mRNA_H-elongata_contig7395.15088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7395.15088.1
Unique NamemRNA_H-elongata_contig7395.15088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: D7G131_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G131_ECTSI)

HSP 1 Score: 522 bits (1344), Expect = 1.130e-174
Identity = 261/365 (71.51%), Postives = 295/365 (80.82%), Query Frame = 3
Query:  324 VTEGAVAKP-GPPKWVPRWAVDMHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVPLLPRISER----------------------TVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPPDTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            VTEG   +  GPP W PRWAV MHP  Q   S+GLYF HML+LSKSG+ FP+QLIPNNHGL  SVGLDTAAGFAVLG A W+R+RSG+PL P +  R                       VPWKL   R+KKKLP+TF VLI AY LSGLG+  C+YLLY LS  G+ MSVAMHRS+QVL+SHLVWV MGVRI  +A++ FF + EKGSWV MKW+SNWLWWVVGGYFVSSSLFN+ADLANQF+CPLPPDTESVVVKIINPENND+AAMA+GSIAPC++APWWEEVLYRGFLLPALT+YLPLKAA+P+G+ LFA HHMNLQAMLPL+ LG VWSLLY+YSGNLLVTVL+HAMWNSRVF GSLLGL
Sbjct:  184 VTEGERKQTAGPPAWAPRWAVHMHPAGQATLSIGLYFFHMLHLSKSGLTFPIQLIPNNHGLFHSVGLDTAAGFAVLGVAAWSRLRSGLPLFPPLGGRGVEGKGKGGXXXXXXXXXRERVKVPWKLEGARVKKKLPLTFTVLIFAYFLSGLGSTVCEYLLYGLSYLGVGMSVAMHRSLQVLLSHLVWVYMGVRILSMAVRSFF-DTEKGSWVGMKWRSNWLWWVVGGYFVSSSLFNMADLANQFLCPLPPDTESVVVKIINPENNDIAAMAVGSIAPCMTAPWWEEVLYRGFLLPALTLYLPLKAALPAGSFLFAAHHMNLQAMLPLSVLGLVWSLLYLYSGNLLVTVLIHAMWNSRVFLGSLLGL 547          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A835YJD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJD5_9STRA)

HSP 1 Score: 372 bits (956), Expect = 9.950e-120
Identity = 192/331 (58.01%), Postives = 241/331 (72.81%), Query Frame = 3
Query:  387 MHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAG----FAVLGAAGWARVRSGVPLLPR------ISERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPPDTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            M P  Q   ++ LY  HM  LSK  + FPVQLIPN++GLCQSVGLDT AG    F V+  A   R   G            +  R+ PW L+++ L  KLP+  ++L  AY  SG  A   +Y+LY L+ +GL ++VAMHRS+QVL+ HLVWV+ G  I G  +KPFF  +E   W+ +KW+++WLWWVVGGY+ SS LF +ADL NQFVCPLPPDTESVV KIINPE+ND+AA+A+GSIAPCLSAPWWEEVLYRGF+LPALT+YLP   A+P  AVLFA HH+++QAM+PL+ LG VW+LLYV SGNLLVT+++H MWNSRVF GSLLG+
Sbjct:    1 MKPWAQFVVALVLYLFHMFVLSKHCIPFPVQLIPNDYGLCQSVGLDTLAGEHLRFGVIVGALLLRREEGKTGKALGGGAAVMRGRSAPWSLDRS-LTAKLPLLAMLLGFAYYCSGWSALAWEYVLYGLAAAGLPLTVAMHRSLQVLLGHLVWVLAGSAILGNVLKPFFRTKES-KWLRIKWRTHWLWWVVGGYYASSFLFTMADLLNQFVCPLPPDTESVVAKIINPEDNDLAALAVGSIAPCLSAPWWEEVLYRGFMLPALTLYLPRSMAVPVSAVLFAAHHLSIQAMIPLSMLGLVWALLYVLSGNLLVTIMIHGMWNSRVFLGSLLGV 329          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A6H5JAJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ2_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 5.420e-105
Identity = 189/326 (57.98%), Postives = 217/326 (66.56%), Query Frame = 3
Query:  324 VTEGAVAKP-GPPKWVPRWAVDMHPLIQLGTSVGLYFVHM-------------------------LYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVPLLPRISERTV----------------------PWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGS-----------WVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPPDTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRG 1124
            VTEG   +  GPP W PRWAVDMHP  Q   S+GLYF HM                         L+LSKSG+ FP+QLIPNNHGL  SVGLDTAAGFAVLG A W+RVRSG+PL P +  R V                      PWKL   R+KKKLP+TF VLI AY LSGLG+  C+YLLY LS  G+ MSVAMHRS+QVL+SHLVWV MGVRI  +A++ FF + EK S            +    +   + WVVGGYFVSSSLFN+ADLANQF+CPLPPDTESVVVKIINPENND+AAMA+GSIAPC++APWWEEVLYRG
Sbjct:  223 VTEGKRKQAAGPPAWAPRWAVDMHPAGQAAVSIGLYFFHMARRRCVRATRVYRLGALGELPSGKRLHLSKSGLTFPIQLIPNNHGLFHSVGLDTAAGFAVLGVAAWSRVRSGLPLFPPLGGRGVEGKEKGRGKAGAKSGTRGRVKIPWKLEGARVKKKLPLTFTVLIFAYFLSGLGSTVCEYLLYGLSYLGVGMSVAMHRSLQVLLSHLVWVYMGVRILSMAVRSFF-DTEKASVAAAICMIPSELMRTCRRFTSVLWVVGGYFVSSSLFNMADLANQFLCPLPPDTESVVVKIINPENNDIAAMAVGSIAPCMTAPWWEEVLYRG 547          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A7S1XHH8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XHH8_9RHOD)

HSP 1 Score: 332 bits (852), Expect = 1.130e-103
Identity = 170/338 (50.30%), Postives = 229/338 (67.75%), Query Frame = 3
Query:  357 PKWVPRWAVD----MHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAV-LGAAGWARV-RSGVPLLPRISERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP-DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            P+W P W  D    MHP++QL   +GLY +H+L++SK     P QLIPN+ GL   VGLD+  G+ V L   GW ++ + G P    +     PWK+ + +LK+ L  T  +LIV+YL SG GA FC+ +L  LS+ G+ +++   R+ +VL+ HL+WV MG+RI    + PFF    KG+W+  KW +NWLWW +GGY VS+ LFN AD+ NQF+ P      ESVV K++NPEN D+ AM +GSI PC+SAP +EEVLYRGFLLPALT + PL  AIP  +VLFA+HH+NL  +LPL+ LG  W+++Y  S NL+VT+L+HAMWNSRVF  SLLGL
Sbjct:   36 PQWAPAWMPDQLIRMHPILQLAVLLGLYAIHLLFISKKTFPLPRQLIPNDKGLLNEVGLDSIVGYIVILVVVGWRKIMKLGRPFPNLLQSENPPWKVPR-QLKRTLAPTTGILIVSYLASGYGAVFCEQVLCLLSVYGVPLTIPTLRAWKVLLGHLMWVYMGIRILNRRLSPFF--PPKGTWLRWKWNANWLWWSIGGYAVSALLFNCADVVNQFILPSSVFSEESVVNKLVNPENRDLFAMGIGSIGPCMSAPIFEEVLYRGFLLPALTAFFPLSLAIPVSSVLFAIHHLNLSGVLPLSVLGLAWAIIYTQSRNLVVTILIHAMWNSRVFLVSLLGL 370          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: W7TRA3_9STRA (Caax amino terminal protease family domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRA3_9STRA)

HSP 1 Score: 325 bits (833), Expect = 4.120e-99
Identity = 175/359 (48.75%), Postives = 233/359 (64.90%), Query Frame = 3
Query:  297 GLEDASISDVTEGAVAKPGPPKWVPRWAVDMHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVPLLPRI-SERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLT-MSVAMHRSIQVLVSHLVWVVMGVRITGLAM-----KPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP-DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            G E  S S++        G P W P W V +HPLIQ+   V LYF HML LSK  + FP QL+PN HGL QS+G+D+ AG  VLGAA + R   G+PL P +   R +P+   K    K   I F+ L+VAYL SG  +++ +       + GL+ ++VA+ R++QVL  HLVWV++GV I          KPFF   +K  W+   W + WLWW +GGY+VSS  F+VAD  NQ V P    + +SVV ++INPE NDV AM +GS+APC+SAPWWEEVLYRGFLLPAL ++ P   A    AV+FA HHM++  M+PLT LG++W++LY+ SGNLLV + +H++WNSRVF GSLLG+
Sbjct:  151 GEESWSASELPSYRERPRGAPAWTPTWIVTLHPLIQMLVMVALYFFHMLVLSKVAMPFPFQLVPNTHGLFQSIGMDSLAGLLVLGAAAYFRRARGLPLKPVVFGARPLPFNPPKRGRGKVWRILFL-LMVAYLTSGSASKWVE------DVFGLSELNVALGRAVQVLAGHLVWVLLGVGILKTQAGEGGDKPFF--GKKSVWMKSSWNTYWLWWAIGGYYVSSLAFHVADTVNQVVLPASAFEVDSVVTQMINPEGNDVVAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPADVATLVSAVIFAAHHMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI 500          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: M2X807_GALSU (CAAX amino terminal protease family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X807_GALSU)

HSP 1 Score: 319 bits (817), Expect = 1.840e-97
Identity = 167/333 (50.15%), Postives = 231/333 (69.37%), Query Frame = 3
Query:  357 PKWVPRWAVDMHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVPLLPRISE-RTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP-DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            P+ +P W    +P IQL   +GLY VH+L+LSK G +   +L P + G   +VGLDT +G  V+  A   R  +GV L+P + E    PWK+  T    KL  T ++L +AYL SG  A FC+ LL  LS  G+ ++VA  R+ +VL+ HL+WV M V+I G  ++PFF    KGSW+  +W+SNWLWWV+GGY+ S  LFN+AD  NQ++ P    + ESVV K++ PENND+ AMA+G+I PC++AP +EEVLYRG+LLPAL   +P++ AIP  +VLFA+HH+N+ +++PLT LG+ W+LLY +S NLLVT+L+HA+WNSRVF GSLLGL
Sbjct:  117 PEKLPSWLRLKNPWIQLVVMLGLYVVHLLFLSKKGWDISKKLAPPDRGRFDAVGLDTISGLLVMIVAFVLRRMAGVNLIPNLIEVPKPPWKVP-TATYDKLGATTLLLFLAYLASGYAAVFCEQLLLLLSFYGVPLTVASLRAWKVLLGHLIWVYMAVKILGNRLEPFF--PPKGSWIKWRWRSNWLWWVIGGYYGSGLLFNIADSFNQWILPSSLFNDESVVSKLVKPENNDLFAMAIGAIGPCITAPVFEEVLYRGYLLPALATIMPIRFAIPLSSVLFAVHHLNIGSVIPLTVLGWAWALLYAHSRNLLVTILIHALWNSRVFLGSLLGL 446          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A0G4G260_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G260_VITBC)

HSP 1 Score: 315 bits (807), Expect = 1.920e-97
Identity = 178/348 (51.15%), Postives = 222/348 (63.79%), Query Frame = 3
Query:  438 MLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVR----------------------------------SGV-----PLLPRISERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPPDT-----ESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            ML LS+S + FPVQLIPN +GL QS+GLD+ AG   L AA   RV                                   SG      PLLP       PWK+   + + K  I   +LI+AY  SG GA   ++ LY LS  G+ +S+AMHRS+QVL+ HL+WV  G  I G+ ++PFF  R  GSW  ++W+ +WLWWVVGGY+VSS LFN AD+ NQ V  LPP       ESVV K+INPENND+ A+A+GSIAPC+SAPWWEEVLYRGF LPAL+V++P   A+P  AVLFA+HHM++Q+M+PL  LG  W +LY+ S NLLVTVL+HAMWNSRVF GS LGL
Sbjct:    1 MLVLSRSCIAFPVQLIPNKYGLFQSIGLDSCAGLVALAAAYIGRVSMLTNRAAALRGHRDDKALPPVDGNRPNATTAVVTSGEDGQPDPLLPL---SPYPWKIP-VKSRPKALIVLALLILAYFSSGYGAVVFEWSLYGLSALGVPISIAMHRSLQVLLGHLLWVGTGCLILGIGLRPFFPPR--GSWYRLQWRRSWLWWVVGGYYVSSLLFNGADVINQLV--LPPSVFQEGGESVVTKMINPENNDILALAVGSIAPCVSAPWWEEVLYRGFTLPALSVFMPPWVALPVSAVLFAVHHMSIQSMIPLATLGLAWGILYMLSNNLLVTVLIHAMWNSRVFLGSFLGL 340          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A7S0E9C4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E9C4_9CRYP)

HSP 1 Score: 318 bits (816), Expect = 3.010e-97
Identity = 161/338 (47.63%), Postives = 230/338 (68.05%), Query Frame = 3
Query:  357 PKWVPRWAV-----DMHPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVPLLPRISERT-VPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP-DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            P+W+P +        +HPL+Q    +  Y  H+LYLSK+  NFP QLIPN+ G  QS+GLD+ AG  V+      R  +GV ++P + + +  PW++ +   KK L  T   L++AY+ SG GA FC+ +L  LS+  + +++   R+ +VL+ HL+WV MG+RI G   KPFF    +G+W+  +  SNW+WWVVG Y+VS+ LFN+ADL NQF+ P    D ESVV K++NPEN D+ AMA+G++ PC+SAP +EEVLYRGFLLPAL   +PL+ AIP+ ++LFA+HH+N+  +LPL+ LG  W+++Y  S NLLVT+L+HA+WNSRVF GS   L
Sbjct:  111 PEWLPSFVPLGLTRKLHPLVQFAIMLACYAFHLLYLSKNSWNFPEQLIPNSKGAFQSIGLDSIAGLVVVAGVLVCRKLAGVSVIPPLLQSSNPPWRIPREA-KKMLGGTTAYLLLAYIASGYGAVFCEQVLLLLSVYNVPLTIPTMRAWKVLLGHLMWVYMGIRILGTKHKPFF--PPQGTWLRWRTNSNWVWWVVGSYYVSALLFNIADLVNQFILPSTIFDEESVVSKLVNPENKDLLAMAIGAVGPCISAPIFEEVLYRGFLLPALAAMMPLQWAIPTSSILFAVHHLNIGGILPLSVLGLAWAIIYTQSRNLLVTILIHALWNSRVFLGSFNSL 445          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A2V3IW85_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW85_9FLOR)

HSP 1 Score: 317 bits (813), Expect = 9.400e-97
Identity = 175/366 (47.81%), Postives = 239/366 (65.30%), Query Frame = 3
Query:  291 AGGLEDASISDVTEGAVAKPGPPKWVPRWAVDM------HPLIQLGTSVGLYFVHMLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAV-LGAAGWARV----RSGVPLLPRI-SERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP-DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            A  L+  S   + + + +KP  P+W P W  D        P +QL   + LY  H+ +LS  G  F   LIPN+  L QS+G ++ AG  V +    W R         P+LP + +    PWK+ +   K+++  T ++L+VAYLLSG GA F + +LY L+ SG+ ++VA  R+ +VL+ HL+WV MG+ I    +KPFF    KG+W+  KW+SNWLWW +GGY+VS+  FNVAD+ NQ + P    + E+VV K+INPEN D  AMA+GSI PC+SAP +EEVLYRGFLLPAL  +LP+ AAIP+ +VLFA+HH+N   +LPL+ LGF+W++LY  S NL VTVL+HAMWNSRVF GSLLGL
Sbjct:   87 ASSLQSQSSLSIDDPSESKPSRPQWAPEWLPDFFLDIRRRPWLQLAILLPLYAFHLFFLSTKGFKFKKPLIPNSKNLFQSIGYESIAGAIVAVVMLLWRRYILPQGQSQPVLPNVLTVNNPPWKVPRDA-KRRIGQTTILLVVAYLLSGYGAVFSEQVLYVLAGSGVPLTVATTRAWKVLLGHLMWVYMGIAILR-RLKPFF--PPKGTWLRWKWRSNWLWWAIGGYYVSAMFFNVADVLNQLLLPASLFEEETVVSKLINPENKDRVAMAIGSIGPCVSAPVFEEVLYRGFLLPALACFLPMWAAIPASSVLFAIHHLNPTMILPLSMLGFIWAILYSKSRNLTVTVLIHAMWNSRVFLGSLLGL 448          
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Match: A0A7S2B7Y7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7Y7_9STRA)

HSP 1 Score: 297 bits (760), Expect = 1.370e-91
Identity = 145/247 (58.70%), Postives = 186/247 (75.30%), Query Frame = 3
Query:  615 VPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYWLSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWVDMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPP--DTESVVVKIINPENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAVLFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGSLLGL 1349
            +PWKL+  +LK K+   F +L V Y  SG  A   +Y+LY L+  G+ MSVAMHRS+QVL+ HLVW+  GV+I G  ++PFF   ++G W+ MKW++ WLWWVVGGY+VSS  FN ADL NQF+ P      +E+VV K+INPENND+AAMA+GSIAPC +APWWEEVLYRGFLLP+L +++PL  A+P  AV+FA HHM   +M+PLT LG VW++LY+ S NL VTVL+H MWNSRVF GSLLG+
Sbjct:   21 LPWKLDAAQLKFKVIWLFALLCVTYQASGYVALLWEYVLYGLAALGVPMSVAMHRSMQVLLGHLVWLFAGVKILGSVLRPFF--SDEGGWLSMKWRTRWLWWVVGGYYVSSWAFNCADLLNQFILPEVAFEASETVVAKMINPENNDLAAMAIGSIAPCFTAPWWEEVLYRGFLLPSLAIHMPLWLAVPLSAVMFAAHHMQSCSMVPLTALGLVWAVLYIRSRNLFVTVLIHGMWNSRVFLGSLLGI 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7395.15088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G131_ECTSI1.130e-17471.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJD5_9STRA9.950e-12058.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JAJ2_9PHAE5.420e-10557.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XHH8_9RHOD1.130e-10350.30Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
W7TRA3_9STRA4.120e-9948.75Caax amino terminal protease family domain-contain... [more]
M2X807_GALSU1.840e-9750.15CAAX amino terminal protease family protein n=1 Ta... [more]
A0A0G4G260_VITBC1.920e-9751.15Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0E9C4_9CRYP3.010e-9747.63Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A2V3IW85_9FLOR9.400e-9747.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2B7Y7_9STRA1.370e-9158.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7395contigH-elongata_contig7395:2953..9093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score524.2
Seed ortholog evalue4.6e-146
Seed eggNOG ortholog2880.D7G131
KEGG koko:K07052
EggNOG free text desc.CAAX protease self-immunity
EggNOG OGs2QR9S@2759,COG1266@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCAAX amino terminal protease
Ec32 orthologEc-27_001320.1
Exons8
Model size2347
Cds size1065
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7395.15088.1prot_H-elongata_contig7395.15088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7395 3240..8098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.71837-UTR-H-elongata_contig7395:2952..32391622931143.71837-UTR-H-elongata_contig7395:2952..3239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7395 2953..3239 +
1691679716.4339545-UTR-H-elongata_contig7395:2952..32391691679716.4339545-UTR-H-elongata_contig7395:2952..3239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7395 2953..3239 +
1622931143.909246-UTR-H-elongata_contig7395:8098..90931622931143.909246-UTR-H-elongata_contig7395:8098..9093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7395 8099..9093 +
1691679716.5193818-UTR-H-elongata_contig7395:8098..90931691679716.5193818-UTR-H-elongata_contig7395:8098..9093Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7395 8099..9093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.7408068-CDS-H-elongata_contig7395:3239..33921622931143.7408068-CDS-H-elongata_contig7395:3239..3392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 3240..3392 +
1691679716.4449575-CDS-H-elongata_contig7395:3239..33921691679716.4449575-CDS-H-elongata_contig7395:3239..3392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 3240..3392 +
1622931143.7618523-CDS-H-elongata_contig7395:3646..38591622931143.7618523-CDS-H-elongata_contig7395:3646..3859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 3647..3859 +
1691679716.454269-CDS-H-elongata_contig7395:3646..38591691679716.454269-CDS-H-elongata_contig7395:3646..3859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 3647..3859 +
1622931143.781477-CDS-H-elongata_contig7395:5103..52281622931143.781477-CDS-H-elongata_contig7395:5103..5228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 5104..5228 +
1691679716.4634242-CDS-H-elongata_contig7395:5103..52281691679716.4634242-CDS-H-elongata_contig7395:5103..5228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 5104..5228 +
1622931143.799926-CDS-H-elongata_contig7395:5630..57271622931143.799926-CDS-H-elongata_contig7395:5630..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 5631..5727 +
1691679716.4726694-CDS-H-elongata_contig7395:5630..57271691679716.4726694-CDS-H-elongata_contig7395:5630..5727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 5631..5727 +
1622931143.8176656-CDS-H-elongata_contig7395:6546..65871622931143.8176656-CDS-H-elongata_contig7395:6546..6587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 6547..6587 +
1691679716.4822037-CDS-H-elongata_contig7395:6546..65871691679716.4822037-CDS-H-elongata_contig7395:6546..6587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 6547..6587 +
1622931143.835363-CDS-H-elongata_contig7395:7048..72551622931143.835363-CDS-H-elongata_contig7395:7048..7255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7049..7255 +
1691679716.4929209-CDS-H-elongata_contig7395:7048..72551691679716.4929209-CDS-H-elongata_contig7395:7048..7255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7049..7255 +
1622931143.8593745-CDS-H-elongata_contig7395:7588..76821622931143.8593745-CDS-H-elongata_contig7395:7588..7682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7589..7682 +
1691679716.5040276-CDS-H-elongata_contig7395:7588..76821691679716.5040276-CDS-H-elongata_contig7395:7588..7682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7589..7682 +
1622931143.8855386-CDS-H-elongata_contig7395:7963..80981622931143.8855386-CDS-H-elongata_contig7395:7963..8098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7964..8098 +
1691679716.5117881-CDS-H-elongata_contig7395:7963..80981691679716.5117881-CDS-H-elongata_contig7395:7963..8098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7395 7964..8098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7395.15088.1

>prot_H-elongata_contig7395.15088.1 ID=prot_H-elongata_contig7395.15088.1|Name=mRNA_H-elongata_contig7395.15088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=355bp
MAGGLEDASISDVTEGAVAKPGPPKWVPRWAVDMHPLIQLGTSVGLYFVH
MLYLSKSGVNFPVQLIPNNHGLCQSVGLDTAAGFAVLGAAGWARVRSGVP
LLPRISERTVPWKLNKTRLKKKLPITFVVLIVAYLLSGLGAQFCDYLLYW
LSISGLTMSVAMHRSIQVLVSHLVWVVMGVRITGLAMKPFFFNREKGSWV
DMKWKSNWLWWVVGGYFVSSSLFNVADLANQFVCPLPPDTESVVVKIINP
ENNDVAAMAMGSIAPCLSAPWWEEVLYRGFLLPALTVYLPLKAAIPSGAV
LFALHHMNLQAMLPLTCLGFVWSLLYVYSGNLLVTVLVHAMWNSRVFFGS
LLGL*
back to top

mRNA from alignment at H-elongata_contig7395:2953..9093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7395.15088.1 ID=mRNA_H-elongata_contig7395.15088.1|Name=mRNA_H-elongata_contig7395.15088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6141bp|location=Sequence derived from alignment at H-elongata_contig7395:2953..9093+ (Himanthalia elongata Himel1 dioecious)
GCCATACACAGCACCAATGGAGTCACCGCCGCTACCGCTGTCGCAGCCCT GTGTACGCGCTCGTAGGATGCGCCCCGCGGAGAACTGTCCATCCTTGGAA CATTCCCAAGCATTTCCCGGCTGCAAGATTGTCCGCCGCCGACGCTCCCG AGGAAGGAGACTCCGATTTCGATGGGTCCAGGGGCGATCGATCGACTGCG GGTCATAGAAAAGAAGATACGGTTTTATCAGGAGCGGACGCGCCGAGGGA AACCTCTGTCGGGCCTGAGACAGGCGTATCTGTGGCGATGGCTGGGGGGC TAGAGGATGCATCGATCTCTGACGTAACGGAAGGAGCTGTAGCGAAGCCG GGCCCTCCGAAATGGGTCCCGCGATGGGCGGTTGACATGCACCCGTTAAT TCAGTTGGGCACAAGCGTGGGTCTATACTTCGTTCACATGGTGAGTAGAT TAGCGGGGTGGTTGTGGAGTTATTATTCTGTACCAGAAGATGGGTTTGAT CCCGGTGGAGTGAATGGTTTGCCAAAGGCGTCGCTTGAGGTTCGGTTTGG AAGGCCGCTGCCAGTTAGATATGAAAAAACGCGTCTGTTGCGCACAACCA GCCTCAGCAACCAGCTCCCCTGCCCGCTAAACGTTCAGCCTCCAAGCGAG TGAGTGCCTCGTGTCCCCGTTTTTATCCATCCCTCCTCCTTCAGCTGTAC CTATCCAAGTCCGGCGTCAACTTCCCCGTTCAGCTCATTCCCAACAACCA CGGACTGTGCCAATCGGTGGGCCTCGACACGGCGGCGGGTTTTGCGGTGC TTGGGGCGGCGGGGTGGGCGCGCGTGCGATCCGGAGTTCCGCTGCTACCC CGCATCAGCGAAAGGACTGTGCCGTGGAAGCTCAACAAGACACGGTTAAA AAAGAAGGCAAGGATGAAGTGCTTTCGTGGGGAGGGGAGGGAGGGGAGGG TTGAACCGAGTGGAAAGAGCGATTTTGCGGTACACACGGCCTGTTATCCA AGGAAAGTTTTTTTTCAAGTGTCTTAACCCCCCCCCCCCTCCAAAAAAAG GAAACCCCAAGGATGCGTTCCAGCACTCAATTCAATTACTAGGACTTGCC GGCCGCATTTTAAGAAATAGCGTCGAAATACGCCTGCAGTGAAAGTAAAG TCTGTATTCGCCACTCCGCGCCCTCTGGTGTTAATCGAACTTGGTCGCTT TCCGTCACTCCTCGTCTAACGATAAGAGGCCGCGAACGGCAAGATAGCGC TTTGGCTATTGCGTGCCCCCTCAAAGCCTTTAGTGCTTGTTGGAATCAGC AAGGCTCTGCTTGCTACTGCGCTCGTTGCTCTCTGATAGACGAATTATCA CCGCCTGTCGCTAGCTTCCAAAGCCTAGCGTTGCTTGGTGTCGTACATGA GCATCGCTACCCACCCTCCCTGTGCTCTTTACGCGAGCCATCGATCACAG TTACTGGTGAATCATACTCTGGACGCCCTTGAAACCCTTCGGACCCCTGG TGTGTCTGAGGCATGAGCCCCCCCTTTTTTCGCAGCACAGCGAGGGCGTG TGTGTCGTTAAAAACGCCTTTGTTTACGTTTGCGAAACCAAGGTGCTACG CGCAGGTGGGAAACCCTTTTTCTTGTTCTGTTTTGCTGACAAAATGACTC TTGTTAAAAGAGGGCCTCATTGCCAGTAGACTCGGACGGAATGTCGGGTG GCATCAACAAGCCTGGTGTAATATTTCGTACTGAAATTGGCGAACTCTGA AGATGAAAAGTTTTCCTAAATAGCGGCTGGCATCGTACACGTCATCACCT TCCTAAGCGCGCGTGTGATACTTTTGAAAGTTGTAACAACGCTCACCATG ATCATGCAAACGAGAAAGACTCAAGTCATTGCGATCTCTGACCCAGGCCA TGGGCTCAGGCACACCGTTGGGAATGGCGGTGTGAAATGCTAGCTTTCCA GGCTGTATACATTGTCTTTTGTGTCGTCCGCGTGTGGAACAATCTGTAGC ACCAGAAATGCCACAAGCGCGACAATCTCCGCTAGAACCGTGTTCAAAAT GAACATGCCATGTTAAGACTTGCCCACCCCCCCCTCTCCCCTCCCCTCTC TCCTTAACAAACACGCCATTTCGCTTCGGCACGTTCTGCCTCGCTACCCA GCTCCCCATCACGTTCGTAGTGCTGATCGTCGCCTATCTCCTCTCCGGGC TTGGGGCACAATTCTGCGACTACCTCCTGTACTGGTTGAGCATCTCGGGC TTGACGATGAGCGTGGCGATGCACAGGCGAGCGCCACTGCTGCGGAAGGA ACGCATAGCCAAGCGGTGGTAGTGTGAATCTCTCCCGTCGCACGACATGT GACTCTTACGGCGTGCTGTATGATTGACTATCTCGGCGTGTCGGGTTAGA AAGTAAACACCGAGGATTATTTTGGTTGGGGTAATAATCACCCCCTCACC CCCTTGGCGTTTTGCGAGGAAACCCAGTAATAGTAATAGTAATAAGATAT GAATGACTGTAAATGCAGCGAAGGCGCGGCGCGGCCACTGACGGACTAAG AGCCCTCTGGGCGGTGATTTAGTAAACTTTATATCTCTTAAGAGTCGCTG GCCCTCGCGATGAAGGCGATAACCTGGCGTTCCCGCCGTTCAGTTCCGCC AACCCTCCGCGGTGCCATGCCTCGGCAGATCAATTCAGGTGCTGGTGAGC CACCTCGTGTGGGTTGTGATGGGCGTTCGTATCACCGGCCTCGCCATGAA GCCGTTCTTCTTCAATAGAGAAAAGGTGTAGTAAGCATCGCAAAGTAGCT CTTGTTAAGTCGCGTCTCTCATAATTCTAGTGGGCGGTAGCGTCTAGTAG AGATAGGTCCCATTTCGATGCACACACACATGTGTGTAGAGTGTCCCTAA TGCATCCTCTCCATACCCGTTGTAGTATGTTTAGAAACCCTTGACCCCGC GGATTGGTCTTTGTCGTTTGATGTTTCAAGGAGCTAAGATGATCGGAGAC TGTCCCCGCAGTTTACGGAGCAAGGGTACGTACCTATCCAGGTTCGATGT CCTGAATGGGGGTTCCTTCGAGTTTCACATTCTTATTTTTAAATATATGA ACTCATTGAATCCCCCAAACATCCAAGCCTTCTTAGCACCGTAGGGGTGC AGTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACATTACTACCTT TGAGTAAAAAATCGTCACATCGTGTTCCCCAGTAGTAGATTCATCGGGTG GACTGTTTAATTCGGGGATCTCGTCATTATCCCGGGGACTATGACACCAA GCCAGACCTTAGAGGGTGAACTGTGGTTGTTAGGAAAAGTTAAGCATGTT CAGTTCATGATTCTATTGTACATATATCTCGATTGATTTCGGATAAAACT TAATTTCCTCTGTTTCGTCCTTGAGATTCGGTCATTCTCGCCAATATTAT CCTCCTCCCGACAGATATCTAACGATAAATGCGCCTGCCGACATTTTGCC GTTCGCCTCCATGATTGCCTCGCCGACACCACGTGTTATGTGTTTACTGC GCCCTTTGTTGGGGGGGGGGGATGACCCGGCGCCGGTTCTCTAGGGATCG TGGGTCGACATGAAGTGGAAGTCGAATTGGTTGTGGTGAGAAGTTGTGGT TGGTTGGATCCAGAAGCTCTTATCTGTGACGTATGTAGGGGCGACACCAA CCCTCCTGCCGGCGATTTGATCGAGTCGTCCCCCCCCGGGATTGTGTGAG ATCTCGCAGGATACCTGCACCGTGCGCTCGTGGAGATTGTAGATCCACCC CGAGAAGAAACCTTAAGAGGCGGAATAAGACGTGCGGTGCGGCAAAGCCT AGACGTATTTCGAGTTGGGCTTCGAAACGCCCACGGGCGTGGAGGAGAGG GATATTGGCTTTGGTGCCTTTTGCCTTTTCCCTGTCTTGGGTGTTATCAC TCAAAATATTAAATCGTTTTTTTTTCCGGAGCTTCCCGCACCCCTATTGC ACGCCTTTAAATCCCTGCGTGATGGCGTATAAGATGCAATACGACGCGAT ACGATACGATGTAATTCGAAGCGATGGCGATCTCGCGAATGAAAAGGTGG GTGGTCGGGGGCTACTTCGTCTCGTCCTCGCTGTTCAACGTGGCCGACCT GGCGAATCAATTCGTGTGCCCCCTGCCGCCGGACACGGAGTCCGTCGTGG TGAAGATCATCAACCCAGAGAACAACGACGTTGCCGCCATGGCCATGGGT TCCATCGCACCCTGTCTATCGGCCCCCTGGTGGGAAGAAGTGCTCTATCG CGGGTGAGCGAAAAACGATTCGAGCCTATAGCTAAAGCTGACTGGAGGAG GTCTGTATAAATTGGTTGCTTGCGCGGCAGGGATCGAACAGGACAGCGAG TAAGAAATTATTCTCGGACGGAGTGGAGGGAGTTCCGGAGAGGTAGTTTA GCATTATATGACGCGATCAGTTTCGGCGTGTATTTTGTTTGAAAGCTTGC GCGTCGCAGTCGCCGTCATCAAAACTTCCTTACATGTCGCTTTTGCAACC AAGCCCCGGCAGATTGTCTACATGCGCGTTCACGGATCCTTGGACTCGCC TGTTTTTCTATTCCCTTGCGGACCGTATCGATGCAGGTTTCTGTTGCCTG CTCTGACGGTGTACCTTCCCCTGAAGGCAGCCATTCCCTCGGGAGCCGTG CTGTTCGCCCTGCATCACATGAATTTGCAGGTAAATGCAAAATATTAGTA ACCACGAGAAAGGAAATATTATCTTGAATTACGTAATATCACCGCTCGTG GCGTTCTCTTAGTATCGCAAGGCACGCGAGCCTAACCGTGACTGGCAGTC GTTTATACGAGCCGGCGTCACCGATCGTGAGAGGTAGCGGCCGTCGGAAC CCGACCTTCATCTGCTAAGGAGCACGTATCCCAGCTCCCCGAAGCCGCCA CTTCGATCAAAATCCGACACTCCCACCTCTTTTTACGCCCGTGCTGGTTT CTTCCGCGCAGGCCATGCTTCCCCTGACCTGTCTGGGGTTTGTTTGGTCC CTTCTCTACGTGTACTCCGGTAACCTCTTGGTGACGGTCTTGGTGCACGC CATGTGGAACAGCAGGGTTTTCTTTGGCTCCTTGTTAGGCTTGTAGCCAG TGAATTGAGATGTCTAAAGTTCAAGTTCGGAAGACTCTAGCACCCTACCC GCGTACCTAGCGGATGACTTCCACTCTGATCCACAATAAGTGGCCGATAC GAATATTCACTGGTAGACGGCTCAGTTGGCTTCATCCTTCCAAAATTATG CCTGTGCATAGCTTGAGGGGAACATAAAAAAAATACTTGTGGAAGGCAGG GGAGGATTTTATACAATCCCCGGGTTTTTACCCCTCGGGGCCAAAAGTCC CAAGGGCAGCTTCATCATGACGAATATTGACTCGTAGACGGCTCAAGAGG AGGTGCGATGCTGAGCTCTCACGAAAGACTCAGTTTTGACAGTCCCGCGG GGGTTTCCACAATGCGATATAAACTTCTTTTCGAAAAAACAAACTGGTAT CGGACCGAAGGATCGCGCGAGCGAGGTCAGATCACGGGCACTCATCGTGG ACCAAGAGAAGGTGTGATGCTGAGCTACCACGAAAGACTCGATTTTGACA GTCCCGCGGGGGGTTCGAAAACGCGATAAAAAAAACGTATTGAAAAAAAA GAGCAGCAATAGATATAACCATATTTCTTCCAAATCGGCCACTTATTATG AATCAGAGGTAATCCAAAAAGGGGCGCTGAGAGAGTTTTTGTTGTTGTTT CCAGATAGATTTAACATATAATTTTCCAGAAAAACAGCGGTTTATTTGGA GATGGCTTCTACCTGCAACGAACGTTCGAATGGCGACGAAACACGCAATG TTCACGATTCAGTGCTGGTATAATACGAAGTAGTACGGGTACTGCTGTGG CCTACTTGATCATTGCTGATGCTGGTTCAAATTCGGAGCGTTCTCGATGG AGGACTTAAAGGAAGGAGCTTATGAGGTTTTGTCGATAGCCTTCCTTTGT CTTTATTTCGGGGAAAAACGCCAGCCTGCGGTGAGAGGTAACTATTAATA GCGGGGAGCACCAGATGAGCATAAGGTATTCAAGAGTGGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7395:2953..9093+

>mRNA_H-elongata_contig7395.15088.1 ID=mRNA_H-elongata_contig7395.15088.1|Name=mRNA_H-elongata_contig7395.15088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at H-elongata_contig7395:2953..9093+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGGGGGCTAGAGGATGCATCGATCTCTGACGTAACGGAAGGAGC
TGTAGCGAAGCCGGGCCCTCCGAAATGGGTCCCGCGATGGGCGGTTGACA
TGCACCCGTTAATTCAGTTGGGCACAAGCGTGGGTCTATACTTCGTTCAC
ATGATGGCTGGGGGGCTAGAGGATGCATCGATCTCTGACGTAACGGAAGG
AGCTGTAGCGAAGCCGGGCCCTCCGAAATGGGTCCCGCGATGGGCGGTTG
ACATGCACCCGTTAATTCAGTTGGGCACAAGCGTGGGTCTATACTTCGTT
CACATGCTGTACCTATCCAAGTCCGGCGTCAACTTCCCCGTTCAGCTCAT
TCCCAACAACCACGGACTGTGCCAATCGGTGGGCCTCGACACGGCGGCGG
GTTTTGCGGTGCTTGGGGCGGCGGGGTGGGCGCGCGTGCGATCCGGAGTT
CCGCTGCTACCCCGCATCAGCGAAAGGACTGTGCCGTGGAAGCTCAACAA
GACACGGTTAAAAAAGAAGCTGTACCTATCCAAGTCCGGCGTCAACTTCC
CCGTTCAGCTCATTCCCAACAACCACGGACTGTGCCAATCGGTGGGCCTC
GACACGGCGGCGGGTTTTGCGGTGCTTGGGGCGGCGGGGTGGGCGCGCGT
GCGATCCGGAGTTCCGCTGCTACCCCGCATCAGCGAAAGGACTGTGCCGT
GGAAGCTCAACAAGACACGGTTAAAAAAGAAGCTCCCCATCACGTTCGTA
GTGCTGATCGTCGCCTATCTCCTCTCCGGGCTTGGGGCACAATTCTGCGA
CTACCTCCTGTACTGGTTGAGCATCTCGGGCTTGACGATGAGCGTGGCGA
TGCACAGCTCCCCATCACGTTCGTAGTGCTGATCGTCGCCTATCTCCTCT
CCGGGCTTGGGGCACAATTCTGCGACTACCTCCTGTACTGGTTGAGCATC
TCGGGCTTGACGATGAGCGTGGCGATGCACAGATCAATTCAGGTGCTGGT
GAGCCACCTCGTGTGGGTTGTGATGGGCGTTCGTATCACCGGCCTCGCCA
TGAAGCCGTTCTTCTTCAATAGAGAAAAGATCAATTCAGGTGCTGGTGAG
CCACCTCGTGTGGGTTGTGATGGGCGTTCGTATCACCGGCCTCGCCATGA
AGCCGTTCTTCTTCAATAGAGAAAAGGGATCGTGGGTCGACATGAAGTGG
AAGTCGAATTGGTTGTGGGATCGTGGGTCGACATGAAGTGGAAGTCGAAT
TGGTTGTGGTGGGTGGTCGGGGGCTACTTCGTCTCGTCCTCGCTGTTCAA
CGTGGCCGACCTGGCGAATCAATTCGTGTGCCCCCTGCCGCCGGACACGG
AGTCCGTCGTGGTGAAGATCATCAACCCAGAGAACAACGACGTTGCCGCC
ATGGCCATGGGTTCCATCGCACCCTGTCTATCGGCCCCCTGGTGGGAAGA
AGTGCTCTATCGCGGGTGGGTGGTCGGGGGCTACTTCGTCTCGTCCTCGC
TGTTCAACGTGGCCGACCTGGCGAATCAATTCGTGTGCCCCCTGCCGCCG
GACACGGAGTCCGTCGTGGTGAAGATCATCAACCCAGAGAACAACGACGT
TGCCGCCATGGCCATGGGTTCCATCGCACCCTGTCTATCGGCCCCCTGGT
GGGAAGAAGTGCTCTATCGCGGGTTTCTGTTGCCTGCTCTGACGGTGTAC
CTTCCCCTGAAGGCAGCCATTCCCTCGGGAGCCGTGCTGTTCGCCCTGCA
TCACATGAATTTGCAGGTTTCTGTTGCCTGCTCTGACGGTGTACCTTCCC
CTGAAGGCAGCCATTCCCTCGGGAGCCGTGCTGTTCGCCCTGCATCACAT
GAATTTGCAGGCCATGCTTCCCCTGACCTGTCTGGGGTTTGTTTGGTCCC
TTCTCTACGTGTACTCCGGTAACCTCTTGGTGACGGTCTTGGTGCACGCC
ATGTGGAACAGCAGGGTTTTCTTTGGCTCCTTGTTAGGCTTGTAGGCCAT
GCTTCCCCTGACCTGTCTGGGGTTTGTTTGGTCCCTTCTCTACGTGTACT
CCGGTAACCTCTTGGTGACGGTCTTGGTGCACGCCATGTGGAACAGCAGG
GTTTTCTTTGGCTCCTTGTTAGGCTTGTAG
back to top