mRNA_H-elongata_contig73812.15076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73812.15076.1
Unique NamemRNA_H-elongata_contig73812.15076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73812.15076.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.530e-37
Identity = 91/157 (57.96%), Postives = 108/157 (68.79%), Query Frame = 1 
Query:  226 RGTGVTMPELELFDLVAGGAFERALEDMG-------GVWSYLPLFLQMLRDGNSRSGAEAGDRFDKLLR----VVVQNRRADSTEDYLNVAKECCALLRKVLAPSSSSNTSK--------------SSKSSSRADLRAVSPVPGLGTVGGGSGMGPA 621
            RG G  MP+L+LFDLVAGGAFERALE MG       GVWSYLPLFLQMLRDG+++SGAE GDRFDKLLR    VVVQNRRADSTEDYLN+A++CC  LRK   P++++ +S+              S+ SS   D R+ SPVP  G  G G+  GPA
Sbjct:   47 RGRG--MPKLQLFDLVAGGAFERALEGMGRQEGGEEGVWSYLPLFLQMLRDGSTKSGAEVGDRFDKLLRELVRVVVQNRRADSTEDYLNIARDCCTHLRKGPTPTTTTASSRMASRLATSSPQPLHSAPSSKTTDSRSASPVP-AGGGGEGAQQGPA 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73812.15076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZF6_ECTSI1.530e-3757.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73812contigH-elongata_contig73812:547..2379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size622
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73812.15076.1prot_H-elongata_contig73812.15076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73812 547..2379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.5867302-CDS-H-elongata_contig73812:546..7561622931142.5867302-CDS-H-elongata_contig73812:546..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 547..756 -
1691679716.0120246-CDS-H-elongata_contig73812:546..7561691679716.0120246-CDS-H-elongata_contig73812:546..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 547..756 -
1622931142.6374023-CDS-H-elongata_contig73812:968..10701622931142.6374023-CDS-H-elongata_contig73812:968..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 969..1070 -
1691679716.0251436-CDS-H-elongata_contig73812:968..10701691679716.0251436-CDS-H-elongata_contig73812:968..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 969..1070 -
1622931142.6547472-CDS-H-elongata_contig73812:1698..19691622931142.6547472-CDS-H-elongata_contig73812:1698..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 1699..1969 -
1691679716.0433788-CDS-H-elongata_contig73812:1698..19691691679716.0433788-CDS-H-elongata_contig73812:1698..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 1699..1969 -
1622931142.6774547-CDS-H-elongata_contig73812:2341..23791622931142.6774547-CDS-H-elongata_contig73812:2341..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 2342..2379 -
1691679716.0571775-CDS-H-elongata_contig73812:2341..23791691679716.0571775-CDS-H-elongata_contig73812:2341..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73812 2342..2379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73812.15076.1

>prot_H-elongata_contig73812.15076.1 ID=prot_H-elongata_contig73812.15076.1|Name=mRNA_H-elongata_contig73812.15076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
AHLAISEAGDVRRKFVSSYTLKRAMDPMDEGHEDRTALRRLSRENLARAK
QSADKKRPTNPVMIAAEGAKSSCLIRGTGVTMPELELFDLVAGGAFERAL
EDMGGVWSYLPLFLQMLRDGNSRSGAEAGDRFDKLLRVVVQNRRADSTED
YLNVAKECCALLRKVLAPSSSSNTSKSSKSSSRADLRAVSPVPGLGTVGG
GSGMGPA
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mRNA from alignment at H-elongata_contig73812:547..2379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73812.15076.1 ID=mRNA_H-elongata_contig73812.15076.1|Name=mRNA_H-elongata_contig73812.15076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-elongata_contig73812:547..2379- (Himanthalia elongata Himel1 dioecious)
GCCCATCTGGCTATATCTGAGGCAGGCGACGTACGAAGGTGAGTCAATGT
GTTGCAATCGTGCTTTCGAGGTAAAACGGTCTCTAAATGGTCCCTGTATG
GAGCAATGTTCACCATGGTTGCCGCATATTGTTTGTGGTTTCCTAATACA
AGACGTGGGACATTTGATATCACGGTTGTATTATTAGTATAATATTGATC
CTATGTTTGAAAACACTACCGTCAGTCTGCAAATGTGTGTTACCGCGCTT
AGGGCAGCGCCAAAGGCAGGGATGTACATGTGGCCGAAGTACCCTAGCTA
GGTAAATCGAAGCCTGCTGAAGTTGTCCAAGGCTTAACTCTGATAGGCTT
CACGTGAAACCTCATTACGCCCTCATCGCATTCGTTTGCATACACACAAA
AAAAAACCAGGAAGTTTGTCTCCTCTTACACACTCAAGAGAGCCATGGAT
CCCATGGACGAGGGCCACGAGGACCGCACGGCGCTCAGGCGGCTGTCACG
TGAAAACCTTGCACGAGCGAAGCAGAGCGCCGACAAGAAGCGCCCTACAA
ATCCCGTGATGATTGCGGCGGAGGGGGCCAAGTCCTCTTGTTTGATCCGT
GGCACCGGCGTGACGATGCCCGAGCTGGAGTTGTTCGATCTGGTCGCAGG
AGGGGCCTTCGAGCGAGCACTTGAAGACATGGTCCGTAAATGGCCATCGG
CCTCTTATACTGAATAAAAATAGTCAACCCTTGCCTCACGAGAAAACTCG
ATCTTCTTCTCTCTGGGTGTGGCAGCGGCAATTGATACTTTCGGATCATG
AGCTGTATCTACGCTTTTTCGAAACGAACGAAATGCCGGCATACAACGGC
CAGCACAGTAGCACCCGAAGAGCTTAATAGAACTTGGTATTAAAATAACA
TGACACTCTAATGGTATAGCAATCTTAACGTCCATGTGTATACGAAAGAT
CTTTTGAAGCTTTCACGTGCATAATAAGCACGATCAACACTTGAGAGCCA
TGGTCGGTTGCTTGTTATCTTGTCCTTAGACACAGCAGCAAGTTTGGCTG
TGTGTATCATGTGAGTCGCCGTCGAATGTTGATCACCTCTCCCTCGGTCG
GATGGACAGACGGATTGAAGGCGGCTTTTATTGTCAAACATGTCCCTTAT
GGAGCTATCTGAAGGGGCGGCGACCTACGAGTACACAACTTGGAGGGTTA
CCAACGTCCCTAGCCCCACCTCGCCGGCAACGCTGACATGTTGCTTAACA
CTACTTTCTTCAATGCTGCTGCTGCTGTCACTGCTGCTGACCTTCGTCGG
AACATGCAGGGAGGCGTGTGGTCGTACCTGCCACTGTTCCTGCAGATGCT
ACGAGACGGTAACTCGCGCTCCGGAGCGGAAGCAGGCGATCGCTTCGACA
AGCTTCTTAGGGTAACGTTGGCATCGCCGTCGCCAGCCCTTCCTCTTGTA
CCGACGAACCAACGCCTTTCGCCCTATTCATAGTACTCTGAAGAAAGCCT
GGAGACGTTCGCATCAACGCAAGATTTGCATTTCGAACCTCCCGCCCCAC
GCTTAGAAAACCCAGTTTCAAATATCCTCATTCCTTCCCCCTCTCCCCTC
CCCACGCCCCTCTCTCATTTTAGGTGGTGGTTCAAAACCGCAGGGCAGAT
TCCACGGAGGACTACCTGAACGTCGCGAAGGAGTGCTGCGCGCTCCTTCG
CAAAGTCCTAGCCCCATCCTCTTCCTCCAATACTTCCAAGAGTTCCAAGT
CTTCTTCGAGGGCCGATCTGCGAGCCGTTTCGCCTGTGCCCGGTTTAGGA
ACAGTTGGAGGTGGGAGTGGGATGGGGCCTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig73812:547..2379-

>mRNA_H-elongata_contig73812.15076.1 ID=mRNA_H-elongata_contig73812.15076.1|Name=mRNA_H-elongata_contig73812.15076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig73812:547..2379- (Himanthalia elongata Himel1 dioecious)
GCCCATCTGGCTATATCTGAGGCAGGCGACGTACGAAGGCCCATCTGGCT
ATATCTGAGGCAGGCGACGTACGAAGGAAGTTTGTCTCCTCTTACACACT
CAAGAGAGCCATGGATCCCATGGACGAGGGCCACGAGGACCGCACGGCGC
TCAGGCGGCTGTCACGTGAAAACCTTGCACGAGCGAAGCAGAGCGCCGAC
AAGAAGCGCCCTACAAATCCCGTGATGATTGCGGCGGAGGGGGCCAAGTC
CTCTTGTTTGATCCGTGGCACCGGCGTGACGATGCCCGAGCTGGAGTTGT
TCGATCTGGTCGCAGGAGGGGCCTTCGAGCGAGCACTTGAAGACATGGAA
GTTTGTCTCCTCTTACACACTCAAGAGAGCCATGGATCCCATGGACGAGG
GCCACGAGGACCGCACGGCGCTCAGGCGGCTGTCACGTGAAAACCTTGCA
CGAGCGAAGCAGAGCGCCGACAAGAAGCGCCCTACAAATCCCGTGATGAT
TGCGGCGGAGGGGGCCAAGTCCTCTTGTTTGATCCGTGGCACCGGCGTGA
CGATGCCCGAGCTGGAGTTGTTCGATCTGGTCGCAGGAGGGGCCTTCGAG
CGAGCACTTGAAGACATGGGAGGCGTGTGGTCGTACCTGCCACTGTTCCT
GCAGATGCTACGAGACGGTAACTCGCGCTCCGGAGCGGAAGCAGGCGATC
GCTTCGACAAGCTTCTTAGGGGAGGCGTGTGGTCGTACCTGCCACTGTTC
CTGCAGATGCTACGAGACGGTAACTCGCGCTCCGGAGCGGAAGCAGGCGA
TCGCTTCGACAAGCTTCTTAGGGTGGTGGTTCAAAACCGCAGGGCAGATT
CCACGGAGGACTACCTGAACGTCGCGAAGGAGTGCTGCGCGCTCCTTCGC
AAAGTCCTAGCCCCATCCTCTTCCTCCAATACTTCCAAGAGTTCCAAGTC
TTCTTCGAGGGCCGATCTGCGAGCCGTTTCGCCTGTGCCCGGTTTAGGAA
CAGTTGGAGGTGGGAGTGGGATGGGGCCTGCGGTGGTGGTTCAAAACCGC
AGGGCAGATTCCACGGAGGACTACCTGAACGTCGCGAAGGAGTGCTGCGC
GCTCCTTCGCAAAGTCCTAGCCCCATCCTCTTCCTCCAATACTTCCAAGA
GTTCCAAGTCTTCTTCGAGGGCCGATCTGCGAGCCGTTTCGCCTGTGCCC
GGTTTAGGAACAGTTGGAGGTGGGAGTGGGATGGGGCCTGCG
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