mRNA_H-elongata_contig74435.15129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74435.15129.1
Unique NamemRNA_H-elongata_contig74435.15129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74435.15129.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 5.130e-22
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   67 TFERCVVIGNRAEATGGAIKSATCFTAITNTTFRGNEALNGGALRLSGTTAIDVCIFEENISELDGGQAISFIGSGLVMKDCTFSKNAYDCDEGTFLN 360
            TF+ C  I NRA ATGGAI SA    A  N+TF+GN A  GG LRL+GT ++D C F +NIS+  GG A+S IGS L +++ TFS N +DCD G +L+
Sbjct:  652 TFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLD 749
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74435.15129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G301_ECTSI5.130e-2253.06Polymorphic Outer membrane protein G/I family n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74435contigH-elongata_contig74435:820..1269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue5.3e-20
Seed eggNOG ortholog2880.D7G301
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.6309998-CDS-H-elongata_contig74435:819..12031622931148.6309998-CDS-H-elongata_contig74435:819..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74435 820..1203 +
1691679718.440078-CDS-H-elongata_contig74435:819..12031691679718.440078-CDS-H-elongata_contig74435:819..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74435 820..1203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.6447124-UTR-H-elongata_contig74435:1203..12691622931148.6447124-UTR-H-elongata_contig74435:1203..1269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74435 1204..1269 +
1691679718.450982-UTR-H-elongata_contig74435:1203..12691691679718.450982-UTR-H-elongata_contig74435:1203..1269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74435 1204..1269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74435.15129.1prot_H-elongata_contig74435.15129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74435 820..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74435.15129.1

>prot_H-elongata_contig74435.15129.1 ID=prot_H-elongata_contig74435.15129.1|Name=mRNA_H-elongata_contig74435.15129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
LVKTGGTIFITGSSTSYVEVSATFERCVVIGNRAEATGGAIKSATCFTAI
TNTTFRGNEALNGGALRLSGTTAIDVCIFEENISELDGGQAISFIGSGLV
MKDCTFSKNAYDCDEGTFLNETGVSFG*
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mRNA from alignment at H-elongata_contig74435:820..1269+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74435.15129.1 ID=mRNA_H-elongata_contig74435.15129.1|Name=mRNA_H-elongata_contig74435.15129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig74435:820..1269+ (Himanthalia elongata Himel1 dioecious)
TTGGTCAAAACGGGTGGCACTATATTCATTACCGGAAGTAGTACATCATA
TGTCGAAGTGTCGGCCACGTTTGAGAGATGTGTGGTCATCGGCAACAGGG
CAGAGGCGACCGGAGGGGCAATCAAGAGCGCGACTTGCTTCACTGCCATC
ACGAACACAACCTTTAGAGGCAACGAGGCTCTAAATGGGGGGGCTCTAAG
ACTTTCTGGCACGACAGCGATAGACGTGTGCATATTTGAAGAAAATATTT
CGGAGCTAGACGGCGGGCAGGCGATATCATTCATTGGGTCCGGATTGGTA
ATGAAGGACTGCACATTCAGCAAAAACGCCTATGATTGCGACGAAGGGAC
GTTTTTGAATGAAACTGGGGTAAGCTTTGGGTAATACTGTGTAGTAATTT
TAAAAGTTATATTATTGTTTTCAACTCGCTCTACGCTGCATCTAGTTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig74435:820..1269+

>mRNA_H-elongata_contig74435.15129.1 ID=mRNA_H-elongata_contig74435.15129.1|Name=mRNA_H-elongata_contig74435.15129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig74435:820..1269+ (Himanthalia elongata Himel1 dioecious)
TTGGTCAAAACGGGTGGCACTATATTCATTACCGGAAGTAGTACATCATA
TGTCGAAGTGTCGGCCACGTTTGAGAGATGTGTGGTCATCGGCAACAGGG
CAGAGGCGACCGGAGGGGCAATCAAGAGCGCGACTTGCTTCACTGCCATC
ACGAACACAACCTTTAGAGGCAACGAGGCTCTAAATGGGGGGGCTCTAAG
ACTTTCTGGCACGACAGCGATAGACGTGTGCATATTTGAAGAAAATATTT
CGGAGCTAGACGGCGGGCAGGCGATATCATTCATTGGGTCCGGATTGGTA
ATGAAGGACTGCACATTCAGCAAAAACGCCTATGATTGCGACGAAGGGAC
GTTTTTGAATGAAACTGGGGTAAGCTTTGGGTAATTGGTCAAAACGGGTG
GCACTATATTCATTACCGGAAGTAGTACATCATATGTCGAAGTGTCGGCC
ACGTTTGAGAGATGTGTGGTCATCGGCAACAGGGCAGAGGCGACCGGAGG
GGCAATCAAGAGCGCGACTTGCTTCACTGCCATCACGAACACAACCTTTA
GAGGCAACGAGGCTCTAAATGGGGGGGCTCTAAGACTTTCTGGCACGACA
GCGATAGACGTGTGCATATTTGAAGAAAATATTTCGGAGCTAGACGGCGG
GCAGGCGATATCATTCATTGGGTCCGGATTGGTAATGAAGGACTGCACAT
TCAGCAAAAACGCCTATGATTGCGACGAAGGGACGTTTTTGAATGAAACT
GGGGTAAGCTTTGGGTAA
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