mRNA_H-elongata_contig74064.15097.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74064.15097.1
Unique NamemRNA_H-elongata_contig74064.15097.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig74064.15097.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.980e-6
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  106 KADLIASVNMEQAFERQKERAAAGDDVPYVLARTLRSNIQYNAA 237
            +A +IA V+++   +RQK R + GD+VPYVLART+RSN+QY AA
Sbjct:  103 QAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAA 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74064.15097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNQ5_ECTSI1.980e-656.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74064contigH-elongata_contig74064:2334..3008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionM41 family endopeptidase FtsH/HflB
Ec32 orthologEc-17_004370.1
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.2722507-CDS-H-elongata_contig74064:2333..24711622931145.2722507-CDS-H-elongata_contig74064:2333..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74064 2334..2471 +
1691679717.1279516-CDS-H-elongata_contig74064:2333..24711691679717.1279516-CDS-H-elongata_contig74064:2333..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74064 2334..2471 +
1622931145.2882407-CDS-H-elongata_contig74064:2889..30061622931145.2882407-CDS-H-elongata_contig74064:2889..3006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74064 2890..3006 +
1691679717.1391582-CDS-H-elongata_contig74064:2889..30061691679717.1391582-CDS-H-elongata_contig74064:2889..3006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74064 2890..3006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74064.15097.1prot_H-elongata_contig74064.15097.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74064 2334..3006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74064.15097.1

>prot_H-elongata_contig74064.15097.1 ID=prot_H-elongata_contig74064.15097.1|Name=mRNA_H-elongata_contig74064.15097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
SEGKRLSSLSRADTRPPCLVGTRSIPICTPPAVALKADLIASVNMEQAFE
RQKERAAAGDDVPYVLARTLRSNIQYNAAIALKAK
back to top

mRNA from alignment at H-elongata_contig74064:2334..3008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74064.15097.1 ID=mRNA_H-elongata_contig74064.15097.1|Name=mRNA_H-elongata_contig74064.15097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig74064:2334..3008+ (Himanthalia elongata Himel1 dioecious)
TCCGAGGGCAAGAGACTGAGCTCGCTGAGCCGTGCAGACACGCGGCCCCC
CTGCCTCGTTGGGACCAGAAGCATCCCAATCTGCACACCACCTGCGGTAG
CCCTGAAGGCGGATCTAATAGCGAGCGTAAATATGGAGGTGAGATGCATC
TTGGTTTGTGAGGTGGATGCAAGTACTTTTATTTTGTAATATGTCACTGC
TGTATCCGCTCTTGTACATACTTTGTACTTTATTTGTTTATAATGGTAGT
ACAGCAGTAGTAGTGCCCTCCCTGAGACGCCCCTCATGACGAAAAGGTGG
GGTGTTTTATTCTCCGTCGCCGCACTACGGACAACTATCTCGCTCTCAAC
TTTTCAGTCAAAGTGTATTCGCTCAAATATGGGTCCCTGGTTGATACCGC
TATAATACCATATGTTGCTGCTTTATAATAGTTGGTATGTATAGACGATG
TGTTGTATCACGCAGGAGGTGTCTTGGCCCCGTCTATTGCTTGGTGTGGC
GACCTTTGATATTTGTACCCTTCCTGCCCCTGCCGATGCGTTCCATTATT
TTCCAGCAAGCGTTCGAACGGCAAAAGGAGCGCGCAGCTGCCGGCGATGA
CGTGCCATATGTCCTAGCTCGCACCCTGAGGAGCAATATTCAGTACAACG
CTGCGATAGCCCTGAAGGCGAAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74064:2334..3008+

>mRNA_H-elongata_contig74064.15097.1 ID=mRNA_H-elongata_contig74064.15097.1|Name=mRNA_H-elongata_contig74064.15097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig74064:2334..3008+ (Himanthalia elongata Himel1 dioecious)
TCCGAGGGCAAGAGACTGAGCTCGCTGAGCCGTGCAGACACGCGGCCCCC
CTGCCTCGTTGGGACCAGAAGCATCCCAATCTGCACACCACCTGCGGTAG
CCCTGAAGGCGGATCTAATAGCGAGCGTAAATATGGAGTCCGAGGGCAAG
AGACTGAGCTCGCTGAGCCGTGCAGACACGCGGCCCCCCTGCCTCGTTGG
GACCAGAAGCATCCCAATCTGCACACCACCTGCGGTAGCCCTGAAGGCGG
ATCTAATAGCGAGCGTAAATATGGAGCAAGCGTTCGAACGGCAAAAGGAG
CGCGCAGCTGCCGGCGATGACGTGCCATATGTCCTAGCTCGCACCCTGAG
GAGCAATATTCAGTACAACGCTGCGATAGCCCTGAAGGCGAAGCAAGCGT
TCGAACGGCAAAAGGAGCGCGCAGCTGCCGGCGATGACGTGCCATATGTC
CTAGCTCGCACCCTGAGGAGCAATATTCAGTACAACGCTGCGATAGCCCT
GAAGGCGAAG
back to top