mRNA_H-elongata_contig73745.15066.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73745.15066.1
Unique NamemRNA_H-elongata_contig73745.15066.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73745.15066.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.820e-41
Identity = 142/386 (36.79%), Postives = 180/386 (46.63%), Query Frame = 1 
Query:   70 HEKSRRDLARRKRHILVSSLRVTSASECSHREPSGKAVGKSRKAAS---SSLEFLDVDVFFPSREMEIVGCRRRDSPESDVDVDVDTLVNLEPYRREVAAQRPATFGHRPTSASRMFTPNPSPMETLSHVPG-------GAIFGERNQLGWEGFWSRKAEPREVRMPNAPKPIMAGGEKKRRALGLSAIMLKELLSGENKC-----------QXXXXXXGRKRGIRVPKVAQAPCHAVLGLNMMGAKDGSSRGSLGERGSPYGTWLSASGDANRCGQEALNVTSA----SQSSNLGHHMGQPVAVQSPEEAELRRIFFGDRP-WDGTPALLPRPQDVRRAINLLSMPDPDERLCEKFVKTRKLAAGIPVTASSIHDEARRVAKLTN 1149
            ++K  R+ +R+KR++L  S+R  SAS+ + +  + K    +R+ ++   S L+  D+  FF    ME     R   P   V+VDVDTL  LEPYRREV AQ+P TFGHRP SASRMF  NP  M T   +P        G I G +   G           R                K RR  GLSA MLK LL G+              Q           I     A  P + VL       ++  +  S+         W S   D  R   EAL    +    S  S LGH  G+     + E  EL RIF  +RP WDG PA LP PQ  RRAI+ L MPDPDERL +K +K+RK AAG+PVTASS  DE  R  +  N
Sbjct:   56 NKKPFREFSRKKRNLLAWSIRAASASDAAAQSTANKTHMPTRRLSTTVRSDLDGTDIGEFF---NMERGMSGRVLHPTDRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMF--NPCTMATSCGIPSDGHHPSTGGIRGRKKGGGGHXXXXXXXRGRN--------------SKPRRTTGLSAPMLKALLRGDTPTGEGGAALVTASQHQQELFEPNGNIVSRDSAPKPNYLVLD-----GQEDLTDSSVNSEKLDESKWRSVD-DLGR--GEALGELESWLQTSSHSGLGH--GRRRLGNTKEGQELHRIFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFN 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73745.15066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2S4_9PHAE3.820e-4136.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73745contigH-elongata_contig73745:94..2147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000180.1
Exons3
Model size1152
Cds size1152
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73745.15066.1prot_H-elongata_contig73745.15066.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73745 94..2147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.3606627-CDS-H-elongata_contig73745:93..2911622931141.3606627-CDS-H-elongata_contig73745:93..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 94..291 -
1691679715.5319524-CDS-H-elongata_contig73745:93..2911691679715.5319524-CDS-H-elongata_contig73745:93..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 94..291 -
1622931141.3770278-CDS-H-elongata_contig73745:493..13721622931141.3770278-CDS-H-elongata_contig73745:493..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 494..1372 -
1691679715.5396726-CDS-H-elongata_contig73745:493..13721691679715.5396726-CDS-H-elongata_contig73745:493..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 494..1372 -
1622931141.3908944-CDS-H-elongata_contig73745:2072..21471622931141.3908944-CDS-H-elongata_contig73745:2072..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 2073..2147 -
1691679715.5476286-CDS-H-elongata_contig73745:2072..21471691679715.5476286-CDS-H-elongata_contig73745:2072..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73745 2073..2147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73745.15066.1

>prot_H-elongata_contig73745.15066.1 ID=prot_H-elongata_contig73745.15066.1|Name=mRNA_H-elongata_contig73745.15066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
MKNPSLGKLTSADLRRTASFTVDHEKSRRDLARRKRHILVSSLRVTSASE
CSHREPSGKAVGKSRKAASSSLEFLDVDVFFPSREMEIVGCRRRDSPESD
VDVDVDTLVNLEPYRREVAAQRPATFGHRPTSASRMFTPNPSPMETLSHV
PGGAIFGERNQLGWEGFWSRKAEPREVRMPNAPKPIMAGGEKKRRALGLS
AIMLKELLSGENKCQNKCQNQGRKRGIRVPKVAQAPCHAVLGLNMMGAKD
GSSRGSLGERGSPYGTWLSASGDANRCGQEALNVTSASQSSNLGHHMGQP
VAVQSPEEAELRRIFFGDRPWDGTPALLPRPQDVRRAINLLSMPDPDERL
CEKFVKTRKLAAGIPVTASSIHDEARRVAKLTN*
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mRNA from alignment at H-elongata_contig73745:94..2147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73745.15066.1 ID=mRNA_H-elongata_contig73745.15066.1|Name=mRNA_H-elongata_contig73745.15066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2054bp|location=Sequence derived from alignment at H-elongata_contig73745:94..2147- (Himanthalia elongata Himel1 dioecious)
ATGAAGAACCCGTCGCTGGGGAAGTTGACATCTGCTGATCTGCGACGGAC
CGCTTCATTTACCGTGGATCATGAGGTTAGAATTAGGATAGATAGGTTAG
GATAGATGGAGTTATATCACCATCATCATCAGATGGTCATCATAATATAT
GTACTTCGTATATTATGTGGGGTCAATCAACAAACTCATCAATGTCATCT
ACCATAAGCCTTTACAACCGGATATACCTACCAAACATGCCGTGATCAGC
TCAACAGGCCAATCCAGCGTCTTCAGGAATAGCCCTCCATACGTGGTAGG
GTATTTGAAAACCGTTGTGGCGCCCCCTTAGGTGTAATGCCGGTTTGCGC
GGTCTAATGCAACTTGATAAAAAAGGAAAATTAAATTTCACTGCTGCCCC
CGTTCGCGTCTAAAAATTTAGTCTCGCGAGACGGGTTCGACGTTCCCATC
CCGCGTCAGCCTGCTCATTCTCTCAACCCAGGCTGAATCTGGTGCGTACT
CCCGGAATCCTCTCGATCCTCTCGCTTTCCGCGACGGCATCCATGTCTAC
CGGCAACCGCCATCGGGTCAATCCCGAATTCATCAGGTCACGCAATTGCG
CACCGATGCCTTTTACCACCGAGAGTCCGCCGGCACTGAGTCAATAGTCC
TCAATGTAGCTTGAGTAACGGGTGCAGCCTATTCAGGTAACCCCATCGAC
CATTTTTTTGTGCTATAGTAGTATACATGCTACTGATACCCCAGTCCACC
TTGCCGTTGCATTCGTGTCGTGCAGAAGTCGCGTCGAGACTTGGCCAGGA
GAAAACGGCATATTTTGGTTTCGTCCCTTCGCGTCACGTCAGCGTCGGAA
TGTAGCCACCGAGAGCCTTCAGGAAAAGCGGTTGGCAAAAGCAGAAAGGC
AGCCTCATCGAGCCTTGAATTCCTAGATGTTGATGTTTTCTTCCCCTCCA
GGGAAATGGAGATCGTTGGTTGTCGCCGCCGAGATTCCCCAGAGTCTGAC
GTTGATGTCGATGTCGACACCTTGGTGAACCTGGAACCGTATCGGCGGGA
AGTGGCAGCCCAAAGACCGGCTACATTTGGCCACAGGCCAACCTCGGCAT
CACGCATGTTCACCCCTAACCCGTCACCAATGGAAACCTTGTCGCACGTC
CCCGGTGGCGCTATTTTTGGCGAACGCAATCAACTCGGCTGGGAGGGGTT
TTGGAGTAGAAAGGCTGAACCGAGAGAAGTGCGCATGCCGAACGCACCAA
AGCCCATAATGGCGGGGGGAGAAAAAAAACGCCGAGCCCTTGGGTTGAGC
GCTATAATGCTGAAGGAATTGTTGTCCGGCGAAAACAAGTGTCAAAACAA
GTGTCAAAACCAAGGACGGAAGAGGGGAATAAGGGTACCAAAGGTGGCTC
AAGCCCCTTGCCATGCCGTGTTAGGGCTGAATATGATGGGTGCGAAAGAT
GGCTCAAGCAGAGGTTCCCTTGGAGAGAGGGGATCGCCCTATGGAACTTG
GCTATCGGCCTCTGGTGATGCTAATCGTTGTGGACAAGAAGCATTGAACG
TTACTTCGGCGAGCCAGTCAAGCAACCTAGGACATCACATGGGCCAACCG
GTCGCCGTGCAATCGCCCGAGGAGGCCGAACTGAGGCGTATATTCTTTGG
TGATGTGAGACTGATGAATAAAGGGACATCGACATTGCCACCGGTGTACA
CTATGTCATAGGGTTAGGGTTAGGGTTAGTGTCCTAGTTTGGGAGGCGCA
TCTTCTGTGAAAGAAAAGCGATATTTGAATAGAGCCTACCCTCCGCCTCC
TGCCATCGACTGCTCGAATCTTGCGATGACTTATTTACTTTTTTAATCCC
ACACAGCGACCATGGGATGGAACGCCAGCGCTACTGCCTAGGCCTCAAGA
TGTTCGACGGGCTATTAATTTGCTGTCGATGCCAGACCCCGACGAAAGGT
TATGTGAAAAGTTCGTCAAGACCAGGAAACTCGCCGCAGGAATACCTGTC
ACCGCTTCCAGCATTCACGACGAGGCAAGAAGGGTGGCAAAACTGACAAA
TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig73745:94..2147-

>mRNA_H-elongata_contig73745.15066.1 ID=mRNA_H-elongata_contig73745.15066.1|Name=mRNA_H-elongata_contig73745.15066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig73745:94..2147- (Himanthalia elongata Himel1 dioecious)
ATGAAGAACCCGTCGCTGGGGAAGTTGACATCTGCTGATCTGCGACGGAC
CGCTTCATTTACCGTGGATCATGAGATGAAGAACCCGTCGCTGGGGAAGT
TGACATCTGCTGATCTGCGACGGACCGCTTCATTTACCGTGGATCATGAG
AAGTCGCGTCGAGACTTGGCCAGGAGAAAACGGCATATTTTGGTTTCGTC
CCTTCGCGTCACGTCAGCGTCGGAATGTAGCCACCGAGAGCCTTCAGGAA
AAGCGGTTGGCAAAAGCAGAAAGGCAGCCTCATCGAGCCTTGAATTCCTA
GATGTTGATGTTTTCTTCCCCTCCAGGGAAATGGAGATCGTTGGTTGTCG
CCGCCGAGATTCCCCAGAGTCTGACGTTGATGTCGATGTCGACACCTTGG
TGAACCTGGAACCGTATCGGCGGGAAGTGGCAGCCCAAAGACCGGCTACA
TTTGGCCACAGGCCAACCTCGGCATCACGCATGTTCACCCCTAACCCGTC
ACCAATGGAAACCTTGTCGCACGTCCCCGGTGGCGCTATTTTTGGCGAAC
GCAATCAACTCGGCTGGGAGGGGTTTTGGAGTAGAAAGGCTGAACCGAGA
GAAGTGCGCATGCCGAACGCACCAAAGCCCATAATGGCGGGGGGAGAAAA
AAAACGCCGAGCCCTTGGGTTGAGCGCTATAATGCTGAAGGAATTGTTGT
CCGGCGAAAACAAGTGTCAAAACAAGTGTCAAAACCAAGGACGGAAGAGG
GGAATAAGGGTACCAAAGGTGGCTCAAGCCCCTTGCCATGCCGTGTTAGG
GCTGAATATGATGGGTGCGAAAGATGGCTCAAGCAGAGGTTCCCTTGGAG
AGAGGGGATCGCCCTATGGAACTTGGCTATCGGCCTCTGGTGATGCTAAT
CGTTGTGGACAAGAAGCATTGAACGTTACTTCGGCGAGCCAGTCAAGCAA
CCTAGGACATCACATGGGCCAACCGGTCGCCGTGCAATCGCCCGAGGAGG
CCGAACTGAGGCGTATATTCTTTGGTGATAAGTCGCGTCGAGACTTGGCC
AGGAGAAAACGGCATATTTTGGTTTCGTCCCTTCGCGTCACGTCAGCGTC
GGAATGTAGCCACCGAGAGCCTTCAGGAAAAGCGGTTGGCAAAAGCAGAA
AGGCAGCCTCATCGAGCCTTGAATTCCTAGATGTTGATGTTTTCTTCCCC
TCCAGGGAAATGGAGATCGTTGGTTGTCGCCGCCGAGATTCCCCAGAGTC
TGACGTTGATGTCGATGTCGACACCTTGGTGAACCTGGAACCGTATCGGC
GGGAAGTGGCAGCCCAAAGACCGGCTACATTTGGCCACAGGCCAACCTCG
GCATCACGCATGTTCACCCCTAACCCGTCACCAATGGAAACCTTGTCGCA
CGTCCCCGGTGGCGCTATTTTTGGCGAACGCAATCAACTCGGCTGGGAGG
GGTTTTGGAGTAGAAAGGCTGAACCGAGAGAAGTGCGCATGCCGAACGCA
CCAAAGCCCATAATGGCGGGGGGAGAAAAAAAACGCCGAGCCCTTGGGTT
GAGCGCTATAATGCTGAAGGAATTGTTGTCCGGCGAAAACAAGTGTCAAA
ACAAGTGTCAAAACCAAGGACGGAAGAGGGGAATAAGGGTACCAAAGGTG
GCTCAAGCCCCTTGCCATGCCGTGTTAGGGCTGAATATGATGGGTGCGAA
AGATGGCTCAAGCAGAGGTTCCCTTGGAGAGAGGGGATCGCCCTATGGAA
CTTGGCTATCGGCCTCTGGTGATGCTAATCGTTGTGGACAAGAAGCATTG
AACGTTACTTCGGCGAGCCAGTCAAGCAACCTAGGACATCACATGGGCCA
ACCGGTCGCCGTGCAATCGCCCGAGGAGGCCGAACTGAGGCGTATATTCT
TTGGTGATCGACCATGGGATGGAACGCCAGCGCTACTGCCTAGGCCTCAA
GATGTTCGACGGGCTATTAATTTGCTGTCGATGCCAGACCCCGACGAAAG
GTTATGTGAAAAGTTCGTCAAGACCAGGAAACTCGCCGCAGGAATACCTG
TCACCGCTTCCAGCATTCACGACGAGGCAAGAAGGGTGGCAAAACTGACA
AATTAACGACCATGGGATGGAACGCCAGCGCTACTGCCTAGGCCTCAAGA
TGTTCGACGGGCTATTAATTTGCTGTCGATGCCAGACCCCGACGAAAGGT
TATGTGAAAAGTTCGTCAAGACCAGGAAACTCGCCGCAGGAATACCTGTC
ACCGCTTCCAGCATTCACGACGAGGCAAGAAGGGTGGCAAAACTGACAAA
TTAA
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