mRNA_H-elongata_contig74145.15107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74145.15107.1
Unique NamemRNA_H-elongata_contig74145.15107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.250e-27
Identity = 60/90 (66.67%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:   34 SAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIR-------------------------RPAPPLPPPQADPLGHMNKDQLYRFRTMW 228
            SAGAVCELREDVGS+EEVILTHNAFIRKVASEAGIR                         RPAPPLPPPQADPLG+MNKDQL +FRT W
Sbjct:  465 SAGAVCELREDVGSVEEVILTHNAFIRKVASEAGIRLPAGEWAAFFGYDQPVSAELEAARSRPAPPLPPPQADPLGYMNKDQLNKFRTAW 554
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BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Match: A0A6H5L6J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 9.430e-12
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   34 SAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIR 141
            SAGAVCELREDVGS+EEVILTHNAFIRKVA+EAGIR
Sbjct:  455 SAGAVCELREDVGSVEEVILTHNAFIRKVATEAGIR 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE11_ECTSI9.250e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6J3_9PHAE9.430e-1294.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74145contigH-elongata_contig74145:767..2238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue6.9e-23
Seed eggNOG ortholog2880.D8LE11
GOsGO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
EggNOG free text desc.DNA binding
EggNOG OGsKOG1595@1,KOG1595@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.5051367-CDS-H-elongata_contig74145:766..9061622931146.5051367-CDS-H-elongata_contig74145:766..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74145 767..906 +
1691679717.5392637-CDS-H-elongata_contig74145:766..9061691679717.5392637-CDS-H-elongata_contig74145:766..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74145 767..906 +
1622931146.528039-CDS-H-elongata_contig74145:2147..22381622931146.528039-CDS-H-elongata_contig74145:2147..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74145 2148..2238 +
1691679717.5506313-CDS-H-elongata_contig74145:2147..22381691679717.5506313-CDS-H-elongata_contig74145:2147..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74145 2148..2238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74145.15107.1prot_H-elongata_contig74145.15107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74145 767..2238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74145.15107.1

>prot_H-elongata_contig74145.15107.1 ID=prot_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MVGACDDEESESAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIRRPA
PPLPPPQADPLGHMNKDQLYRFRTMW*
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mRNA from alignment at H-elongata_contig74145:767..2238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74145.15107.1 ID=mRNA_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1472bp|location=Sequence derived from alignment at H-elongata_contig74145:767..2238+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGCGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTG
CGAGCTGCGGGAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACA
ACGCGTTCATCCGGAAGGTGGCTTCCGAGGCAGGCATTCGGTGAGAGAGG
GAATCGGCGGAGGGGGGGAGGGGGGGGGGGGGCTCCTTTGTGTACGAGTA
AGAGCTGAAAAGACCACGGTATTATTTATGTATGCTTTAAATAATAATGT
TTTATTTTTTGGGAGCCAATGTTTTTTTCTTATTCCCATCTATGCATAAA
CATTTTATTTTATTTTATTTAGTCATCACGTAAGACGGACGACAGCTTTT
GCCTTACTCCAGCGGTACTAGAATAATATCGGTATAACCTCGTTATCGAG
CTGGACACACACCACATGCCATTCAAATCGATTTGATTTGGGGATATGGC
GTTATCTATTAGGGGGGGGAGGCGTACTCAAGTTTTGCAGTCCTTAGTTC
TTCGACCATTGTTCACGTCTTCGGGAGGACGGAGCATTGGTCTTCATGAT
CAGCGTGGGGGGGGGGGGGATTGCCTTCGACATAGTGCTTATCTGGTAAG
CTTGTTTGTTTTCTGCAGGCTGCCGGCGGGAGAATGGGCTGCGTTCTTTG
GATACGACCAGCCCGTAGCGGCGGAGCTAGAGGCTGCTAGAAGGTAATAT
ATACCTTTTTTGCAATACATTTTTTTTTACAGATTGTACCGTACGGTACG
GGAACCAAGTACTGTACCTTTTTTAACTCTTAAGAAAGAAACGACGATTG
ATTATAGCTCTTAATAGCACCGAGTTTTTGCTGTTCCTGCTGCTCTCACA
TTAGATATGCCGATTGGGCGGATTCGAGACCCCGCTGCTTGTTGTGGGGT
TCGTTGGACGGGGAAAAAGGAAGAAAAATACACACGACGCAAAAAATAAA
ATAAAAAGAAATGAAATGAAAGACACAAATAACAAAAATGAAATAAAAAA
TAAAGGAGGTGGACGAAGCGATCCGTGTTCTAAAAAACAGTTACAAGCAT
AAGAAGAAAAACCAACACTTTACCCGTTATATAGTCATGAAGGGAAGGGT
CAAGGAAGCGCGTCTCCAAGGTAGGTAACTACGCCACCCTACTGTCCATC
GCGATTCGGTTGATGATTCCGTTCAGATGCGAGGGTTAAAAGTGCTGCTG
CGGCGGCAACGGCGATTTTTGGCGGTTTTGATTGGCTAAGGAAGAGAGGA
CTGCCTTGGCTCGAGAAAACTCGTGGAAAATTATTACCCCGTGCGATTCG
CTTGATAGCGCGGGCGTTGTCAGTATCCCTCCCCCGCCCCCCATCGCCTG
CCCTTTCTCGTTCTTTATATCTTTCTCCCAGCCGCCCAGCGCCGCCGCTC
CCTCCACCCCAAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTA
CAGGTTCCGCACCATGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74145:767..2238+

>mRNA_H-elongata_contig74145.15107.1 ID=mRNA_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig74145:767..2238+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGCGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTG
CGAGCTGCGGGAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACA
ACGCGTTCATCCGGAAGGTGGCTTCCGAGGCAGGCATTCGATGGTGGGCG
CGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTGCGAGCTGCGG
GAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACAACGCGTTCAT
CCGGAAGGTGGCTTCCGAGGCAGGCATTCGCCGCCCAGCGCCGCCGCTCC
CTCCACCCCAAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTAC
AGGTTCCGCACCATGTGGTGACCGCCCAGCGCCGCCGCTCCCTCCACCCC
AAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTACAGGTTCCGC
ACCATGTGGTGA
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