mRNA_H-elongata_contig73940.15084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73940.15084.1
Unique NamemRNA_H-elongata_contig73940.15084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A6H5L5V8_9PHAE (MsrB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.060e-54
Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            +V AGCRTPLYE SHKF+CGCGWPGFWTNI+DAV+EE+D+DG R EI+CS CGGHLGHVFRGEGFGNPEPNERHCVN +S+AF+PE
Sbjct:  119 YVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPE 204          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A836C9K1_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.160e-50
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVP 282
            +V   C TPLY+SSHKF+CGCGWPGFWTNIKDAV+EERD DG R EI+CSSCGGHLGHVFRGEGF NP PNERHCVN +SI F+P
Sbjct:  118 YVCGCCGTPLYDSSHKFDCGCGWPGFWTNIKDAVYEERDKDGFRAEILCSSCGGHLGHVFRGEGFSNPPPNERHCVNSVSIGFIP 202          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A7S2V6B3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.630e-48
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            ++ AGC TPLY S HKF+CGCGWPGFWTNIK AV+E+ D DG R EIMCS+CG HLGHVFRGEGF NP PNERHCVN +SIAF+PE
Sbjct:  125 YICAGCSTPLYTSEHKFDCGCGWPGFWTNIKGAVYEKLDKDGFRCEIMCSACGSHLGHVFRGEGFNNPPPNERHCVNSVSIAFLPE 210          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: W7U3G1_9STRA (Peptide methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.810e-47
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            +V  GC+TPLY S+ KF+CGCGWPGFWTNIKDAV+E+RD+DG R EI+CS C GHLGHVFR EGFGNP P+ERHCVN +S+ FVPE
Sbjct:  151 YVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPE 236          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: W6KXY4_9TRYP (MsrB domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KXY4_9TRYP)

HSP 1 Score: 144 bits (363), Expect = 2.480e-42
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            +V AGC TPLY S+ KF CGCGWPGFW  +  AV EE D+DGMR EI+C++C GHLGHVFRGEGF NP PNERHCVN  SI F+P+
Sbjct:   64 YVCAGCGTPLYASAMKFACGCGWPGFWDCLPKAVREEPDADGMRTEILCNACNGHLGHVFRGEGFKNPPPNERHCVNSSSIMFIPK 149          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A813KAL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL)

HSP 1 Score: 139 bits (350), Expect = 1.080e-39
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 NGSYTPVPFVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVP 282
             G Y     + AG   PLY S  KF+CGCGWPGFWTN+KDAV+E+RD+DG R E++CS C GH+GHVFRGE FG+P  +ERHCVN LS+ F+P
Sbjct:   96 EGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDGHMGHVFRGEAFGHPT-DERHCVNSLSLVFLP 187          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: W6L550_9TRYP (MsrB domain-containing protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L550_9TRYP)

HSP 1 Score: 137 bits (346), Expect = 2.670e-39
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   28 FVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            +V AGC TPLY S+ KF CGCGWPGFW  +  AV EE D+DG R EI+C++C GHLGHVFR EGF NP PNERHCVN  SI F+P+
Sbjct:   99 YVCAGCDTPLYTSTMKFACGCGWPGFWDCLPKAVREEPDADGRRTEIICNACNGHLGHVFRHEGFKNPLPNERHCVNNSSIKFIPK 184          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A7S1MB94_NEODS (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MB94_NEODS)

HSP 1 Score: 135 bits (340), Expect = 4.400e-39
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   13 YTPVPFVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE 285
            Y    +  AGC T LY S  KF+CGCGWPGFWTN+  AV EE D+DG R EI+C++C GHLGHVFRGEGF NP  NERHCVNG S+ FVP+
Sbjct:   40 YAAGNYHCAGCDTLLYTSEMKFDCGCGWPGFWTNVDKAVREEPDADGHRVEILCNACNGHLGHVFRGEGFPNPL-NERHCVNGTSLKFVPK 129          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A0M9G8X6_9TRYP (MsrB domain-containing protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G8X6_9TRYP)

HSP 1 Score: 136 bits (343), Expect = 8.790e-39
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   13 YTPVPFVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVP 282
            Y    +V A C+TPLY S+ KF CGCGWPGFW +I+ AV E+ D DG R EI+C++C  HLGH+FR EGF NP PNERHCVN  SI F+P
Sbjct:   98 YDEGEYVCAACKTPLYTSAMKFACGCGWPGFWDSIQKAVREQPDKDGRRVEIVCNACNSHLGHIFRHEGFSNPPPNERHCVNSTSILFIP 187          
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Match: A0A812INW2_SYMPI (MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INW2_SYMPI)

HSP 1 Score: 134 bits (337), Expect = 4.910e-38
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 NGSYTPVPFVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSDGMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVP 282
            +G Y       AG + PLY SS KF+CGCGWPGFWTN++ AV+E+RD+DG R EI+CS C GH+GHVFRGEGFG    +ERHCVN LS+ F+P
Sbjct:   71 SGIYICAGCFAAGQQVPLYTSSMKFDCGCGWPGFWTNVQGAVYEQRDADGRRCEILCSKCEGHMGHVFRGEGFGYCT-DERHCVNSLSLVFLP 162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73940.15084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5V8_9PHAE4.060e-5481.40MsrB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C9K1_9STRA3.160e-5078.82Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2V6B3_9STRA2.630e-4875.58Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
W7U3G1_9STRA2.810e-4773.26Peptide methionine sulfoxide reductase b5 n=2 Tax=... [more]
W6KXY4_9TRYP2.480e-4268.60MsrB domain-containing protein n=1 Tax=Phytomonas ... [more]
A0A813KAL6_POLGL1.080e-3961.29Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
W6L550_9TRYP2.670e-3966.28MsrB domain-containing protein n=1 Tax=Phytomonas ... [more]
A0A7S1MB94_NEODS4.400e-3964.84Peptide-methionine (R)-S-oxide reductase n=1 Tax=N... [more]
A0A0M9G8X6_9TRYP8.790e-3961.11MsrB domain-containing protein n=1 Tax=Leptomonas ... [more]
A0A812INW2_SYMPI4.910e-3861.29MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73940contigH-elongata_contig73940:1457..2142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D7G3N8
KEGG koko:K07305
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-00_006660.1
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.3508956-CDS-H-elongata_contig73940:1456..15531622931143.3508956-CDS-H-elongata_contig73940:1456..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73940 1457..1553 -
1691679716.3213055-CDS-H-elongata_contig73940:1456..15531691679716.3213055-CDS-H-elongata_contig73940:1456..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73940 1457..1553 -
1622931143.4022584-CDS-H-elongata_contig73940:1954..21421622931143.4022584-CDS-H-elongata_contig73940:1954..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73940 1955..2142 -
1691679716.3332818-CDS-H-elongata_contig73940:1954..21421691679716.3332818-CDS-H-elongata_contig73940:1954..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73940 1955..2142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73940.15084.1prot_H-elongata_contig73940.15084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73940 1457..2142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73940.15084.1

>prot_H-elongata_contig73940.15084.1 ID=prot_H-elongata_contig73940.15084.1|Name=mRNA_H-elongata_contig73940.15084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
LNGSYTPVPFVLAGCRTPLYESSHKFECGCGWPGFWTNIKDAVFEERDSD
GMRNEIMCSSCGGHLGHVFRGEGFGNPEPNERHCVNGLSIAFVPE
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mRNA from alignment at H-elongata_contig73940:1457..2142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73940.15084.1 ID=mRNA_H-elongata_contig73940.15084.1|Name=mRNA_H-elongata_contig73940.15084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=686bp|location=Sequence derived from alignment at H-elongata_contig73940:1457..2142- (Himanthalia elongata Himel1 dioecious)
CTTAACGGATCTTACACGCCCGTTCCTTTTGTGTTAGCAGGATGCCGGAC GCCTCTGTACGAGAGTAGTCACAAGTTTGAATGCGGGTGCGGCTGGCCCG GGTTCTGGACCAACATCAAGGACGCGGTTTTCGAAGAGAGGGACTCGGAC GGCATGCGCAACGAGATCATGTGTTCCAGCTGCGGGGGGTGAGTCTATCG CCGTAACAGCCACATAACGAGGATACGGCACGCCGGCAAAAATATATGTC CCGAAAACTTGGTATTATCTTGATATGAAGGGATGGAATCCCCCCCTCTC GCCTAGAATGCGTGTGTCCCTCTTTTCCTAGAATGTATTTTTATTTTTTA AAAACTTGAACTGTTTTGGGTGCGCCCATTCAGGAGCTGCACCCCAGCCC CCGTTATCACCCATTTAAGACTTCCACATGCTTCAAAGCGCACCACTCGG CGTAGGAACCACGTACCCATCCACTGAGGTGTTTATTTTTTATTTTGTGC ACCTCATTTTGATCAATACATGTTCAGGACAGCTTTTCTCGCTCGCCGGT GCCCGTTTTTCTCGGGGCGGGGGTATTATCCTTTTACAGTCACCTAGGAC ACGTGTTCCGTGGAGAAGGCTTCGGTAATCCCGAGCCCAACGAGCGCCAC TGTGTGAATGGATTGTCGATCGCCTTTGTCCCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig73940:1457..2142-

>mRNA_H-elongata_contig73940.15084.1 ID=mRNA_H-elongata_contig73940.15084.1|Name=mRNA_H-elongata_contig73940.15084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig73940:1457..2142- (Himanthalia elongata Himel1 dioecious)
CTTAACGGATCTTACACGCCCGTTCCTTTTGTGTTAGCAGGATGCCGGAC
GCCTCTGTACGAGAGTAGTCACAAGTTTGAATGCGGGTGCGGCTGGCCCG
GGTTCTGGACCAACATCAAGGACGCGGTTTTCGAAGAGAGGGACTCGGAC
GGCATGCGCAACGAGATCATGTGTTCCAGCTGCGGGGGCTTAACGGATCT
TACACGCCCGTTCCTTTTGTGTTAGCAGGATGCCGGACGCCTCTGTACGA
GAGTAGTCACAAGTTTGAATGCGGGTGCGGCTGGCCCGGGTTCTGGACCA
ACATCAAGGACGCGGTTTTCGAAGAGAGGGACTCGGACGGCATGCGCAAC
GAGATCATGTGTTCCAGCTGCGGGGGTCACCTAGGACACGTGTTCCGTGG
AGAAGGCTTCGGTAATCCCGAGCCCAACGAGCGCCACTGTGTGAATGGAT
TGTCGATCGCCTTTGTCCCTGAGTCACCTAGGACACGTGTTCCGTGGAGA
AGGCTTCGGTAATCCCGAGCCCAACGAGCGCCACTGTGTGAATGGATTGT
CGATCGCCTTTGTCCCTGAG
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