTCGAATCGTCGATTACTCGAACGAGCGCGAGG
ACAGGAAACCGAACCGCTTAGATAGGAAAACAGAGAGTGAGGCCGCGCTG
ATGCGCTGCTCCCTCAGAGTTCTTACCTTCTCCCATAGTATAGGAAAGGT
TACGGACAGTATCGAACCGGACCGCTGCGGTTGCGCCGTTCCCTCTCTCG
CCGCTTTTCTCGCACGTAGATCGTCCCTGCGGAGATCAGGTTCATGGAAG
GCGCACTCGGTGTCAACACCACGACGGAAGTGAGGCGGTTCGCGTTGCAA
GATTTTTGCCCCAAGGAAGGCATAGCACCTGAAGATTTGAGGCTCCGCGT
GAGCTCGCTGATCTGCGGGCTGGAGCAGCTGCCGTCCAAGTCCTACCACC
AGCTGCAGGTGATACCGATGATGCTAACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig7452:4420..9901+

>mRNA_H-elongata_contig7452.15135.1 ID=mRNA_H-elongata_contig7452.15135.1|Name=mRNA_H-elongata_contig7452.15135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3546bp|location=Sequence derived from alignment at H-elongata_contig7452:4420..9901+ (Himanthalia elongata Himel1 dioecious)
ATGACGTTGCCCATCAGGCTCATGAGTGCATTGGCCATGGCAGCGTTTAC
TCCCAGGTCTACTCGTTCATTCCTAGCTCCGATAAGTTCCCCTCCGATTA
ACCGACAAGGCTTCCATGCCGTGCCAGCTCGTTCCCCCACACCGGGTGTT
TTTCGCTGTCGAGCGCCGCCTCAGCATCAGCCTCCCTCTTCTGATGGCCC
CGCGAGGTTGGGCCGCGGTAGTGCTGGCGGTGGTCCTATGATGGCGAAGA
AAAAGAATCGCAGCAAGGATACTAAAAAAAACAACGTCGCAGCAGCAGTA
TCACCAACAGCGACAGCGACAGCGGTGGGGACATCGAAGGAGGGTACCGC
AAGTGGCGGCAGCATCCCCGTCGTGGGAAGCGGAAAAGGCGTCGGAGGTG
GCACAACGGTGGCGGAAGTACCGTTACCATTAACTGCGGCGGCAACGGAA
GCGGAAACGGGGGAGGAAGCCTCTACAGCAGGAGCAGGAGCAGGAGCAGC
TAATTCTGACGTGAAGGGATTAACAGCGCCCAAGGCAAAAGGATTTGGCA
CTCCTGTGCCACCGCCCAAGCCCGTACAGAAGGGTATAGGGTCCAACAAG
GGTCCCAAGCCGCCGCCGACCATGCCCATCGCGGCCCAGGGCCAGGGCGA
GTCAGCGCTCCCTCCGCCGCGGCAGCCAGTAGGGGGAATGGACGCACTGG
CTCCCGGGATTCCTGTGACTGGCACAACGGATCATCAGAAGATGACGTTG
CCCATCAGGCTCATGAGTGCATTGGCCATGGCAGCGTTTACTCCCAGGTC
TACTCGTTCATTCCTAGCTCCGATAAGTTCCCCTCCGATTAACCGACAAG
GCTTCCATGCCGTGCCAGCTCGTTCCCCCACACCGGGTGTTTTTCGCTGT
CGAGCGCCGCCTCAGCATCAGCCTCCCTCTTCTGATGGCCCCGCGAGGTT
GGGCCGCGGTAGTGCTGGCGGTGGTCCTATGATGGCGAAGAAAAAGAATC
GCAGCAAGGATACTAAAAAAAACAACGTCGCAGCAGCAGTATCACCAACA
GCGACAGCGACAGCGGTGGGGACATCGAAGGAGGGTACCGCAAGTGGCGG
CAGCATCCCCGTCGTGGGAAGCGGAAAAGGCGTCGGAGGTGGCACAACGG
TGGCGGAAGTACCGTTACCATTAACTGCGGCGGCAACGGAAGCGGAAACG
GGGGAGGAAGCCTCTACAGCAGGAGCAGGAGCAGGAGCAGCTAATTCTGA
CGTGAAGGGATTAACAGCGCCCAAGGCAAAAGGATTTGGCACTCCTGTGC
CACCGCCCAAGCCCGTACAGAAGGGTATAGGGTCCAACAAGGGTCCCAAG
CCGCCGCCGACCATGCCCATCGCGGCCCAGGGCCAGGGCGAGTCAGCGCT
CCCTCCGCCGCGGCAGCCAGTAGGGGGAATGGACGCACTGGCTCCCGGGA
TTCCTGTGACTGGCACAACGGATCATCAGAAGGTGATTACCGAGGCGGAT
TTTTCGTCGCCAGAGCCGGTAACGGCAACCCTGACAGCTACTGCAGGCTC
CAAGGCCGCCGGGGAGGAAGAGGAGATGTCTCCCGTAGGTGATTACCGAG
GCGGATTTTTCGTCGCCAGAGCCGGTAACGGCAACCCTGACAGCTACTGC
AGGCTCCAAGGCCGCCGGGGAGGAAGAGGAGATGTCTCCCGTAGAAATGC
TCAAGTATCTCCGAGACAACAACTTGTCTATTGACTTGGAAACAATGAAT
CCGGTGGAGCTGCCGAAAACCCTCGCGGCGAAGCTGGAAGCGATGTTTCC
CTTCCCTAAGGCGAACGTGAAGGAAAGGTATTGCCTCGGGCCCACCCCGA
AGCCTTCGGAGTTCGTGAACGCTATGCTGAAATGCTCAAGTATCTCCGAG
ACAACAACTTGTCTATTGACTTGGAAACAATGAATCCGGTGGAGCTGCCG
AAAACCCTCGCGGCGAAGCTGGAAGCGATGTTTCCCTTCCCTAAGGCGAA
CGTGAAGGAAAGGTATTGCCTCGGGCCCACCCCGAAGCCTTCGGAGTTCG
TGAACGCTATGCTGCCACTTCTGCCAGAGGACGAACCGTGGAACGGCAAG
AAGATTCGCCCGCTTCCCGACCTCAAGGAATTTTTGGTAGCCAATCGACT
ACACGGAGGGAGCCGTGGCATGATCGTAATCACATCGCTGATGATGAAGG
CCATGGGCGAGGGAGACTTCCACTTCTGCCAGAGGACGAACCGTGGAACG
GCAAGAAGATTCGCCCGCTTCCCGACCTCAAGGAATTTTTGGTAGCCAAT
CGACTACACGGAGGGAGCCGTGGCATGATCGTAATCACATCGCTGATGAT
GAAGGCCATGGGCGAGGGAGACTTGGACCGCGCCAAGGAACTGAAGGGTG
CTGCAATCTGCGTCACCAAGGCGGAAAACTCCGTCACAGGCCCCTTCCGA
CAGGGACCGCGCCAAGGAACTGAAGGGTGCTGCAATCTGCGTCACCAAGG
CGGAAAACTCCGTCACAGGCCCCTTCCGACAGGCGGTGATGTTCGCCGAG
AATCGTATGGCGCCTTGCATGGGCAGCACGGTTTGTGAAGAGTATGCCGG
GGTAGACGGGGCTGAGGCGGCTGCTACCTGGGTGGTGCTCAAGGCTTGTG
TCGCGGAGTGGGAGCTGCGGCTAAGGCGGTGATGTTCGCCGAGAATCGTA
TGGCGCCTTGCATGGGCAGCACGGTTTGTGAAGAGTATGCCGGGGTAGAC
GGGGCTGAGGCGGCTGCTACCTGGGTGGTGCTCAAGGCTTGTGTCGCGGA
GTGGGAGCTGCGGCTAAGGGAGAGCCGCAAGGAAGAGATAGCGTTGCAGG
ACATCTTCCGCAGTCTACCCAGCCCTACCGATGGACTAGACGAGGATAGG
ATCGCCTCCATCACGGGGAGTGTGCAGGCCATGGGACAGTCGTTCCGCAA
TAACCAGAAGCTCATGGAGGGAGAGCCGCAAGGAAGAGATAGCGTTGCAG
GACATCTTCCGCAGTCTACCCAGCCCTACCGATGGACTAGACGAGGATAG
GATCGCCTCCATCACGGGGAGTGTGCAGGCCATGGGACAGTCGTTCCGCA
ATAACCAGAAGCTCATGGAGATCGTCCCTGCGGAGATCAGGTTCATGGAA
GGCGCACTCGGTGTCAACACCACGACGGAAGTGAGGCGGTTCGCGTTGCA
AGATTTTTGCCCCAAGGAAGGCATAGCACCTGAAGATTTGAGGCTCCGCG
TGAGCTCGCTGATCTGCGGGCTGGAGCAGCTGCCGTCCAAGTCCTACCAC
CAGCTGCAGGTGATACCGATGATGCTAACGTGAATCGTCCCTGCGGAGAT
CAGGTTCATGGAAGGCGCACTCGGTGTCAACACCACGACGGAAGTGAGGC
GGTTCGCGTTGCAAGATTTTTGCCCCAAGGAAGGCATAGCACCTGAAGAT
TTGAGGCTCCGCGTGAGCTCGCTGATCTGCGGGCTGGAGCAGCTGCCGTC
CAAGTCCTACCACCAGCTGCAGGTGATACCGATGATGCTAACGTGA
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