mRNA_H-elongata_contig74145.15107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig74145.15107.1
Unique Name	mRNA_H-elongata_contig74145.15107.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.250e-27
Identity = 60/90 (66.67%), Postives = 63/90 (70.00%), Query Frame = 1

Query:   34 SAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIR-------------------------RPAPPLPPPQADPLGHMNKDQLYRFRTMW 228
            SAGAVCELREDVGS+EEVILTHNAFIRKVASEAGIR                         RPAPPLPPPQADPLG+MNKDQL +FRT W
Sbjct:  465 SAGAVCELREDVGSVEEVILTHNAFIRKVASEAGIRLPAGEWAAFFGYDQPVSAELEAARSRPAPPLPPPQADPLGYMNKDQLNKFRTAW 554

[Close]

BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Match: A0A6H5L6J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 9.430e-12
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   34 SAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIR 141
            SAGAVCELREDVGS+EEVILTHNAFIRKVA+EAGIR
Sbjct:  455 SAGAVCELREDVGSVEEVILTHNAFIRKVATEAGIR 490

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot

BLAST of mRNA_H-elongata_contig74145.15107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LE11_ECTSI	9.250e-27	66.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6J3_9PHAE	9.430e-12	94.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig74145	contig	H-elongata_contig74145:767..2238 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	112.8
Seed ortholog evalue	6.9e-23
Seed eggNOG ortholog	2880.D8LE11
GOs	GO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
EggNOG free text desc.	DNA binding
EggNOG OGs	KOG1595@1,KOG1595@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	231
Cds size	231
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931146.5051367-CDS-H-elongata_contig74145:766..906	1622931146.5051367-CDS-H-elongata_contig74145:766..906	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74145 767..906 +
1691679717.5392637-CDS-H-elongata_contig74145:766..906	1691679717.5392637-CDS-H-elongata_contig74145:766..906	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74145 767..906 +
1622931146.528039-CDS-H-elongata_contig74145:2147..2238	1622931146.528039-CDS-H-elongata_contig74145:2147..2238	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74145 2148..2238 +
1691679717.5506313-CDS-H-elongata_contig74145:2147..2238	1691679717.5506313-CDS-H-elongata_contig74145:2147..2238	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig74145 2148..2238 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig74145.15107.1	prot_H-elongata_contig74145.15107.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig74145 767..2238 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig74145:767..2238+
coding sequence from alignment at H-elongata_contig74145:767..2238+

protein sequence of mRNA_H-elongata_contig74145.15107.1

>prot_H-elongata_contig74145.15107.1 ID=prot_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MVGACDDEESESAGAVCELREDVGSLEEVILTHNAFIRKVASEAGIRRPA
PPLPPPQADPLGHMNKDQLYRFRTMW*

mRNA from alignment at H-elongata_contig74145:767..2238+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig74145.15107.1 ID=mRNA_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1472bp|location=Sequence derived from alignment at H-elongata_contig74145:767..2238+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGCGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTG
CGAGCTGCGGGAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACA
ACGCGTTCATCCGGAAGGTGGCTTCCGAGGCAGGCATTCGGTGAGAGAGG
GAATCGGCGGAGGGGGGGAGGGGGGGGGGGGGCTCCTTTGTGTACGAGTA
AGAGCTGAAAAGACCACGGTATTATTTATGTATGCTTTAAATAATAATGT
TTTATTTTTTGGGAGCCAATGTTTTTTTCTTATTCCCATCTATGCATAAA
CATTTTATTTTATTTTATTTAGTCATCACGTAAGACGGACGACAGCTTTT
GCCTTACTCCAGCGGTACTAGAATAATATCGGTATAACCTCGTTATCGAG
CTGGACACACACCACATGCCATTCAAATCGATTTGATTTGGGGATATGGC
GTTATCTATTAGGGGGGGGAGGCGTACTCAAGTTTTGCAGTCCTTAGTTC
TTCGACCATTGTTCACGTCTTCGGGAGGACGGAGCATTGGTCTTCATGAT
CAGCGTGGGGGGGGGGGGGATTGCCTTCGACATAGTGCTTATCTGGTAAG
CTTGTTTGTTTTCTGCAGGCTGCCGGCGGGAGAATGGGCTGCGTTCTTTG
GATACGACCAGCCCGTAGCGGCGGAGCTAGAGGCTGCTAGAAGGTAATAT
ATACCTTTTTTGCAATACATTTTTTTTTACAGATTGTACCGTACGGTACG
GGAACCAAGTACTGTACCTTTTTTAACTCTTAAGAAAGAAACGACGATTG
ATTATAGCTCTTAATAGCACCGAGTTTTTGCTGTTCCTGCTGCTCTCACA
TTAGATATGCCGATTGGGCGGATTCGAGACCCCGCTGCTTGTTGTGGGGT
TCGTTGGACGGGGAAAAAGGAAGAAAAATACACACGACGCAAAAAATAAA
ATAAAAAGAAATGAAATGAAAGACACAAATAACAAAAATGAAATAAAAAA
TAAAGGAGGTGGACGAAGCGATCCGTGTTCTAAAAAACAGTTACAAGCAT
AAGAAGAAAAACCAACACTTTACCCGTTATATAGTCATGAAGGGAAGGGT
CAAGGAAGCGCGTCTCCAAGGTAGGTAACTACGCCACCCTACTGTCCATC
GCGATTCGGTTGATGATTCCGTTCAGATGCGAGGGTTAAAAGTGCTGCTG
CGGCGGCAACGGCGATTTTTGGCGGTTTTGATTGGCTAAGGAAGAGAGGA
CTGCCTTGGCTCGAGAAAACTCGTGGAAAATTATTACCCCGTGCGATTCG
CTTGATAGCGCGGGCGTTGTCAGTATCCCTCCCCCGCCCCCCATCGCCTG
CCCTTTCTCGTTCTTTATATCTTTCTCCCAGCCGCCCAGCGCCGCCGCTC
CCTCCACCCCAAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTA
CAGGTTCCGCACCATGTGGTGA

Coding sequence (CDS) from alignment at H-elongata_contig74145:767..2238+

>mRNA_H-elongata_contig74145.15107.1 ID=mRNA_H-elongata_contig74145.15107.1|Name=mRNA_H-elongata_contig74145.15107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig74145:767..2238+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGCGCGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTG
CGAGCTGCGGGAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACA
ACGCGTTCATCCGGAAGGTGGCTTCCGAGGCAGGCATTCGATGGTGGGCG
CGTGCGACGATGAAGAGTCGGAGTCGGCGGGAGCCGTTTGCGAGCTGCGG
GAAGACGTGGGGTCGCTGGAGGAGGTCATTCTGACGCACAACGCGTTCAT
CCGGAAGGTGGCTTCCGAGGCAGGCATTCGCCGCCCAGCGCCGCCGCTCC
CTCCACCCCAAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTAC
AGGTTCCGCACCATGTGGTGACCGCCCAGCGCCGCCGCTCCCTCCACCCC
AAGCGGATCCACTCGGGCACATGAACAAGGATCAGCTCTACAGGTTCCGC
ACCATGTGGTGA