mRNA_H-elongata_contig74303.15119.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: D7FT22_ECTSI (OSJNBb0118P14.3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT22_ECTSI) HSP 1 Score: 127 bits (320), Expect = 1.790e-32 Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN------------------------------LHRLKPEAHDKLTNTPHEEWANCAARANVIWDQTTSNMSETTN 438
+ F +D AHL+G WNGV+LT++ D NN + A A+ ++E+ SYEY LG + + M +++ TTTC TD KG+D+A+ KL PL E R C+ H+L++ LH + P AHDKL PHE WA A R NV W Q SN +E+ N
Sbjct: 15 KAFCLDGAHLRGSWNGVILTITTTDANNNINLCAFAVVREENAKSYEYLLGKAMGSKRMKKFLNATTTTCFTDNDKGADAAMNKLAPLTEVRHCLEHILRSCRIWVKHGKTHAYEAAKSSTEPEFLACMECLHDISPTAHDKLDAIPHERWAYYAGRQNVCWLQVNSNPAESMN 188
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5KWU6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU6_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.480e-30 Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN------------------------------LHRLKPEAHDKLTNTPHEEWANCAARANVIWDQTTSNMSETTN 438
+ F +D AHL+G WNGV+LT++ D NN + A A+ ++E+ SYEY LG + + M +++ TTC TD KG+D+A+ KL PL E R C+ H+L++ L+ + P AHDKL PHE WA A R NV W Q SN +E+ N
Sbjct: 209 KAFCLDGAHLRGSWNGVILTITTTDANNSINLCAFAVVREENAKSYEYLLGKAMGSKRMKKFLNATATTCFTDNDKGADAAMNKLAPLTEVRHCLEHILRSCRIWAKHGKAHAYKAAKSSTEPEFLACMERLYDISPTAHDKLDAIPHERWAYYAGRQNVCWLQVNSNPAESMN 382
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE) HSP 1 Score: 100 bits (249), Expect = 9.460e-25 Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 19 MDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN 309
MD H KGDW+G + +SVK NN V+ VAT + KE +Y Y + N+ +N EM ++ + TTT ITD HKGS+SA+P+++ LAE +C H+LKN
Sbjct: 1 MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKN 97
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.050e-24 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 10 VFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN 309
V MD HLKG+WNG+MLTL+ KD NN ++HVAT I KED Y+ L N K+N +M + + TT TD HKG+ AL PLA+ R C+ HL+ N
Sbjct: 9 VVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILN 108
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21 Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
+V MD HLKG+WNG+MLTL+ KD NN +HVAT I KED Y+ L N K+N +M + + TT TD HKG+ AL PLA+ R C+ HL+ NL
Sbjct: 192 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNL 293
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.990e-20 Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNLHRL 321
+V D HLKG+WNG++LTL+ KD NN ++HVAT I KED Y+ L N K+N +M + + T TD HKG+ AL PLA+ R C+ H++ N+ ++
Sbjct: 169 KVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIEKI 273
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.390e-19 Identity = 51/101 (50.50%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 10 VFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
V MD HLKG+WNGVMLTL+ KD NN HVAT I KED ++ L N K N +M + + TT TD HKG+ AL PLA+ R C+ HLL NL
Sbjct: 10 VVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNL 109
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.600e-19 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
+V MD HLKG+WNG+MLTL+ KD NN +HVA I KED Y L N K+N +M + + TT TD HK + AL PLA+ R C+ HL+ N+
Sbjct: 195 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNI 296
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 3.300e-19 Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
+V MD HLKG+WNG+MLTL+ KD +N +++VAT I KED Y+ L N K N +M + + TT TD HKG+ AL + PLA+ R C+ HL+ NL
Sbjct: 234 KVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNL 334
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 2.340e-17 Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRC 288
+V MD AHLKG WNG MLTL+ KD NN +HVATAI E+ Y+ + K+N +M +++ TT TD HKG AL PLA+ R C
Sbjct: 192 KVVGMDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKCALEGEAPLAQHRNC 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74303.15119.1 >prot_H-elongata_contig74303.15119.1 ID=prot_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MGQVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYback to top mRNA from alignment at H-elongata_contig74303:1247..2428- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74303.15119.1 ID=mRNA_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-elongata_contig74303:1247..2428- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74303:1247..2428- >mRNA_H-elongata_contig74303.15119.1 ID=mRNA_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig74303:1247..2428- (Himanthalia elongata Himel1 dioecious)back to top |