mRNA_H-elongata_contig7408.15100.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7408.15100.1
Unique NamemRNA_H-elongata_contig7408.15100.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7408.15100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7408contigH-elongata_contig7408:2446..5941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000495.1
Exons7
Model size1932
Cds size1932
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.7944078-CDS-H-elongata_contig7408:2445..25841622931145.7944078-CDS-H-elongata_contig7408:2445..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 2446..2584 +
1691679717.2518423-CDS-H-elongata_contig7408:2445..25841691679717.2518423-CDS-H-elongata_contig7408:2445..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 2446..2584 +
1622931145.8132904-CDS-H-elongata_contig7408:2984..31351622931145.8132904-CDS-H-elongata_contig7408:2984..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 2985..3135 +
1691679717.2697341-CDS-H-elongata_contig7408:2984..31351691679717.2697341-CDS-H-elongata_contig7408:2984..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 2985..3135 +
1622931145.8317456-CDS-H-elongata_contig7408:3394..35831622931145.8317456-CDS-H-elongata_contig7408:3394..3583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 3395..3583 +
1691679717.2783244-CDS-H-elongata_contig7408:3394..35831691679717.2783244-CDS-H-elongata_contig7408:3394..3583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 3395..3583 +
1622931145.8508186-CDS-H-elongata_contig7408:3799..40301622931145.8508186-CDS-H-elongata_contig7408:3799..4030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 3800..4030 +
1691679717.2860503-CDS-H-elongata_contig7408:3799..40301691679717.2860503-CDS-H-elongata_contig7408:3799..4030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 3800..4030 +
1622931145.8694549-CDS-H-elongata_contig7408:4395..46631622931145.8694549-CDS-H-elongata_contig7408:4395..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 4396..4663 +
1691679717.2953346-CDS-H-elongata_contig7408:4395..46631691679717.2953346-CDS-H-elongata_contig7408:4395..4663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 4396..4663 +
1622931145.8812568-CDS-H-elongata_contig7408:4945..53801622931145.8812568-CDS-H-elongata_contig7408:4945..5380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 4946..5380 +
1691679717.3053493-CDS-H-elongata_contig7408:4945..53801691679717.3053493-CDS-H-elongata_contig7408:4945..5380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 4946..5380 +
1622931145.892779-CDS-H-elongata_contig7408:5422..59411622931145.892779-CDS-H-elongata_contig7408:5422..5941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 5423..5941 +
1691679717.3146057-CDS-H-elongata_contig7408:5422..59411691679717.3146057-CDS-H-elongata_contig7408:5422..5941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 5423..5941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7408.15100.1prot_H-elongata_contig7408.15100.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7408 2446..5941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7408.15100.1

>prot_H-elongata_contig7408.15100.1 ID=prot_H-elongata_contig7408.15100.1|Name=mRNA_H-elongata_contig7408.15100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=644bp
MKVSRAMRQRPVEFVRLRAWTAAPARFRNGVSAVTSLCLVDESSAGGPPL
LIAGDEDGGVSVRRVPSDTTVGVTDAELWSMRPGGPRTQLHDSCVNSIKL
LPQQRGFVCAGDDGVVSAVATLEAASGSDIRKAATALVGHRGFVTDCDAS
SCGQAILSSSTDGTMLIWDPMAANTPVASVTIGRPVNSACFSAGDPYALV
CAPELDRDPTGKGTCGVGRGKRDDLVEIWDIRRGQTKSLRCFRDAIPAAL
ATAFAEPGAPHQSPLADIQPTPQSPQAPFPSIWAESFSSGSISARVPRAT
KPAGGPSWLAAALGSPSVPSPATPLLRRSVWADDSSDVESLPTPSTRCPL
EKENAHPDGADGDIGSSEMRWKSRCHPHSVDTSGGGQSADTSPSLEACSG
GVGDRRQRQGTQRHGRARAPVRDEPALVLDWATLPSESSDGRGCLHGGDG
TIWLPGGKTTLCTNGRRRQPRSGDASTIARQALPKCDVCSEGLASVYSVQ
VSSDGRGILTASRDAIVTLWDAQSRRAVYRFGHPQLSTRARPILWDDDSS
TKGYGGLRGEEPGGGSSSGKNRVTVLTGMRNGEVRPWRVGSRFPNRVFKP
GQRYEGFEITCLASSRDGSVFASADFGGNVRVQSATAGRVSEL*
back to top

mRNA from alignment at H-elongata_contig7408:2446..5941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7408.15100.1 ID=mRNA_H-elongata_contig7408.15100.1|Name=mRNA_H-elongata_contig7408.15100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3496bp|location=Sequence derived from alignment at H-elongata_contig7408:2446..5941+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGTCGAGGGCCATGAGGCAGAGGCCTGTGGAGTTCGTCCGACT
ACGAGCGTGGACAGCCGCTCCCGCTCGATTCAGAAACGGTGTATCTGCCG
TCACCAGTCTGTGCCTCGTGGATGAGTCCAGCGCAGGAGGTGAGTGCCTT
GTAGTCAAAAGCTGGTGTCCTAAAAATCATGTGGCGAGATCACCTTGTCG
TACCTTGGTGTGGTGTGGTAAAACGCAGCAAAATTTTGTCGCATGTCGCG
CAAGTTATGTAACGACTTGCGCAGTGTTCCTGCTGCGGTGTATATATAAT
ATATTTTTATTTGAAGAATACGCGCTGGTTTTTTGCCTAAGCCTCGCGCT
CGCATATCCCAGCCTGAAGGGAGCCTGCGGCGACTGCGGCGCTTCCCCGT
CCCATTCTCCCGACGAAGCATGTCAACATAGTTATGCGGCATATATATGC
GGGTGCCTCTGTGTCTTCTCCGTGTACATTAATCTTCATGCGCGAAAGCG
TCTCTCGTTTTGTGATCCTCCTGCATATCTTGTTTCCAGGTCCTCCGCTA
CTGATCGCCGGAGACGAAGACGGTGGCGTCTCCGTGCGACGCGTGCCCTC
GGACACCACAGTCGGGGTCACGGATGCCGAACTGTGGTCGATGAGACCCG
GGGGCCCACGGACCCAACTTCACGACTCCTGCGTCAACAGGTCGGTGCCT
TGGTTCCGCACCCGAAACAGCAAGTCGACATGGACGAAGGATAGGACAGT
ACGAAGTGAGTAAAGTACGTAGAAGTAGGGTAAATCACGCGCTGGCTGCG
GAAAAAATATAATTCGGCAACACCGCAGTTTACGCTTAAAAACACGTGTC
TTTTTATTTTCAGGTTTAGATAAGCTAACGGCATAGCTCACGGCATGTGT
TGACAATTCTTGCGCCCCTATGATCATTCCGCATCCTACGGTGTGGCAGC
ATAAAGCTCCTCCCGCAGCAGAGGGGTTTCGTGTGCGCTGGGGACGATGG
AGTCGTGAGCGCCGTGGCGACCCTCGAGGCGGCCTCGGGCAGCGACATCC
GGAAGGCTGCGACAGCTTTGGTGGGACATCGCGGCTTTGTCACGGACTGC
GATGCATCTTCGTGCGGCCAAGCCATCTTATCTAGCAGGTTTGGGAGTAG
TTGAATTCCTGGCGCGGCGGCGCCGTGATCATGAAAAACCTTCATAACCC
AACCCACTCCTCCAACCACTTCCTTCGTCAAATGTCTTACGTACTAAAAA
TAAAAATCAAGGTTTCCAGGAGGAATTCCGCGTCGCCCCCCCCTCGCAAA
ATAACTTCCAAAATACGTCAGCCTCTTGCGCACCCCTGTCCCATCCTTTT
TCAGCACCGACGGCACGATGCTCATCTGGGACCCAATGGCCGCGAACACA
CCCGTGGCGAGCGTAACCATCGGCCGTCCGGTCAACAGCGCGTGCTTCTC
CGCAGGAGATCCCTACGCCCTGGTGTGTGCACCCGAGCTTGACCGAGATC
CTACCGGGAAGGGCACATGTGGTGTCGGAAGGGGCAAAAGAGACGATCTT
GTCGAGATCTGGGATATCAGGCGAGGGCAAACGAAGTCGAACCATTTCTT
CGATTTTCGGTATAGTATCTCCCTTTGAGGATGGGGGGGGGGAGGGTGGA
ATTCTTCTCTTAAAACCTCTGCAGTGACCGCCCGCGAACCATCGCCCTCG
TATCTCTCTGCGGCATTGTCGACGCAATGCGACCTTTGATTGCTTTTTCC
TTAAATAATAATTAAATTTTACATGCATACTATAATGTATATAGGTGCAA
TAGCGTGGCAAGAGAGCTCGCCTCCGTGGCGGGTCGGTTGTAAATTCATT
TGTAGTTTGCTCGACACGATTTCCGGCTCGAGCTCGATAAAATACGTGAC
GTACCTTCTCGCGTGCTTTTTTTTTTTCTCTTACTTTTCTCGCCCCAAAG
GTCTTTACGGTGCTTTCGCGATGCCATTCCAGCGGCCCTTGCAACGGCCT
TCGCCGAACCCGGTGCCCCTCATCAGTCGCCACTCGCCGACATCCAGCCT
ACGCCACAATCTCCCCAAGCACCTTTTCCTTCTATCTGGGCCGAAAGCTT
CTCCTCAGGGTCGATATCGGCGCGCGTTCCCCGTGCGACTAAGCCCGCCG
GGGGTCCCTCTTGGTTGGCAGCCGCCTTAGGGTCACCCTCGGTGCCTTCA
CCGGCGACTCCACTTCTGGTGCGGCTGACGTCGCCTTCATTGATTATTGG
TGATAGTTGTCGCATGCTCCGTTCTTCCCCATTCAATGATCACTCTCTTG
TCACCGCGCTTTGATTACTTCCTCTCTCTTTCTCCCCACGTCGCTATCCG
TACACATCGCGTTGACGGAAACCTCTTCGAGGGGCGTCTTCTTCGTGCGG
GCGTCCATTTTCGATACGATTCGGCCGTCGAGAAGCTTGCTTTAAGACTT
TACCCGTATTCTTTTTATTTATTTATGCACTCTTGCACAAATAATCACAG
CGGAGGTCTGTCTGGGCGGACGACAGCAGCGACGTGGAATCCCTGCCCAC
TCCGAGCACCAGGTGCCCTCTCGAGAAGGAGAACGCCCATCCCGACGGAG
CTGACGGGGATATCGGAAGCAGCGAAATGCGTTGGAAAAGTCGCTGCCAC
CCACATTCGGTGGACACCAGCGGAGGAGGCCAATCCGCCGATACTTCGCC
TTCTCTCGAAGCCTGCAGTGGAGGTGTTGGCGATAGACGGCAGAGACAGG
GGACGCAACGTCACGGCAGAGCGCGAGCGCCGGTGCGAGATGAACCGGCG
TTGGTTCTTGACTGGGCGACTCTCCCAAGCGAATCCTCTGATGGCCGTGG
GTGCCTCCATGGGGGAGACGGAACGATCTGGCTACCCGGGGGTAAGACTA
CCTTGTGCACGAACGGCAGGCGGCGGCAGCCGCGTGTCGTGCCTCATCGA
CGACCCGGAATCGGTTACGGGGCGGAGTCGGGCGACGCCTCCACCATCGC
CAGACAAGCCCTACCAAAGTGCGACGTGTGCAGTGAGGGCCTTGCCAGCG
TGTACAGCGTTCAGGTGTCGTCAGACGGCAGGGGAATCCTGACGGCGTCG
AGGGACGCCATCGTGACGCTGTGGGACGCGCAGTCCAGGCGAGCCGTGTA
CCGCTTCGGCCACCCGCAGCTCTCCACGCGAGCGCGGCCAATCCTGTGGG
ACGACGACTCCAGCACGAAAGGATATGGAGGCTTAAGAGGGGAGGAGCCC
GGCGGGGGCAGCAGTAGCGGTAAGAACAGGGTAACGGTCCTTACGGGCAT
GAGGAACGGAGAGGTTAGGCCCTGGAGGGTGGGATCACGGTTCCCAAACC
GCGTGTTCAAGCCTGGACAACGGTATGAGGGTTTCGAGATCACTTGCTTG
GCGTCTAGCCGAGATGGGAGCGTGTTCGCGTCGGCTGATTTCGGTGGTAA
TGTTCGCGTGCAGTCTGCCACGGCAGGTCGGGTGTCCGAGCTATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7408:2446..5941+

>mRNA_H-elongata_contig7408.15100.1 ID=mRNA_H-elongata_contig7408.15100.1|Name=mRNA_H-elongata_contig7408.15100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3864bp|location=Sequence derived from alignment at H-elongata_contig7408:2446..5941+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGTCGAGGGCCATGAGGCAGAGGCCTGTGGAGTTCGTCCGACT
ACGAGCGTGGACAGCCGCTCCCGCTCGATTCAGAAACGGTGTATCTGCCG
TCACCAGTCTGTGCCTCGTGGATGAGTCCAGCGCAGGAGATGAAGGTGTC
GAGGGCCATGAGGCAGAGGCCTGTGGAGTTCGTCCGACTACGAGCGTGGA
CAGCCGCTCCCGCTCGATTCAGAAACGGTGTATCTGCCGTCACCAGTCTG
TGCCTCGTGGATGAGTCCAGCGCAGGAGGTCCTCCGCTACTGATCGCCGG
AGACGAAGACGGTGGCGTCTCCGTGCGACGCGTGCCCTCGGACACCACAG
TCGGGGTCACGGATGCCGAACTGTGGTCGATGAGACCCGGGGGCCCACGG
ACCCAACTTCACGACTCCTGCGTCAACAGGTCCTCCGCTACTGATCGCCG
GAGACGAAGACGGTGGCGTCTCCGTGCGACGCGTGCCCTCGGACACCACA
GTCGGGGTCACGGATGCCGAACTGTGGTCGATGAGACCCGGGGGCCCACG
GACCCAACTTCACGACTCCTGCGTCAACAGCATAAAGCTCCTCCCGCAGC
AGAGGGGTTTCGTGTGCGCTGGGGACGATGGAGTCGTGAGCGCCGTGGCG
ACCCTCGAGGCGGCCTCGGGCAGCGACATCCGGAAGGCTGCGACAGCTTT
GGTGGGACATCGCGGCTTTGTCACGGACTGCGATGCATCTTCGTGCGGCC
AAGCCATCTTATCTAGCAGCATAAAGCTCCTCCCGCAGCAGAGGGGTTTC
GTGTGCGCTGGGGACGATGGAGTCGTGAGCGCCGTGGCGACCCTCGAGGC
GGCCTCGGGCAGCGACATCCGGAAGGCTGCGACAGCTTTGGTGGGACATC
GCGGCTTTGTCACGGACTGCGATGCATCTTCGTGCGGCCAAGCCATCTTA
TCTAGCAGCACCGACGGCACGATGCTCATCTGGGACCCAATGGCCGCGAA
CACACCCGTGGCGAGCGTAACCATCGGCCGTCCGGTCAACAGCGCGTGCT
TCTCCGCAGGAGATCCCTACGCCCTGGTGTGTGCACCCGAGCTTGACCGA
GATCCTACCGGGAAGGGCACATGTGGTGTCGGAAGGGGCAAAAGAGACGA
TCTTGTCGAGATCTGGGATATCAGGCGAGGGCAAACGAACACCGACGGCA
CGATGCTCATCTGGGACCCAATGGCCGCGAACACACCCGTGGCGAGCGTA
ACCATCGGCCGTCCGGTCAACAGCGCGTGCTTCTCCGCAGGAGATCCCTA
CGCCCTGGTGTGTGCACCCGAGCTTGACCGAGATCCTACCGGGAAGGGCA
CATGTGGTGTCGGAAGGGGCAAAAGAGACGATCTTGTCGAGATCTGGGAT
ATCAGGCGAGGGCAAACGAAGTCTTTACGGTGCTTTCGCGATGCCATTCC
AGCGGCCCTTGCAACGGCCTTCGCCGAACCCGGTGCCCCTCATCAGTCGC
CACTCGCCGACATCCAGCCTACGCCACAATCTCCCCAAGCACCTTTTCCT
TCTATCTGGGCCGAAAGCTTCTCCTCAGGGTCGATATCGGCGCGCGTTCC
CCGTGCGACTAAGCCCGCCGGGGGTCCCTCTTGGTTGGCAGCCGCCTTAG
GGTCACCCTCGGTGCCTTCACCGGCGACTCCACTTCTGGTCTTTACGGTG
CTTTCGCGATGCCATTCCAGCGGCCCTTGCAACGGCCTTCGCCGAACCCG
GTGCCCCTCATCAGTCGCCACTCGCCGACATCCAGCCTACGCCACAATCT
CCCCAAGCACCTTTTCCTTCTATCTGGGCCGAAAGCTTCTCCTCAGGGTC
GATATCGGCGCGCGTTCCCCGTGCGACTAAGCCCGCCGGGGGTCCCTCTT
GGTTGGCAGCCGCCTTAGGGTCACCCTCGGTGCCTTCACCGGCGACTCCA
CTTCTGCGGAGGTCTGTCTGGGCGGACGACAGCAGCGACGTGGAATCCCT
GCCCACTCCGAGCACCAGGTGCCCTCTCGAGAAGGAGAACGCCCATCCCG
ACGGAGCTGACGGGGATATCGGAAGCAGCGAAATGCGTTGGAAAAGTCGC
TGCCACCCACATTCGGTGGACACCAGCGGAGGAGGCCAATCCGCCGATAC
TTCGCCTTCTCTCGAAGCCTGCAGTGGAGGTGTTGGCGATAGACGGCAGA
GACAGGGGACGCAACGTCACGGCAGAGCGCGAGCGCCGGTGCGAGATGAA
CCGGCGTTGGTTCTTGACTGGGCGACTCTCCCAAGCGAATCCTCTGATGG
CCGTGGGTGCCTCCATGGGGGAGACGGAACGATCTGGCTACCCGGGGGTA
AGACTACCTTGTGCACGAACGGCAGGCGGCGGCAGCCGCGTCGGAGGTCT
GTCTGGGCGGACGACAGCAGCGACGTGGAATCCCTGCCCACTCCGAGCAC
CAGGTGCCCTCTCGAGAAGGAGAACGCCCATCCCGACGGAGCTGACGGGG
ATATCGGAAGCAGCGAAATGCGTTGGAAAAGTCGCTGCCACCCACATTCG
GTGGACACCAGCGGAGGAGGCCAATCCGCCGATACTTCGCCTTCTCTCGA
AGCCTGCAGTGGAGGTGTTGGCGATAGACGGCAGAGACAGGGGACGCAAC
GTCACGGCAGAGCGCGAGCGCCGGTGCGAGATGAACCGGCGTTGGTTCTT
GACTGGGCGACTCTCCCAAGCGAATCCTCTGATGGCCGTGGGTGCCTCCA
TGGGGGAGACGGAACGATCTGGCTACCCGGGGGTAAGACTACCTTGTGCA
CGAACGGCAGGCGGCGGCAGCCGCGTTCGGGCGACGCCTCCACCATCGCC
AGACAAGCCCTACCAAAGTGCGACGTGTGCAGTGAGGGCCTTGCCAGCGT
GTACAGCGTTCAGGTGTCGTCAGACGGCAGGGGAATCCTGACGGCGTCGA
GGGACGCCATCGTGACGCTGTGGGACGCGCAGTCCAGGCGAGCCGTGTAC
CGCTTCGGCCACCCGCAGCTCTCCACGCGAGCGCGGCCAATCCTGTGGGA
CGACGACTCCAGCACGAAAGGATATGGAGGCTTAAGAGGGGAGGAGCCCG
GCGGGGGCAGCAGTAGCGGTAAGAACAGGGTAACGGTCCTTACGGGCATG
AGGAACGGAGAGGTTAGGCCCTGGAGGGTGGGATCACGGTTCCCAAACCG
CGTGTTCAAGCCTGGACAACGGTATGAGGGTTTCGAGATCACTTGCTTGG
CGTCTAGCCGAGATGGGAGCGTGTTCGCGTCGGCTGATTTCGGTGGTAAT
GTTCGCGTGCAGTCTGCCACGGCAGGTCGGGTGTCCGAGCTATAATCGGG
CGACGCCTCCACCATCGCCAGACAAGCCCTACCAAAGTGCGACGTGTGCA
GTGAGGGCCTTGCCAGCGTGTACAGCGTTCAGGTGTCGTCAGACGGCAGG
GGAATCCTGACGGCGTCGAGGGACGCCATCGTGACGCTGTGGGACGCGCA
GTCCAGGCGAGCCGTGTACCGCTTCGGCCACCCGCAGCTCTCCACGCGAG
CGCGGCCAATCCTGTGGGACGACGACTCCAGCACGAAAGGATATGGAGGC
TTAAGAGGGGAGGAGCCCGGCGGGGGCAGCAGTAGCGGTAAGAACAGGGT
AACGGTCCTTACGGGCATGAGGAACGGAGAGGTTAGGCCCTGGAGGGTGG
GATCACGGTTCCCAAACCGCGTGTTCAAGCCTGGACAACGGTATGAGGGT
TTCGAGATCACTTGCTTGGCGTCTAGCCGAGATGGGAGCGTGTTCGCGTC
GGCTGATTTCGGTGGTAATGTTCGCGTGCAGTCTGCCACGGCAGGTCGGG
TGTCCGAGCTATAA
back to top