mRNA_H-elongata_contig73946.15086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73946.15086.1
Unique NamemRNA_H-elongata_contig73946.15086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.960e-15
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V+NM E+GWRPREVLGTLVDVY+ LS C  FAEAVA DERSYKR
Sbjct:  650 KVENMAEIGWRPREVLGTLVDVYLSLSACPPFAEAVAGDERSYKR 694
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: UPI0018CEFE8A (ubiquitin conjugation factor E4 B n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CEFE8A)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N ++ GW PR +LG + D+Y+ L  C+RFAE++AADERS+++
Sbjct: 1025 KVRNPIKYGWEPRRLLGQIFDIYIHLH-CDRFAESLAADERSFQK 1068
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: A0A1I8QB10_STOCA (U-box domain-containing protein n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8QB10_STOCA)

HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N ++ GW PR +LG + D+Y+ L  C+RFA+A+AADERS+++
Sbjct: 1067 KVRNPIKYGWEPRRLLGQIFDIYLHLD-CDRFAQALAADERSFQK 1110
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: UPI000C20B81E (ubiquitin conjugation factor E4 B n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20B81E)

HSP 1 Score: 53.1 bits (126), Expect = 6.980e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG +VD+Y+ L  CE+FAEA+A DERS++R
Sbjct:  969 KVRNPEKYGWEPRWLLGHIVDIYLHLD-CEKFAEALAGDERSFRR 1012
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: UPI0017829E06 (ubiquitin conjugation factor E4 B-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI0017829E06)

HSP 1 Score: 52.4 bits (124), Expect = 8.010e-7
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG + D+Y+ L  C+RFA+A+AADERS+++
Sbjct:   29 KVRNPAKYGWEPRRLLGEIFDIYLHLD-CDRFAQALAADERSFQK 72
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: UPI0001CBAF13 (ubiquitin conjugation factor E4 B n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBAF13)

HSP 1 Score: 52.8 bits (125), Expect = 9.550e-7
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V+N  + G+ P+++L  L D+Y+  S C +FAEAVAADERSY++
Sbjct:  979 RVENKEKYGFEPKKLLDQLTDIYLHFSDCPKFAEAVAADERSYRK 1023
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: A0A1B0G1K1_GLOMM (U-box domain-containing protein n=7 Tax=Glossina TaxID=7393 RepID=A0A1B0G1K1_GLOMM)

HSP 1 Score: 52.8 bits (125), Expect = 9.550e-7
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG + D+Y++L  C+RFA+A+AADERS+++
Sbjct: 1055 KVRNPAKYGWDPRRLLGQIFDIYLRLD-CDRFAQALAADERSFQK 1098
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: A0A1I8ML10_MUSDO (U-box domain-containing protein n=3 Tax=Musca domestica TaxID=7370 RepID=A0A1I8ML10_MUSDO)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG + D+Y+ L  C+RFA+A+AADERS+++
Sbjct: 1073 KVRNPTKYGWEPRRLLGQIFDIYLHLD-CDRFAQALAADERSFQK 1116
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: A0A0L0CN62_LUCCU (U-box domain-containing protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0CN62_LUCCU)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG + D+Y+ L  C+RFA+A+AADERS+++
Sbjct: 1085 KVRNPAKYGWEPRRLLGQIFDIYLHLD-CDRFAQALAADERSFQK 1128
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BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Match: W8C0E4_CERCA (Ubiquitin conjugation factor E4 B n=4 Tax=Ceratitis capitata TaxID=7213 RepID=W8C0E4_CERCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVDNMVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR 135
            +V N  + GW PR +LG + D+Y+ L  C+RFA+A+AADERS+++
Sbjct: 1099 KVRNPTKYGWEPRRMLGEIFDLYIHLD-CDRFAQALAADERSFQK 1142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73946.15086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI1.960e-1577.78Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
UPI0018CEFE8A3.730e-748.89ubiquitin conjugation factor E4 B n=1 Tax=Teleopsi... [more]
A0A1I8QB10_STOCA5.100e-748.89U-box domain-containing protein n=1 Tax=Stomoxys c... [more]
UPI000C20B81E6.980e-753.33ubiquitin conjugation factor E4 B n=1 Tax=Onthopha... [more]
UPI0017829E068.010e-748.89ubiquitin conjugation factor E4 B-like n=1 Tax=Rha... [more]
UPI0001CBAF139.550e-748.89ubiquitin conjugation factor E4 B n=1 Tax=Saccoglo... [more]
A0A1B0G1K1_GLOMM9.550e-748.89U-box domain-containing protein n=7 Tax=Glossina T... [more]
A0A1I8ML10_MUSDO1.310e-648.89U-box domain-containing protein n=3 Tax=Musca dome... [more]
A0A0L0CN62_LUCCU1.310e-648.89U-box domain-containing protein n=3 Tax=Lucilia Ta... [more]
W8C0E4_CERCA1.310e-648.89Ubiquitin conjugation factor E4 B n=4 Tax=Ceratiti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73946contigH-elongata_contig73946:626..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog2880.D7FHG5
Preferred nameUBE4A
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030433,GO:0032446,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.4879653-UTR-H-elongata_contig73946:625..6371622931143.4879653-UTR-H-elongata_contig73946:625..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73946 626..637 +
1691679716.3553987-UTR-H-elongata_contig73946:625..6371691679716.3553987-UTR-H-elongata_contig73946:625..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73946 626..637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.5253356-CDS-H-elongata_contig73946:637..7631622931143.5253356-CDS-H-elongata_contig73946:637..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73946 638..763 +
1691679716.3658872-CDS-H-elongata_contig73946:637..7631691679716.3658872-CDS-H-elongata_contig73946:637..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73946 638..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73946.15086.1prot_H-elongata_contig73946.15086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73946 638..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73946.15086.1

>prot_H-elongata_contig73946.15086.1 ID=prot_H-elongata_contig73946.15086.1|Name=mRNA_H-elongata_contig73946.15086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVELGWRPREVLGTLVDVYVKLSVCERFAEAVAADERSYKR*
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mRNA from alignment at H-elongata_contig73946:626..763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73946.15086.1 ID=mRNA_H-elongata_contig73946.15086.1|Name=mRNA_H-elongata_contig73946.15086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig73946:626..763+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGATAACATGGTGGAGCTGGGTTGGCGCCCGAGGGAAGTGCTAGG
CACCCTCGTGGATGTGTACGTCAAGCTCTCCGTGTGCGAGCGCTTTGCCG
AGGCGGTCGCCGCCGACGAGAGGTCCTACAAGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73946:626..763+

>mRNA_H-elongata_contig73946.15086.1 ID=mRNA_H-elongata_contig73946.15086.1|Name=mRNA_H-elongata_contig73946.15086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig73946:626..763+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGAGCTGGGTTGGCGCCCGAGGGAAGTGCTAGGCACCCTCGTGGA
TGTGTACGTCAAGCTCTCCGTGTGCGAGCGCTTTGCCGAGGCGGTCGCCG
CCGACGAGAGGTCCTACAAGAGGTGAATGGTGGAGCTGGGTTGGCGCCCG
AGGGAAGTGCTAGGCACCCTCGTGGATGTGTACGTCAAGCTCTCCGTGTG
CGAGCGCTTTGCCGAGGCGGTCGCCGCCGACGAGAGGTCCTACAAGAGGT
GA
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