prot_H-elongata_contig74435.15129.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig74435.15129.1
Unique Nameprot_H-elongata_contig74435.15129.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length128
Homology
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BLAST of mRNA_H-elongata_contig74435.15129.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.150e-22
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 0 
Query:   23 TFERCVVIGNRAEATGGAIKSATCFTAITNTTFRGNEALNGGALRLSGTTAIDVCIFEENISELDGGQAISFIGSGLVMKDCTFSKNAYDCDEGTFLN 120
            TF+ C  I NRA ATGGAI SA    A  N+TF+GN A  GG LRL+GT ++D C F +NIS+  GG A+S IGS L +++ TFS N +DCD G +L+
Sbjct:  652 TFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLD 749
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74435.15129.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G301_ECTSI3.150e-2253.06Polymorphic Outer membrane protein G/I family n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 5..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74435contigH-elongata_contig74435:820..1203 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74435.15129.1mRNA_H-elongata_contig74435.15129.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig74435 820..1269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig74435.15129.1 ID=prot_H-elongata_contig74435.15129.1|Name=mRNA_H-elongata_contig74435.15129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
LVKTGGTIFITGSSTSYVEVSATFERCVVIGNRAEATGGAIKSATCFTAI
TNTTFRGNEALNGGALRLSGTTAIDVCIFEENISELDGGQAISFIGSGLV
MKDCTFSKNAYDCDEGTFLNETGVSFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence