mRNA_H-elongata_contig73844.15077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73844.15077.1
Unique NamemRNA_H-elongata_contig73844.15077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 7.300e-24
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTPFLNDQSDV 174
            M+A LDSQMFE+FLEERTA+ TQ EVRFFDESIAAKLNRSKTNPIKKDTPFLNDQSD 
Sbjct:  725 MNAFLDSQMFERFLEERTANPTQPEVRFFDESIAAKLNRSKTNPIKKDTPFLNDQSDA 782          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: I2CS53_NANGC (dDENN domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS53_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 9.380e-12
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTPFLNDQSDV 174
            M  ++ SQMFE+F+EER  +    +++FFDESI AKLNRSKT   K DT FL+D  D+
Sbjct:    1 MGTIIASQMFERFIEERLNEPDHPQIKFFDESIVAKLNRSKTQLKKGDTAFLDDVRDM 58          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.320e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTPFLNDQSD 171
            MS  L SQMFE+FLEE+ +   Q E+RFF+ESI  KLNR K   IKKDTPFLN+  D
Sbjct: 1030 MSVFLQSQMFERFLEEQLSHPDQPEIRFFEESIVQKLNRGK-KIIKKDTPFLNNLGD 1085          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A7S1KMY1_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KMY1_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 3.470e-10
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   10 LLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTPFLNDQS 168
            LL++Q F++F+++RT +   AEV FFDESI AKLNRSK    KKDTPFLN+Q+
Sbjct:  619 LLETQAFDQFVKQRTLNNNSAEVVFFDESIQAKLNRSKLKFHKKDTPFLNNQA 671          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A1E7FED1_9STRA (DENN-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FED1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.960e-9
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   10 LLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSK---TNPIKKDTPFLNDQS 168
            +L++Q+F++FLEER  +    E+RFFDESI AK NRSK    N  KK TPFLND++
Sbjct:  823 ILNTQLFQRFLEERIENPNLPEIRFFDESIVAKRNRSKKAIANGGKKSTPFLNDKT 878          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A7S4AW33_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AW33_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-7
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSK-TNPI---KKDTPFLNDQS 168
            +  +L +Q+F +FLEER  +    E+RFFDESI AK NRSK TN +   KK TPFL+D+S
Sbjct:  199 LKKVLKTQLFHRFLEERKENPDLPEIRFFDESIVAKRNRSKKTNLVIGGKKPTPFLDDRS 258          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A448Z0U8_9STRA (UDENN domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0U8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.410e-7
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   10 LLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPI----KKDTPFLNDQS 168
            +L +Q+F++FLEER  +    E+RFFDESIAAK NRSK   +    K+ TPFL+D++
Sbjct:  910 VLKTQLFQRFLEERRENPNLPEIRFFDESIAAKRNRSKKASLAMKGKQPTPFLDDKT 966          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A1V9Z028_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z028_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-6
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKK-DTPFLNDQSDV 174
            +S +++SQMF++F E+R  + T  EV FFD++I  KLNRS T   KK D  FL D+SDV
Sbjct:  664 LSIMIESQMFQRFCEDRLYNPTLNEVVFFDQAINQKLNRSLTIGKKKLDVSFLEDKSDV 722          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A7R9Z6T2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z6T2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.660e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTPFL 156
            +S L+ +Q F+ F+ +R  D T  +V FFD+SI AKLNRS+    K DTPFL
Sbjct:   49 LSELVLTQQFDDFVAKRMYDPTAPDVTFFDQSINAKLNRSRLKFRKADTPFL 100          
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Match: A0A7S1G5V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5V3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.750e-6
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    7 ALLDSQMFEKFLEERTA-DATQAEVRFFDESIAAKLNRSKTNPIKKDTPFL 156
            AL+D+Q F  F++ER   D    +V FFDESIAAKLNRS+    K  TPFL
Sbjct:  556 ALIDTQAFCNFVDERIEPDLNNVDVAFFDESIAAKLNRSRFKMAKNKTPFL 606          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73844.15077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LU92_ECTSI7.300e-2487.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CS53_NANGC9.380e-1253.45dDENN domain-containing protein (Fragment) n=1 Tax... [more]
A0A836CKZ6_9STRA7.320e-1161.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1KMY1_9EUKA3.470e-1060.38Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A1E7FED1_9STRA7.960e-955.36DENN-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S4AW33_9STRA1.320e-753.33Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448Z0U8_9STRA3.410e-750.88UDENN domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A1V9Z028_9STRA1.630e-650.85Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7R9Z6T2_9STRA3.660e-650.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1G5V3_9STRA7.750e-654.90Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73844contigH-elongata_contig73844:1616..1789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog2880.D8LU92
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionuDENN domain
Ec32 orthologEc-14_004120.2
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.7306974-CDS-H-elongata_contig73844:1615..17891622931142.7306974-CDS-H-elongata_contig73844:1615..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73844 1616..1789 -
1691679716.0670063-CDS-H-elongata_contig73844:1615..17891691679716.0670063-CDS-H-elongata_contig73844:1615..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73844 1616..1789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73844.15077.1prot_H-elongata_contig73844.15077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73844 1616..1789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73844.15077.1

>prot_H-elongata_contig73844.15077.1 ID=prot_H-elongata_contig73844.15077.1|Name=mRNA_H-elongata_contig73844.15077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MSALLDSQMFEKFLEERTADATQAEVRFFDESIAAKLNRSKTNPIKKDTP
FLNDQSDV
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mRNA from alignment at H-elongata_contig73844:1616..1789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73844.15077.1 ID=mRNA_H-elongata_contig73844.15077.1|Name=mRNA_H-elongata_contig73844.15077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig73844:1616..1789- (Himanthalia elongata Himel1 dioecious)
ATGAGCGCGCTCCTGGACAGCCAGATGTTCGAGAAGTTCCTGGAGGAGAG GACGGCTGACGCGACACAGGCGGAGGTTCGCTTCTTCGACGAGAGCATCG CGGCCAAGCTAAACCGCAGCAAGACGAATCCCATCAAAAAGGACACCCCG TTTCTCAACGATCAGTCCGACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig73844:1616..1789-

>mRNA_H-elongata_contig73844.15077.1 ID=mRNA_H-elongata_contig73844.15077.1|Name=mRNA_H-elongata_contig73844.15077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig73844:1616..1789- (Himanthalia elongata Himel1 dioecious)
ATGAGCGCGCTCCTGGACAGCCAGATGTTCGAGAAGTTCCTGGAGGAGAG
GACGGCTGACGCGACACAGGCGGAGGTTCGCTTCTTCGACGAGAGCATCG
CGGCCAAGCTAAACCGCAGCAAGACGAATCCCATCAAAAAGGACACCCCG
TTTCTCAACGATCAGTCCGACGTGATGAGCGCGCTCCTGGACAGCCAGAT
GTTCGAGAAGTTCCTGGAGGAGAGGACGGCTGACGCGACACAGGCGGAGG
TTCGCTTCTTCGACGAGAGCATCGCGGCCAAGCTAAACCGCAGCAAGACG
AATCCCATCAAAAAGGACACCCCGTTTCTCAACGATCAGTCCGACGTG
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