prot_H-elongata_contig74482.15133.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74482.15133.1
Unique Nameprot_H-elongata_contig74482.15133.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length144
Homology
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A0A9XJD8_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XJD8_LYGHE)

HSP 1 Score: 62.4 bits (150), Expect = 1.330e-9
Identity = 41/122 (33.61%), Postives = 60/122 (49.18%), Query Frame = 0
Query:   21 LTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRR 142
            L N A+S     Q    LS  +AEY+A+      A A+K +L  V        A+++Y DN+GA ALT NP     +KH+D+    +R  V  G + +  V +     DIL KPL  +  R+
Sbjct:    5 LGNAAISWESRKQRTVALSSCEAEYMALAEASKEATALKRILREVTG---VNGAVNLYNDNQGAIALTENPVHHRRTKHIDIRYHFVRETVERGDVSIKYVPTEHMVADILTKPLPRQQVRK 123          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: UPI0014487C49 (secreted RxLR effector protein 161-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI0014487C49)

HSP 1 Score: 60.8 bits (146), Expect = 1.700e-8
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 0
Query:   11 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRH 143
            R+S SG   +L++ A+S S   Q   +LSM +AEYVA+       + +K  L+ +         + +Y DNE   + T +P+     KH+D+  +  R +VR   + V  V +     D L +PL  +AF RH
Sbjct:   70 RKSTSGYVFLLSDGAISWSSKKQSSVSLSMMEAEYVALASAAQEVVWLKKFLEHLLDIAENIEPVLVYYDNEATISSTKDPKFHCKIKHIDIKYNSARDMVRREVVNVKYVSTKDMLADSLTEPLSRDAFVRH 202          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7V287_CUCME (Integrase, catalytic core n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7V287_CUCME)

HSP 1 Score: 62.0 bits (149), Expect = 1.810e-8
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 0
Query:   11 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            R++ SG   ML+  A+S S   Q  FTLS ++AE++A T     A+ +K +L+ +Q +     +I +Y DN     L+ NP     SKH+DV    LR L + G I V    S  Q  +I+ KPL    F++ R
Sbjct:  186 RKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQE--GSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFR 317          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A5A7UQ30_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UQ30_CUCME)

HSP 1 Score: 60.1 bits (144), Expect = 8.280e-8
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   11 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            R+S S    M+++  +S     Q  FTLS ++AE+VA T     A+ +K +L+ +  +     A  +Y DN  A  L+ NP     SKH+DV    LR L R G I ++   S  Q  DI+ KPL   AF++ R
Sbjct:  247 RKSTSRYVFMMSSAKISWCSKNQPIFTLSTTEAEFVAATVCTCQAIWLKKILEELYFKQE--GATKVYCDNSSAIKLSKNPVLHKRSKHIDVKFHFLRDLTRDGVIELYYCKSEDQIADIMTKPLKLPAFQKLR 378          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A4U0W4R2_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0W4R2_9BASI)

HSP 1 Score: 58.5 bits (140), Expect = 3.370e-7
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 0
Query:   12 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            RS  G   +L + AVS S   Q   T S ++AEY+ ++H    A+ +  +L  +  R      I+++ DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D++ K +   AF +HR
Sbjct:  962 RSTMGYTFVLASGAVSWSSKLQPRVTASSTEAEYLGLSHASKEAIHLSQLLSELAQRSG--RPIELFCDNQGANALSRDPQFHNRTRHLRLTEHFVREQVQQGDITVTYIPTARMVADVMTKSIPLPAFIQHR 1092          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A507DAW5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DAW5_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 8.410e-7
Identity = 37/130 (28.46%), Postives = 66/130 (50.77%), Query Frame = 0
Query:   16 GVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLD-FVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            G  A+L + A+S   T      LS ++AEY++   +  +   I++ ++ +    +     + ++EDN        N   S+ SKH++V    +R LV   Q+ +  + +A Q  D+L KPLG +AF +HR
Sbjct:  833 GYLALLADGAISWKSTKTPIVPLSSTEAEYMS---ISELGREIQSFINLYTALDIPVTMPLTLFEDNMSTIHQCNNDVFSHRSKHINVRYHYIRELVNTKQVTITYIKTADQPADLLTKPLGRDAFSKHR 959          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KQR7_RHOTO (Gag-Pol polyprotein n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KQR7_RHOTO)

HSP 1 Score: 57.0 bits (136), Expect = 1.050e-6
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 0
Query:   12 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            RS  G   +L N AVS S   Q   T S+++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct:  371 RSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 501          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KRA9_RHOTO (Copia-type polyprotein (Fragment) n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KRA9_RHOTO)

HSP 1 Score: 57.0 bits (136), Expect = 1.210e-6
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 0
Query:   12 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            RS  G   +L N AVS S   Q   T S+++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct: 2702 RSTMGYVFLLANGAVSWSSKLQPRVTASLTEAEYLGLSHACKETVYLTQLLG--ELGFPAEGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 2832          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A511KB67_RHOTO (Gag-Pol polyprotein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB67_RHOTO)

HSP 1 Score: 56.2 bits (134), Expect = 2.090e-6
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0
Query:   12 RSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR 144
            RS  G   +L N AVS S   Q   T S ++AEY+ ++H     + +  +L   +       A  +Y DN+GA AL+ +PQ    ++HL +    +R  V+ G I V  + +A    D + K L    F RHR
Sbjct:  707 RSTMGYVFLLANGAVSWSSKLQPRVTASSTEAEYLGLSHACKETVYLTQLLG--ELGFPAKGAAVLYGDNQGANALSKDPQFHNRTRHLRLTEHFVREQVQDGSICVEYIPTARMLADAMTKSLPAPLFERHR 837          
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Match: A0A284RHR7_ARMOS (Integrase catalytic domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284RHR7_ARMOS)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-6
Identity = 41/133 (30.83%), Postives = 61/133 (45.86%), Query Frame = 0
Query:   11 RRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTHVENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHLDVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRH 143
            RRS SG A  L    VS S + Q   +LS +++EY+A+TH+    L IK  L  +    T      M  DN+ +  +  +   S   KH+D+    +R  +R G      + +     DIL KPLG    + H
Sbjct: 1562 RRSFSGYAIFLYGGLVSWSASKQKSTSLSSTESEYMALTHLMKELLWIKLFLTSLSLPFTL--PFPMLSDNDSSLTIANSLSQSARLKHVDIRYHFIREHIRAGTFSTTWIPTRSMTADILTKPLGTVLHQAH 1692          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74482.15133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A0A9XJD8_LYGHE1.330e-933.61Copia protein (Fragment) n=1 Tax=Lygus hesperus Ta... [more]
UPI0014487C491.700e-830.83secreted RxLR effector protein 161-like n=1 Tax=Ni... [more]
A0A5A7V287_CUCME1.810e-835.07Integrase, catalytic core n=2 Tax=Cucumis melo var... [more]
A0A5A7UQ30_CUCME8.280e-835.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A4U0W4R2_9BASI3.370e-730.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A507DAW5_9FUNG8.410e-728.46DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A511KQR7_RHOTO1.050e-631.58Gag-Pol polyprotein n=2 Tax=Rhodosporidium toruloi... [more]
A0A511KRA9_RHOTO1.210e-631.58Copia-type polyprotein (Fragment) n=1 Tax=Rhodospo... [more]
A0A511KB67_RHOTO2.090e-631.58Gag-Pol polyprotein n=1 Tax=Rhodosporidium toruloi... [more]
A0A284RHR7_ARMOS2.200e-630.83Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74482contigH-elongata_contig74482:7..438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74482.15133.1mRNA_H-elongata_contig74482.15133.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74482 7..465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74482.15133.1 ID=prot_H-elongata_contig74482.15133.1|Name=mRNA_H-elongata_contig74482.15133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MDNANNRCNYRRSVSGVAAMLTNKAVSASITTQHFFTLSMSDAEYVAMTH
VENIALAIKAVLDFVQPRLTCCSAIDMYEDNEGAKALTGNPQGSYLSKHL
DVCLDCLRRLVRLGQIIVHSVDSAGQNTDILPKPLGHEAFRRHR
back to top