mRNA_H-elongata_contig7377.15069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7377.15069.1
Unique NamemRNA_H-elongata_contig7377.15069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7377.15069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7377contigH-elongata_contig7377:5005..5638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7377.15069.1prot_H-elongata_contig7377.15069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7377 5020..5638 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.5658376-UTR-H-elongata_contig7377:5004..50191622931141.5658376-UTR-H-elongata_contig7377:5004..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7377 5005..5019 -
1691679715.608312-UTR-H-elongata_contig7377:5004..50191691679715.608312-UTR-H-elongata_contig7377:5004..5019Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7377 5005..5019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.5816503-CDS-H-elongata_contig7377:5019..51921622931141.5816503-CDS-H-elongata_contig7377:5019..5192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7377 5020..5192 -
1691679715.6212723-CDS-H-elongata_contig7377:5019..51921691679715.6212723-CDS-H-elongata_contig7377:5019..5192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7377 5020..5192 -
1622931141.598103-CDS-H-elongata_contig7377:5334..56381622931141.598103-CDS-H-elongata_contig7377:5334..5638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7377 5335..5638 -
1691679715.6313329-CDS-H-elongata_contig7377:5334..56381691679715.6313329-CDS-H-elongata_contig7377:5334..5638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7377 5335..5638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7377.15069.1

>prot_H-elongata_contig7377.15069.1 ID=prot_H-elongata_contig7377.15069.1|Name=mRNA_H-elongata_contig7377.15069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
VARCVQPNVQCASLDGRSHHGLHVRVVGYGGGAKPRYGNGNSHLAVSATR
DDCFDVRMPTLVVGRRLPIERHQGITVLRSLQSCRHVMSIGHVRNPQLYA
TLARSEAKEVLLPSSVLCRVVVISPCLCASPDRDVARAHARVAIFLASSG
RSPDSSDA*
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mRNA from alignment at H-elongata_contig7377:5005..5638-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7377.15069.1 ID=mRNA_H-elongata_contig7377.15069.1|Name=mRNA_H-elongata_contig7377.15069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at H-elongata_contig7377:5005..5638- (Himanthalia elongata Himel1 dioecious)
GTCGCCCGATGCGTCCAACCGAACGTTCAATGTGCGAGTCTGGACGGTCG
GAGCCATCACGGGCTCCATGTCCGCGTCGTCGGATACGGCGGCGGCGCAA
AGCCGAGATACGGCAATGGCAACAGCCACCTCGCAGTATCCGCAACACGC
GACGATTGTTTCGATGTCAGGATGCCCACTTTGGTGGTCGGCCGTCGACT
GCCCATCGAACGTCACCAAGGGATCACCGTACTTCGGTCCCTGCAGTCCT
GTCGCCATGTCATGAGCATCGGTCACGTCAGGAATCCACAGCTCTATGCG
ACTTGCCGATAACGACATCTGAATTCTCTCCAGCCACCGTAAGTTGGTCA
GTCTCGCACCGCCCAGTGCACGAGCTACTTTTGTGCGCGAGCGCCCACAC
TGCGAATGTGCGTCGTGCTGCCCTTCGTTGTCTAGCTGGTCTAAAGTGGC
GAGATCTGAAGCTAAGGAGGTCCTCCTGCCCTCGTCGGTACTTTGTCGCG
TTGTCGTCATATCGCCATGTCTGTGTGCGTCACCGGATCGCGATGTTGCA
CGAGCGCACGCCAGAGTTGCTATTTTTTTGGCATCATCGGGTCGATCCCC
TGACTCCAGTGACGCGTGAACGTCGCTACCGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig7377:5005..5638-

>mRNA_H-elongata_contig7377.15069.1 ID=mRNA_H-elongata_contig7377.15069.1|Name=mRNA_H-elongata_contig7377.15069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig7377:5005..5638- (Himanthalia elongata Himel1 dioecious)
GTCGCCCGATGCGTCCAACCGAACGTTCAATGTGCGAGTCTGGACGGTCG
GAGCCATCACGGGCTCCATGTCCGCGTCGTCGGATACGGCGGCGGCGCAA
AGCCGAGATACGGCAATGGCAACAGCCACCTCGCAGTATCCGCAACACGC
GACGATTGTTTCGATGTCAGGATGCCCACTTTGGTGGTCGGCCGTCGACT
GCCCATCGAACGTCACCAAGGGATCACCGTACTTCGGTCCCTGCAGTCCT
GTCGCCATGTCATGAGCATCGGTCACGTCAGGAATCCACAGCTCTATGCG
ACTTGTCGCCCGATGCGTCCAACCGAACGTTCAATGTGCGAGTCTGGACG
GTCGGAGCCATCACGGGCTCCATGTCCGCGTCGTCGGATACGGCGGCGGC
GCAAAGCCGAGATACGGCAATGGCAACAGCCACCTCGCAGTATCCGCAAC
ACGCGACGATTGTTTCGATGTCAGGATGCCCACTTTGGTGGTCGGCCGTC
GACTGCCCATCGAACGTCACCAAGGGATCACCGTACTTCGGTCCCTGCAG
TCCTGTCGCCATGTCATGAGCATCGGTCACGTCAGGAATCCACAGCTCTA
TGCGACTTTGGCGAGATCTGAAGCTAAGGAGGTCCTCCTGCCCTCGTCGG
TACTTTGTCGCGTTGTCGTCATATCGCCATGTCTGTGTGCGTCACCGGAT
CGCGATGTTGCACGAGCGCACGCCAGAGTTGCTATTTTTTTGGCATCATC
GGGTCGATCCCCTGACTCCAGTGACGCGTGATGGCGAGATCTGAAGCTAA
GGAGGTCCTCCTGCCCTCGTCGGTACTTTGTCGCGTTGTCGTCATATCGC
CATGTCTGTGTGCGTCACCGGATCGCGATGTTGCACGAGCGCACGCCAGA
GTTGCTATTTTTTTGGCATCATCGGGTCGATCCCCTGACTCCAGTGACGC
GTGA
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