mRNA_H-elongata_contig119612.1513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119612.1513.1
Unique NamemRNA_H-elongata_contig119612.1513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.450e-36
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPCA 201
            KVADVSHPMKPW+LH+RWT+LIT+EFHRQGD E E G+P+SPLCSREGHNQAKSQCDF+NFVVRPCA
Sbjct:  529 KVADVSHPMKPWDLHERWTRLITEEFHRQGDLEAEKGVPVSPLCSREGHNQAKSQCDFVNFVVRPCA 595
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A7S3XSI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSI7_HETAK)

HSP 1 Score: 103 bits (258), Expect = 4.720e-25
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSRE-GHNQAKSQCDFINFVVRPC 198
            K ADV HP KPW LH RW++LI +EF RQGD E+  G+PISPLC R  G N AKSQCDF++FVVRPC
Sbjct:  252 KCADVGHPAKPWALHARWSRLIAEEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPC 318
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.080e-24
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPC 198
            KVADV+HP KPWE+H +W++L+T+EF +QGD+E   G+ +SPLC R   N  KSQCDFI+F+VRPC
Sbjct:  653 KVADVAHPCKPWEVHHKWSELVTEEFFKQGDKEAARGLAVSPLCDRRDQNLPKSQCDFIDFIVRPC 718
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.910e-24
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPC 198
            KVADVSH  KPW++H+RW+ +IT+EF +QGD E+  G+ ISPLC R   N AKSQCDFI+F+VRPC
Sbjct: 1731 KVADVSHATKPWDIHRRWSDMITEEFFKQGDLERGQGLQISPLCDRAQGNLAKSQCDFIDFIVRPC 1796
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A7S3XXI8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXI8_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 9.250e-21
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPC 198
            K AD+ HP +PW++H +WT LI++EF  QG REKE G+PIS LC R      KSQCDFINF+V+PC
Sbjct:  123 KCADICHPSRPWDIHCQWTHLISEEFFAQGAREKEEGLPISFLCDRATVVLPKSQCDFINFLVKPC 188
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A8C9W8X0_SCLFO (Phosphodiesterase n=15 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9W8X0_SCLFO)

HSP 1 Score: 93.6 bits (231), Expect = 9.690e-21
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    7 ADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRP 195
            AD+SHP+KPW LH RWTK + +EF RQGDREK +G+P+SPLC R+    A+SQ  FI+F+V P
Sbjct:  397 ADISHPIKPWRLHSRWTKALMEEFFRQGDREKVLGLPLSPLCDRKNTLVAQSQIGFISFIVDP 459
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A7S1C4N6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4N6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.890e-20
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPC 198
            K ADV HP +P  LH++W+ LI+ EFH QGD+E+ +G+PISPLC R+  + AKSQ  FI FVVRPC
Sbjct:  808 KCADVGHPARPLPLHEKWSNLISREFHMQGDKERVLGLPISPLCDRDNFDLAKSQQGFIEFVVRPC 873
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A7S3XSN1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSN1_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 2.210e-20
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 KVADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRPC 198
            K AD+ HP KPW LH++W+ LIT EF  QG RE   G+P+SPLC +   +  KSQC+FI+F+VRPC
Sbjct:   48 KCADICHPAKPWALHEQWSDLITREFFAQGAREARAGLPVSPLCDQAKVDIPKSQCNFIDFLVRPC 113
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: A0A3B3R7W7_9TELE (Phosphodiesterase n=3 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3R7W7_9TELE)

HSP 1 Score: 92.4 bits (228), Expect = 2.330e-20
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    7 ADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRP 195
            AD+SHP KPW LH RWTK + +EF RQGD+E+E+G+P+SPLC R+    A+SQ  FI+F+V P
Sbjct:  349 ADISHPTKPWALHSRWTKALMEEFFRQGDKEEELGLPLSPLCDRKNTLVAQSQIGFIDFIVDP 411
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BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Match: UPI001E1DEF74 (calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like isoform X1 n=14 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEF74)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-20
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    7 ADVSHPMKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDFINFVVRP 195
            AD+SHP K W++HKRWT L+ +EF RQGDRE+E+G+P SPLC R+    A+SQ  FI+F+V P
Sbjct:  560 ADISHPAKDWDIHKRWTDLLLEEFFRQGDREQELGLPFSPLCDRKNTLVAESQIGFIDFIVEP 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119612.1513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTM6_ECTSI2.450e-3685.07Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XSI7_HETAK4.720e-2567.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7G4U4_ECTSI3.080e-2460.61Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z5P1_9STRA7.910e-2463.64Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S3XXI8_HETAK9.250e-2159.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8C9W8X0_SCLFO9.690e-2160.32Phosphodiesterase n=15 Tax=Scleropages formosus Ta... [more]
A0A7S1C4N6_9STRA1.890e-2059.09Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3XSN1_HETAK2.210e-2056.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3B3R7W7_9TELE2.330e-2058.73Phosphodiesterase n=3 Tax=Paramormyrops kingsleyae... [more]
UPI001E1DEF742.570e-2058.73calcium/calmodulin-dependent 3',5'-cyclic nucleoti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119612contigH-elongata_contig119612:144..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D8LTM6
Preferred namepde-3
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
EggNOG free text desc.calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3688@1,KOG3688@2759
EC3.1.4.17,3.1.4.53
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size201
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119612.1513.1prot_H-elongata_contig119612.1513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119612 144..938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.533165-CDS-H-elongata_contig119612:143..2741622929700.533165-CDS-H-elongata_contig119612:143..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119612 144..274 -
1691679124.0870695-CDS-H-elongata_contig119612:143..2741691679124.0870695-CDS-H-elongata_contig119612:143..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119612 144..274 -
1622929700.5535755-CDS-H-elongata_contig119612:892..9381622929700.5535755-CDS-H-elongata_contig119612:892..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119612 893..938 -
1691679124.1012607-CDS-H-elongata_contig119612:892..9381691679124.1012607-CDS-H-elongata_contig119612:892..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119612 893..938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.5688872-UTR-H-elongata_contig119612:938..9621622929700.5688872-UTR-H-elongata_contig119612:938..962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119612 939..962 -
1691679124.1104937-UTR-H-elongata_contig119612:938..9621691679124.1104937-UTR-H-elongata_contig119612:938..962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119612 939..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119612.1513.1

>prot_H-elongata_contig119612.1513.1 ID=prot_H-elongata_contig119612.1513.1|Name=mRNA_H-elongata_contig119612.1513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MKPWELHKRWTKLITDEFHRQGDREKEMGIPISPLCSREGHNQAKSQCDF
INFVVRPCA
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mRNA from alignment at H-elongata_contig119612:144..962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119612.1513.1 ID=mRNA_H-elongata_contig119612.1513.1|Name=mRNA_H-elongata_contig119612.1513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=819bp|location=Sequence derived from alignment at H-elongata_contig119612:144..962- (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGGACGTGTCTCATCCTATGAAACCGTGGGAGTTGCATAAGAG
GTGGACGAAGCTTATCACAGGTGGGCAGGGAGAACTGGAGGCTTGTGGTG
TGATGTGCTACATGAGAGGGAGTTCCACGATTGGCGATGGAGGAGGGGTG
ATATTAATCCGTCCCCGAGTTATAAGGCGGAACGGTATCTTAATAGTCTC
TCCATCCCTCCCTCCCTCCCGGGGATTCGGGCTGCTTATTCCCGATTATT
AAGTGGCGAGTATGTTCCAAACATGAGGCATTTTTACCAGGGGATTAATC
GATTTGTCCACGGTAGGGGATAATTTCGTGCTATCCCCGTTTTGCTCGGG
TACTGGTTCGCCCCCTCGTCCATCATGTCCATATAGTCGAATAATCGATA
TACTTCTGGGGTTCGGAGTGGAAAGGCCGTTCTATCCCCGACTCCGACTT
AGACGCGCCTTTCCCCCCCCCCCGTAGGCGGCAGATCTATGCACACACGA
AGGGGACGACGCAGGAGTCGGGACTGCCAACACGCGCTGATCCTCGAAAA
TAATCGCACGCAAAGACACCTTTTGTCTGCATTGTCGTAATCTTCGTTTG
TTCTCTCTTATCTTGGGATGATATTTTTTTCCCCCGTCTCGGTTACGACG
AGTCCCGCGATCCCCACGTGGCGCCGTGCTTCTCTCAGACGAGTTCCATC
GACAAGGCGACCGCGAAAAGGAGATGGGGATTCCAATATCCCCGCTCTGC
AGCCGAGAAGGACACAACCAGGCAAAGAGTCAGTGCGACTTCATCAACTT
CGTGGTACGACCGTGCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig119612:144..962-

>mRNA_H-elongata_contig119612.1513.1 ID=mRNA_H-elongata_contig119612.1513.1|Name=mRNA_H-elongata_contig119612.1513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig119612:144..962- (Himanthalia elongata Himel1 dioecious)
ATGAAACCGTGGGAGTTGCATAAGAGGTGGACGAAGCTTATCACAGATGA
AACCGTGGGAGTTGCATAAGAGGTGGACGAAGCTTATCACAGACGAGTTC
CATCGACAAGGCGACCGCGAAAAGGAGATGGGGATTCCAATATCCCCGCT
CTGCAGCCGAGAAGGACACAACCAGGCAAAGAGTCAGTGCGACTTCATCA
ACTTCGTGGTACGACCGTGCGCGACGAGTTCCATCGACAAGGCGACCGCG
AAAAGGAGATGGGGATTCCAATATCCCCGCTCTGCAGCCGAGAAGGACAC
AACCAGGCAAAGAGTCAGTGCGACTTCATCAACTTCGTGGTACGACCGTG
CGCG
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