mRNA_H-elongata_contig74340.15121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74340.15121.1
Unique NamemRNA_H-elongata_contig74340.15121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.730e-32
Identity = 69/96 (71.88%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 TKCAQRFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRDTGPGGLYAWAGQGGDHDAMAKXXXXXXANLKKKE-KKRFGSLV 285
            T   +RFVND  MILGR RTGLCAKCQRKV  T+KAARQMGL+PTVSD+E+RDTGPGGLYAWAG+ GDHDAMAK         KK E KKRFGSL 
Sbjct:  305 TPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEVRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSETKKRFGSLA 400
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A836CMS6_9STRA (Ribosomal protein S18-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.360e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   13 QRFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIR 156
            +RF + +AMI+ R RTGLCA+CQRKV RT+K AR MG IP +  + ++
Sbjct:   55 KRFSSASAMIMPRRRTGLCARCQRKVARTVKRARHMGAIPYIGTYGVK 102
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A7S2E188_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E188_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-6
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   19 FVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRD 159
             ++ T MI  R  TGLCAKCQRK ++TIK ARQ+G+IP V ++  RD
Sbjct:  160 LISPTGMIRPRRHTGLCAKCQRKASKTIKLARQLGMIPFVQEYRTRD 206
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A2W4MZ57_9ACTN (30S ribosomal protein S18 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2W4MZ57_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.780e-5
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   13 QRFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVS 141
            +++++D A I GR  TGLC KCQRKV R IK AR+M L+P +S
Sbjct:   46 RKYMSDRAKIRGRRVTGLCPKCQRKVARAIKNAREMALLPYIS 88
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A1F4ZC80_9BACT (30S ribosomal protein S18 n=1 Tax=Candidatus Amesbacteria bacterium RIFCSPLOWO2_01_FULL_48_25 TaxID=1797259 RepID=A0A1F4ZC80_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-5
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   16 RFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVS 141
            R+V+D   ILG++RTG+CAK QRK+ R+IK +RQM ++P V+
Sbjct:   32 RYVSDRGRILGKDRTGVCAKHQRKLARSIKRSRQMAMMPFVA 73
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A1F7YXM6_9BACT (30S ribosomal protein S18 n=1 Tax=Candidatus Woesebacteria bacterium RIFCSPHIGHO2_01_FULL_44_21 TaxID=1802503 RepID=A0A1F7YXM6_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.110e-5
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 RFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIP 132
            R +ND A ILGR RTG+ AK QRK++R IK AR +GL+P
Sbjct:   20 RLMNDRAKILGRKRTGIPAKAQRKISREIKRARHLGLLP 58
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BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Match: A0A1F4YD14_9BACT (30S ribosomal protein S18 n=1 Tax=Candidatus Amesbacteria bacterium RIFCSPHIGHO2_01_FULL_48_32b TaxID=1797253 RepID=A0A1F4YD14_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.930e-5
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   16 RFVNDTAMILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVS 141
            ++V+D   ILG+NRTG+CAK QRK+ + IK AR++ L+P V+
Sbjct:   32 KYVSDRGRILGKNRTGVCAKHQRKLAKAIKRAREVALLPFVA 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74340.15121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2B0_ECTSI1.730e-3271.88Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
A0A836CMS6_9STRA2.360e-754.17Ribosomal protein S18-domain-containing protein n=... [more]
A0A7S2E188_9STRA1.440e-655.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2W4MZ57_9ACTN1.780e-555.8130S ribosomal protein S18 n=1 Tax=Actinomycetia ba... [more]
A0A1F4ZC80_9BACT3.100e-554.7630S ribosomal protein S18 n=1 Tax=Candidatus Amesb... [more]
A0A1F7YXM6_9BACT3.110e-561.5430S ribosomal protein S18 n=1 Tax=Candidatus Woese... [more]
A0A1F4YD14_9BACT7.930e-552.3830S ribosomal protein S18 n=1 Tax=Candidatus Amesb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74340contigH-elongata_contig74340:285..2640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog2880.D7G2B0
EggNOG free text desc.Ribosomal protein S18
EggNOG OGs2C22N@1,2S2QV@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1587
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74340.15121.1prot_H-elongata_contig74340.15121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74340 321..1341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.0324254-UTR-H-elongata_contig74340:284..3201622931148.0324254-UTR-H-elongata_contig74340:284..320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74340 285..320 +
1691679718.1731572-UTR-H-elongata_contig74340:284..3201691679718.1731572-UTR-H-elongata_contig74340:284..320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74340 285..320 +
1622931148.0824492-UTR-H-elongata_contig74340:1341..26401622931148.0824492-UTR-H-elongata_contig74340:1341..2640Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74340 1342..2640 +
1691679718.2026517-UTR-H-elongata_contig74340:1341..26401691679718.2026517-UTR-H-elongata_contig74340:1341..2640Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74340 1342..2640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.0513043-CDS-H-elongata_contig74340:320..4801622931148.0513043-CDS-H-elongata_contig74340:320..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74340 321..480 +
1691679718.1841743-CDS-H-elongata_contig74340:320..4801691679718.1841743-CDS-H-elongata_contig74340:320..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74340 321..480 +
1622931148.0664618-CDS-H-elongata_contig74340:1249..13411622931148.0664618-CDS-H-elongata_contig74340:1249..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74340 1250..1341 +
1691679718.1932442-CDS-H-elongata_contig74340:1249..13411691679718.1932442-CDS-H-elongata_contig74340:1249..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74340 1250..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74340.15121.1

>prot_H-elongata_contig74340.15121.1 ID=prot_H-elongata_contig74340.15121.1|Name=mRNA_H-elongata_contig74340.15121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MILGRNRTGLCAKCQRKVTRTIKAARQMGLIPTVSDFEIRDTGPGGLYAW
AGQGGDHDAMAKAKAVAEANLKKKEKKRFGSLV*
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mRNA from alignment at H-elongata_contig74340:285..2640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74340.15121.1 ID=mRNA_H-elongata_contig74340.15121.1|Name=mRNA_H-elongata_contig74340.15121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2356bp|location=Sequence derived from alignment at H-elongata_contig74340:285..2640+ (Himanthalia elongata Himel1 dioecious)
ACAAAATGTGCGCAAAGGTTCGTAAATGACACGGCAATGATTCTCGGGCG
GAACCGCACGGGCCTATGCGCCAAGTGTCAGAGGAAGGTGACGAGGACGA
TCAAGGCCGCGCGCCAGATGGGTCTTATCCCTACCGTTAGCGATTTCGAA
ATCAGGGACACCGGCCCGGGGGGGCTCTACGCGTGGGCTGGACAAGGTGG
GACCCGGCGAAGTTCCAGTGATTTTATTTTATTTTGGTGGGGGGGAGGAG
CAGTCAGGATATGGAGGTGATGCGCCGTGAGGATTAAGCTAATGATTTCG
GTAACCATACAATAACCATTCTAGCAGGCGCTTCGCACACGTACCAAGCA
TCTCATGCGTGAATATGTAAGTTAAGGGAGAAGACGACTCGTGGTAGGCG
GGTTCGTTGAATTTGAGAACCCTTTTGGTGTTCCCTTGCCGAGGACCCGG
CGACGAACATCGGCCCGAATCGATCGCTTTTTTTCTGTAGGGTGTCGTTG
TGGTTCGACCTTGTGTCGATGAACGCACTTCACACGATTGATTCACGATG
CGCCCATGTGTTGACGCTCCAAGGCCCCTTTGTACGTGCAGGCGAAATAT
CCCCTCTTTCGGATCGTCTTAAATCTTATCCGGGCTGTTTTCTTCGTCGT
CAGTCGACCTCAAACAAAACTTTCAAGCACTCCGTGAATGTTTAACATTT
TCTTGGGAGTACACAAGCTTCCACTCCAGAGGGAAGGGGAAACGCCCCCA
CGATCCCCCCTCCGGAAATGCAAAATCTTTCGATAGCTTCAAAATGATCG
AAGGACATAAATGATTCAATTTTAATACTGATATACAGTATATTTTTTTT
GTCTTTTTTTTCCCTTTGGTTCGGTAGTAGCCTTCGCACTACCTGAACAA
AAAGGATCCTGTACTGTTCTTTACGCCGTTTTTTTTTTTTTTGCCGCTGC
TCCCCGAGAATCCAGGCGGCGACCACGACGCTATGGCAAAGGCAAAGGCA
GTGGCAGAAGCAAATCTCAAGAAGAAAGAGAAGAAGCGCTTCGGCTCTCT
CGTATAGTGCGAGGGTACGGACGCAAGCTCTCGGATCGAAGGCTGACAAG
ATGCTGTATTTCTGCATTTTTCTCTCGTGCGCTGACGGAAAGCTTCTCGC
GAGAAAAACGCGGCAAGAACGCGTGCCCGAATCTGGTAGCAACCGGGGAA
GGGTCTCGCAATCTATAATGATCATCGGGCGATCTTCTGAAACATGCTCA
TCGCGAATCACGCCTAAGACTTGCGGAATGTGGCGCCAGTGTGACCCTCG
GCCCGGCCCGACCTGGCATACCTGCCTATTACGCCTCTAATTTTGAAAGT
CTTTGCCACCAGCGATTCTAGATTTGACCCAGCTGTTCTTCCAACACGTG
CATGGTCGGAAAACCGCGAGCATCGCAAGTGCGCTACCCGCCTTTTGAAG
CACCACACGAATCTGGAGAGGGGAATATCGAATCCAAATCGTCACGTGTT
GTACTCTTTCAGGCAAAAACAAAATTATCTATTTTCAACCACCGCCGTTG
GTGTGTCGACAGCGGGGGATGCAAAACGTCTGTATGATGCTTGTCCGCCT
AGAGTTCGTAGTGAAAATGAAAGCCGTAATAAACCGGGCAAAGCAGCCTG
CCTCATCGCGTATATGTATGAGGGTATATATCCGAGTCAGCGCTGACTAC
GAGTGGGAAGAAACGAATTAGAGGAAGGGCGCGCAGTTCGCAGTTTTTCC
GATTGGTCGACGTAAGGCTGCACTGAGGGAGTTCGATTTCATTTGTATGT
ATGTATGTATGGTCACATATTTAGCAGAAATATCAACCAGGTTTGGTAGC
TTTCTGCTCGTGGTCAGCTGATCAGGGAAAATCATTTCCCCCTTTCCCCG
TTCGTGCCTGAAAAATTGGTCTCGCGAGACGGCTTCAACATCAATTCCGT
CCCGCGTCAGCCTGCTCATTCTCCCGGGATCCTCTCGATCCTCCCGTTTT
CCGCGACGACGGCGTCCATCTTTACCGTTAACCGCCATCGGGTCAATCCC
GATTTCATCAGGTCACGCATTTGCGTACCGATGGCGTTGCTGAACCCGTC
TTGCGAGACGAAATTCTCACGCGCGAACGGGGACAGGGGGAAATTATTTT
CTTTGTTCAGCTAACCACGAGCAGAAGGCATCCAAATCTGATTGATCTTC
TGCTGAATGTGAGACCAACAACAACTGATTTGATTGAATTGATTGAATTC
TCACATAAGCTCATGTCAAAATCCAGCCCGTGGTCACAAGGTAGAAAAAG
CACCATCCGGAAGGAGAAAACCGTTCAAGGTACTCTCCAATACAAAAGGA
AACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig74340:285..2640+

>mRNA_H-elongata_contig74340.15121.1 ID=mRNA_H-elongata_contig74340.15121.1|Name=mRNA_H-elongata_contig74340.15121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig74340:285..2640+ (Himanthalia elongata Himel1 dioecious)
ATGATTCTCGGGCGGAACCGCACGGGCCTATGCGCCAAGTGTCAGAGGAA
GGTGACGAGGACGATCAAGGCCGCGCGCCAGATGGGTCTTATCCCTACCG
TTAGCGATTTCGAAATCAGGGACACCGGCCCGGGGGGGCTCTACGCGTGG
GCTGGACAAGATGATTCTCGGGCGGAACCGCACGGGCCTATGCGCCAAGT
GTCAGAGGAAGGTGACGAGGACGATCAAGGCCGCGCGCCAGATGGGTCTT
ATCCCTACCGTTAGCGATTTCGAAATCAGGGACACCGGCCCGGGGGGGCT
CTACGCGTGGGCTGGACAAGGCGGCGACCACGACGCTATGGCAAAGGCAA
AGGCAGTGGCAGAAGCAAATCTCAAGAAGAAAGAGAAGAAGCGCTTCGGC
TCTCTCGTATAGGCGGCGACCACGACGCTATGGCAAAGGCAAAGGCAGTG
GCAGAAGCAAATCTCAAGAAGAAAGAGAAGAAGCGCTTCGGCTCTCTCGT
ATAG
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