mRNA_H-elongata_contig7416.15108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7416.15108.1
Unique NamemRNA_H-elongata_contig7416.15108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7416.15108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7416contigH-elongata_contig7416:5170..8753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2130
Cds size1803
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7416.15108.1prot_H-elongata_contig7416.15108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7416 5703..8508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.5713944-UTR-H-elongata_contig7416:5169..52341622931146.5713944-UTR-H-elongata_contig7416:5169..5234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 5170..5234 +
1691679717.5596335-UTR-H-elongata_contig7416:5169..52341691679717.5596335-UTR-H-elongata_contig7416:5169..5234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 5170..5234 +
1622931146.5863109-UTR-H-elongata_contig7416:5685..57021622931146.5863109-UTR-H-elongata_contig7416:5685..5702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 5686..5702 +
1691679717.5691583-UTR-H-elongata_contig7416:5685..57021691679717.5691583-UTR-H-elongata_contig7416:5685..5702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 5686..5702 +
1622931146.6389935-UTR-H-elongata_contig7416:8508..87531622931146.6389935-UTR-H-elongata_contig7416:8508..8753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 8509..8753 +
1691679717.6030767-UTR-H-elongata_contig7416:8508..87531691679717.6030767-UTR-H-elongata_contig7416:8508..8753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7416 8509..8753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.6038218-CDS-H-elongata_contig7416:5702..74901622931146.6038218-CDS-H-elongata_contig7416:5702..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7416 5703..7490 +
1691679717.5786948-CDS-H-elongata_contig7416:5702..74901691679717.5786948-CDS-H-elongata_contig7416:5702..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7416 5703..7490 +
1622931146.6198862-CDS-H-elongata_contig7416:8493..85081622931146.6198862-CDS-H-elongata_contig7416:8493..8508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7416 8494..8508 +
1691679717.5887442-CDS-H-elongata_contig7416:8493..85081691679717.5887442-CDS-H-elongata_contig7416:8493..8508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7416 8494..8508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7416.15108.1

>prot_H-elongata_contig7416.15108.1 ID=prot_H-elongata_contig7416.15108.1|Name=mRNA_H-elongata_contig7416.15108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=601bp
MQLLLQQSAADSRNDPSMENIPETVVAEGSRGQKKKNRKGSPDIRKPAQD
RAPKRRSPGLENSWPQTKNTQVLGGHGDGDVSSPSSIRGTRGPDSSSAVS
TASNGDPRSVSSQRPPVCSSPAVGARGMASAAAGSVPTSSSAEAAAAALK
TAMAAAAAETLASYTEVRQHPSTAAGSTTAEWRGAQTKSCHNSARVSTAA
GGGDMVGDSRESGVSSPAKVAAAIPAGSVAAQAAAAEVERSRLMERYKRE
EQQRLHSAGMRQQRTLAQAGEQRVLGQPQYQRDASLIQKNTSSTLAEYHQ
ALQRPPHSQSPTQSQQQHLRQQHSQHPQTSKGNPHAVQAAAKMATSGRQA
DGATTGTSLSRSRDDIHRQQPPYVSALQQQRQYQQPAVSAGQVKKSDVTY
IRIPSTQARAGGGGGTSTVTVSQRGANVLRGHGATVRDSSVASADSLGHG
TGSAVGRLEGSGVPATPLKPSSPLDVTGLAIGGGDRSSIGSSGGEGGSRE
NTHLGTGDYAPPWGKAPSAMRSQPTWSATRDYVRGGGADSGSHSTTGHSP
QDKNILGSAQPSDSQPSLAKVKVPGFETIAAGAGIHVHQLHSSGVQDRRC
*
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mRNA from alignment at H-elongata_contig7416:5170..8753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7416.15108.1 ID=mRNA_H-elongata_contig7416.15108.1|Name=mRNA_H-elongata_contig7416.15108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3584bp|location=Sequence derived from alignment at H-elongata_contig7416:5170..8753+ (Himanthalia elongata Himel1 dioecious)
GGCGACTTCTCCGTCCACGGATAACCCCGCCAAAGGAAGTGCGGTGGCGG
CAGACGTCCGCGTCTGTGAGTGGTGGTTGTAGAAGTGAGGGGGTGTATCT
TGATCCTACCGTGAGAGGAACTCGCAAGGCGATTCGGTGCCAGAGGCCAG
CACGCGTGTTTTGGGTGCGGCGTTGAGAGGCGTGTTTTTCGTTGTTGTTT
TTGGTTTTGCCCCTCCGCTGACCTCTGAGGAGTACTATAAGTAGCCAAGT
CAACTAGTCTTTTGGCTTAGTGCCGAAAGCTCCAGCGTCGTCTCCTCAGT
AAGAAGCGCCATGCGGAGGAGGACACCATGGGGTGTTTTTTATTACTAAG
TGTCTCCAGCCAGGAAGACTTCTGACTGGCAAGAAGCGCTTGTTGTATTT
GCTGTATAGCGACTTAAGTAGGACGTTAAAGTAGAGCGTTGGACACCCCC
TATCTCTGCATACCTGTTTGCCTATCCATATCCCTCTCTGTCCTCTGTAC
TTCTTCCCTTCCACAGATGAGGAGCGACAGGCGATGCAACTGCTCTTGCA
GCAGTCCGCGGCGGATTCTCGAAATGATCCTTCGATGGAGAATATTCCGG
AAACAGTCGTTGCTGAGGGCAGCCGTGGGCAAAAGAAAAAGAACAGAAAA
GGTTCGCCCGATATTCGGAAGCCGGCGCAAGACAGGGCGCCCAAGAGGCG
TTCGCCGGGGCTTGAGAATTCGTGGCCCCAGACTAAAAATACTCAGGTCC
TCGGGGGGCACGGAGATGGAGATGTTTCGTCACCGAGCTCGATTCGTGGT
ACTCGCGGTCCGGACAGCAGCTCCGCTGTCTCGACGGCGAGCAACGGGGA
TCCGCGAAGCGTTTCTTCACAGAGACCACCGGTATGTTCGTCGCCCGCCG
TGGGCGCACGAGGCATGGCTTCCGCGGCAGCTGGATCAGTGCCGACGTCT
TCCTCCGCTGAGGCGGCCGCTGCAGCATTGAAGACCGCAATGGCGGCAGC
TGCGGCGGAGACACTCGCGAGCTACACTGAGGTTCGACAACATCCATCGA
CGGCGGCGGGGAGCACCACGGCGGAATGGCGCGGTGCCCAGACGAAGTCA
TGCCACAACAGTGCCAGGGTTTCCACTGCGGCCGGTGGCGGCGACATGGT
CGGGGATTCACGTGAGAGTGGTGTTTCTTCTCCCGCGAAGGTTGCGGCTG
CGATTCCTGCTGGGTCTGTGGCGGCGCAAGCAGCAGCAGCCGAGGTCGAG
AGGAGCAGGCTGATGGAGCGGTACAAGAGGGAGGAGCAGCAGCGACTCCA
CTCCGCGGGGATGCGACAGCAGCGCACCTTGGCTCAAGCGGGAGAGCAGC
GGGTGCTGGGCCAGCCGCAGTATCAGCGAGATGCCAGTCTAATACAAAAA
AATACGTCCTCGACTCTCGCAGAATACCACCAGGCGTTGCAGCGTCCGCC
GCACTCGCAGTCGCCCACGCAGTCGCAGCAGCAGCATTTGCGGCAGCAAC
ATTCTCAACATCCTCAGACATCTAAGGGAAACCCTCACGCCGTCCAAGCC
GCAGCAAAAATGGCAACCTCAGGCAGGCAGGCTGATGGTGCGACCACGGG
AACCTCGTTATCCCGAAGCCGTGACGACATTCATCGGCAGCAGCCCCCAT
ACGTATCTGCGCTCCAACAACAGCGCCAATACCAACAACCCGCTGTATCC
GCTGGCCAGGTTAAAAAGTCCGACGTCACGTACATACGTATTCCATCCAC
GCAAGCTAGAGCGGGTGGCGGCGGCGGCACGAGCACCGTTACCGTTAGTC
AGCGTGGCGCGAACGTGCTTCGTGGTCACGGAGCCACGGTGCGTGATTCA
TCGGTCGCGAGTGCCGACTCGTTAGGGCACGGCACCGGAAGCGCGGTCGG
GCGACTTGAAGGCTCGGGCGTCCCTGCTACCCCCCTCAAGCCGTCTTCTC
CATTAGATGTAACGGGCCTCGCGATTGGTGGTGGTGATCGCTCTAGCATT
GGCAGCAGCGGCGGCGAAGGGGGTAGTCGCGAAAATACGCACCTCGGCAC
CGGCGATTACGCACCCCCTTGGGGCAAAGCTCCCTCGGCGATGCGCAGCC
AGCCGACTTGGAGCGCGACGCGGGACTACGTGCGAGGCGGCGGCGCCGAC
AGCGGAAGCCATAGCACGACAGGACACTCACCACAAGATAAGAATATCTT
GGGTAGCGCGCAGCCGTCGGACTCCCAGCCTTCTTTGGCGAAGGTGAAGG
TACCGGGGTTCGAAACGATCGCCGCCGGGGCGGGGATACACGTACACCAG
CTTCACTCATCCGGCGTGCAGGTGGGTTTCTCGAAGATTACGGTGGTGGA
GTCATCGTGACAATAGAGTGACAATAGTGGTTCCGCTAGCTCTGGCTTGC
TCTGGCTTTCTAATATTTTGACAAGGGGGGCAACAAAAAGGTGATCCATT
ATGAATGTTATTATATTTTATCGGTACGGTGTAGAGTATATGGTATTTGG
TATATGGTATATGGTATAGCTCCTGAACCGATTACTGTAATGGGTAATCA
CGTAAGCCTGTTAGTTCAGAAATTGTGAGTTTGAATCCTACCAGGGTTGA
TACTGTATATATTTACTTTTTTAGCGGTCATAGTCTATACTAATAATAGC
GCACTACATATTAGTATAAAACGAGATAACCGGAGTAAGCAAAATTCAAC
CATTGTATATTTGACGAGTTGTAGTAGTACTGACCTTGCATTGCGATAAA
TAAGGAGGCATCCGTAAACCGGGGATAGACGAGAGAATCACAGTCGGGTT
GATATCATAAGACCACAGGTAGGCGGGATTGATAACTTAGCGCATTGGAT
GACCTACCATATGTCCCATCGACAGAAATTGAGATTACGAATAAAGTTAT
AAAAAAATTAACCCGTTCGCTGCACCACCCTCTGTTGTGATTGATGTACG
CACCATCAACCCCTTTTTTGTTTTATTATCCTTGCCAGCCGTGTACAGTA
GGCGCTGTGCATTTGAGCTATACCTTCGGGCGCGCTGTCTTGAGCCTGCT
GGCATGATGGCATGATGGCATGATTGTCGACCGTGCGCGCAGCCACGATT
TCGCCTTGATCCCAATAGCTTGACATGTGTTATTCCGACATGTTTAGACA
TCCCGGCACGCGCTGTACCTAACTAAGCTGGTTCACCAATCCCAATCCCA
TCCCCAGCACGGAGACCCGGGAACGTCTAAAGTCTTGATCGTCGTCGAAT
ACCTCCCGATCCTCGATGTTTGGTTTCTCTTGGTGCCCGCCCTCGCTCGG
TTGTCGTGCGATGCCATTCGACAGGACCGACGATGCTAGTAGCGCTAGCG
CCCCTCGGCGACGTCACGATACGAAAACGAACGCAGGCGAAAACACCTTC
TACGGTGGAGGGCGGCGACGGCACACGGCCGTTGGTTTTTGTACTACGTA
TGCCCTCCACACGGGAAGGGAATGCTCGGAAAAGTTGGCCTGGTCTACCC
CAGGCGGCAACGCGTAGGACGTGCAGTACTGTGCACGCCTTTCGTCCAGC
CCAGCATTTCGTTTTGATTGATAGCTGTTTGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig7416:5170..8753+

>mRNA_H-elongata_contig7416.15108.1 ID=mRNA_H-elongata_contig7416.15108.1|Name=mRNA_H-elongata_contig7416.15108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3606bp|location=Sequence derived from alignment at H-elongata_contig7416:5170..8753+ (Himanthalia elongata Himel1 dioecious)
ATGCAACTGCTCTTGCAGCAGTCCGCGGCGGATTCTCGAAATGATCCTTC
GATGGAGAATATTCCGGAAACAGTCGTTGCTGAGGGCAGCCGTGGGCAAA
AGAAAAAGAACAGAAAAGGTTCGCCCGATATTCGGAAGCCGGCGCAAGAC
AGGGCGCCCAAGAGGCGTTCGCCGGGGCTTGAGAATTCGTGGCCCCAGAC
TAAAAATACTCAGGTCCTCGGGGGGCACGGAGATGGAGATGTTTCGTCAC
CGAGCTCGATTCGTGGTACTCGCGGTCCGGACAGCAGCTCCGCTGTCTCG
ACGGCGAGCAACGGGGATCCGCGAAGCGTTTCTTCACAGAGACCACCGGT
ATGTTCGTCGCCCGCCGTGGGCGCACGAGGCATGGCTTCCGCGGCAGCTG
GATCAGTGCCGACGTCTTCCTCCGCTGAGGCGGCCGCTGCAGCATTGAAG
ACCGCAATGGCGGCAGCTGCGGCGGAGACACTCGCGAGCTACACTGAGGT
TCGACAACATCCATCGACGGCGGCGGGGAGCACCACGGCGGAATGGCGCG
GTGCCCAGACGAAGTCATGCCACAACAGTGCCAGGGTTTCCACTGCGGCC
GGTGGCGGCGACATGGTCGGGGATTCACGTGAGAGTGGTGTTTCTTCTCC
CGCGAAGGTTGCGGCTGCGATTCCTGCTGGGTCTGTGGCGGCGCAAGCAG
CAGCAGCCGAGGTCGAGAGGAGCAGGCTGATGGAGCGGTACAAGAGGGAG
GAGCAGCAGCGACTCCACTCCGCGGGGATGCGACAGCAGCGCACCTTGGC
TCAAGCGGGAGAGCAGCGGGTGCTGGGCCAGCCGCAGTATCAGCGAGATG
CCAGTCTAATACAAAAAAATACGTCCTCGACTCTCGCAGAATACCACCAG
GCGTTGCAGCGTCCGCCGCACTCGCAGTCGCCCACGCAGTCGCAGCAGCA
GCATTTGCGGCAGCAACATTCTCAACATCCTCAGACATCTAAGGGAAACC
CTCACGCCGTCCAAGCCGCAGCAAAAATGGCAACCTCAGGCAGGCAGGCT
GATGGTGCGACCACGGGAACCTCGTTATCCCGAAGCCGTGACGACATTCA
TCGGCAGCAGCCCCCATACGTATCTGCGCTCCAACAACAGCGCCAATACC
AACAACCCGCTGTATCCGCTGGCCAGGTTAAAAAGTCCGACGTCACGTAC
ATACGTATTCCATCCACGCAAGCTAGAGCGGGTGGCGGCGGCGGCACGAG
CACCGTTACCGTTAGTCAGCGTGGCGCGAACGTGCTTCGTGGTCACGGAG
CCACGGTGCGTGATTCATCGGTCGCGAGTGCCGACTCGTTAGGGCACGGC
ACCGGAAGCGCGGTCGGGCGACTTGAAGGCTCGGGCGTCCCTGCTACCCC
CCTCAAGCCGTCTTCTCCATTAGATGTAACGGGCCTCGCGATTGGTGGTG
GTGATCGCTCTAGCATTGGCAGCAGCGGCGGCGAAGGGGGTAGTCGCGAA
AATACGCACCTCGGCACCGGCGATTACGCACCCCCTTGGGGCAAAGCTCC
CTCGGCGATGCGCAGCCAGCCGACTTGGAGCGCGACGCGGGACTACGTGC
GAGGCGGCGGCGCCGACAGCGGAAGCCATAGCACGACAGGACACTCACCA
CAAGATAAGAATATCTTGGGTAGCGCGCAGCCGTCGGACTCCCAGCCTTC
TTTGGCGAAGGTGAAGGTACCGGGGTTCGAAACGATCGCCGCCGGGGCGG
GGATACACGTACACCAGCTTCACTCATCCGGCGTGCAGATGCAACTGCTC
TTGCAGCAGTCCGCGGCGGATTCTCGAAATGATCCTTCGATGGAGAATAT
TCCGGAAACAGTCGTTGCTGAGGGCAGCCGTGGGCAAAAGAAAAAGAACA
GAAAAGGTTCGCCCGATATTCGGAAGCCGGCGCAAGACAGGGCGCCCAAG
AGGCGTTCGCCGGGGCTTGAGAATTCGTGGCCCCAGACTAAAAATACTCA
GGTCCTCGGGGGGCACGGAGATGGAGATGTTTCGTCACCGAGCTCGATTC
GTGGTACTCGCGGTCCGGACAGCAGCTCCGCTGTCTCGACGGCGAGCAAC
GGGGATCCGCGAAGCGTTTCTTCACAGAGACCACCGGTATGTTCGTCGCC
CGCCGTGGGCGCACGAGGCATGGCTTCCGCGGCAGCTGGATCAGTGCCGA
CGTCTTCCTCCGCTGAGGCGGCCGCTGCAGCATTGAAGACCGCAATGGCG
GCAGCTGCGGCGGAGACACTCGCGAGCTACACTGAGGTTCGACAACATCC
ATCGACGGCGGCGGGGAGCACCACGGCGGAATGGCGCGGTGCCCAGACGA
AGTCATGCCACAACAGTGCCAGGGTTTCCACTGCGGCCGGTGGCGGCGAC
ATGGTCGGGGATTCACGTGAGAGTGGTGTTTCTTCTCCCGCGAAGGTTGC
GGCTGCGATTCCTGCTGGGTCTGTGGCGGCGCAAGCAGCAGCAGCCGAGG
TCGAGAGGAGCAGGCTGATGGAGCGGTACAAGAGGGAGGAGCAGCAGCGA
CTCCACTCCGCGGGGATGCGACAGCAGCGCACCTTGGCTCAAGCGGGAGA
GCAGCGGGTGCTGGGCCAGCCGCAGTATCAGCGAGATGCCAGTCTAATAC
AAAAAAATACGTCCTCGACTCTCGCAGAATACCACCAGGCGTTGCAGCGT
CCGCCGCACTCGCAGTCGCCCACGCAGTCGCAGCAGCAGCATTTGCGGCA
GCAACATTCTCAACATCCTCAGACATCTAAGGGAAACCCTCACGCCGTCC
AAGCCGCAGCAAAAATGGCAACCTCAGGCAGGCAGGCTGATGGTGCGACC
ACGGGAACCTCGTTATCCCGAAGCCGTGACGACATTCATCGGCAGCAGCC
CCCATACGTATCTGCGCTCCAACAACAGCGCCAATACCAACAACCCGCTG
TATCCGCTGGCCAGGTTAAAAAGTCCGACGTCACGTACATACGTATTCCA
TCCACGCAAGCTAGAGCGGGTGGCGGCGGCGGCACGAGCACCGTTACCGT
TAGTCAGCGTGGCGCGAACGTGCTTCGTGGTCACGGAGCCACGGTGCGTG
ATTCATCGGTCGCGAGTGCCGACTCGTTAGGGCACGGCACCGGAAGCGCG
GTCGGGCGACTTGAAGGCTCGGGCGTCCCTGCTACCCCCCTCAAGCCGTC
TTCTCCATTAGATGTAACGGGCCTCGCGATTGGTGGTGGTGATCGCTCTA
GCATTGGCAGCAGCGGCGGCGAAGGGGGTAGTCGCGAAAATACGCACCTC
GGCACCGGCGATTACGCACCCCCTTGGGGCAAAGCTCCCTCGGCGATGCG
CAGCCAGCCGACTTGGAGCGCGACGCGGGACTACGTGCGAGGCGGCGGCG
CCGACAGCGGAAGCCATAGCACGACAGGACACTCACCACAAGATAAGAAT
ATCTTGGGTAGCGCGCAGCCGTCGGACTCCCAGCCTTCTTTGGCGAAGGT
GAAGGTACCGGGGTTCGAAACGATCGCCGCCGGGGCGGGGATACACGTAC
ACCAGCTTCACTCATCCGGCGTGCAGGACCGACGATGCTAGGACCGACGA
TGCTAG
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