mRNA_H-elongata_contig73743.15065.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73743.15065.1
Unique NamemRNA_H-elongata_contig73743.15065.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73743.15065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73743contigH-elongata_contig73743:1230..2049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size155
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.28896-CDS-H-elongata_contig73743:1231..13071622931141.28896-CDS-H-elongata_contig73743:1231..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73743 1232..1307 -
1691679715.5159526-CDS-H-elongata_contig73743:1231..13071691679715.5159526-CDS-H-elongata_contig73743:1231..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73743 1232..1307 -
1622931141.31501-CDS-H-elongata_contig73743:1972..20491622931141.31501-CDS-H-elongata_contig73743:1972..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73743 1973..2049 -
1691679715.523885-CDS-H-elongata_contig73743:1972..20491691679715.523885-CDS-H-elongata_contig73743:1972..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73743 1973..2049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73743.15065.1prot_H-elongata_contig73743.15065.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73743 1232..2049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73743.15065.1

>prot_H-elongata_contig73743.15065.1 ID=prot_H-elongata_contig73743.15065.1|Name=mRNA_H-elongata_contig73743.15065.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
EGGTRRRSPRPSLDLKIRKAREDILRRPGRFLIPAASNIVAVVHVRVVGA
S
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mRNA from alignment at H-elongata_contig73743:1230..2049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73743.15065.1 ID=mRNA_H-elongata_contig73743.15065.1|Name=mRNA_H-elongata_contig73743.15065.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at H-elongata_contig73743:1230..2049- (Himanthalia elongata Himel1 dioecious)
GAGGGGGGAACCCGGCGTAGATCCCCGCGCCCCTCGCTTGACTTGAAAAT
CCGAAAGGCGCGCGAAGATATACTGAGGCATGGAGGAGCTTGTAACAACG
CATCAGCCCGCTCATTTTCTGAATCAAATATTTATCCGTGCCGTCTCTCT
TTCCCAATCATTGCCGTTTCCCTTTTCAGGAGCGTACCTATCAATAAATA
GTCCGTTGTATTTTTGGTATTTTTCTACCTTGTGACCAGGGGGGGCTAGA
TTTTGAAATCAGCTTGTGTGAAAATTTTACAATCAGTTCAATCAACGACT
TGCGGGTCGGAAATGGAATGTGTAACAAAAAAGAAGGCGAGAGGGAGAAA
TCAATTATCAACCAATCAATATTCAACCATTGTAAATCGAAGCGTCACCA
AAAAACAGAACATAAAAAAATCGAAGAAGGAAATAGGGTACAAAGCCTAA
CAATAAGGTACTCAGCCCACCTATCGACGCAATTCAAGGCTCTTCCCTTC
CTGGGCGAATAAACAGGTCACCCATGAGACGGGAAGGTGGGGAACCCCTG
GCCCCCGCGCCTTTCCACTGTACACACACTCTCCCCATAAGAAAGGCGGA
ATCTGTCCCGAGACCCAGCTGATCCTCGACTTCCTCTTGGCAGATGGACG
GGGCGGTGAGAAACGGCATCACGACCTAAACCCCGTGTTCATACCGCGAC
TGCTGCTTCCTCCGCCCCCCATGACCCTCCGCTTCTGCCTAGGCGGCCGG
GGAGGTTCCTCATCCCAGCTGCCTCCAACATCGTCGCCGTAGTACACGTC
CGCGTCGTAGGGGCCTCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig73743:1230..2049-

>mRNA_H-elongata_contig73743.15065.1 ID=mRNA_H-elongata_contig73743.15065.1|Name=mRNA_H-elongata_contig73743.15065.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig73743:1230..2049- (Himanthalia elongata Himel1 dioecious)
GAGGGGGGAACCCGGCGTAGATCCCCGCGCCCCTCGCTTGACTTGAAAAT
CCGAAAGGCGCGCGAAGATATACTGAGGAGGGGGGAACCCGGCGTAGATC
CCCGCGCCCCTCGCTTGACTTGAAAATCCGAAAGGCGCGCGAAGATATAC
TGAGGCGGCCGGGGAGGTTCCTCATCCCAGCTGCCTCCAACATCGTCGCC
GTAGTACACGTCCGCGTCGTAGGGGCCTCCGCGGCCGGGGAGGTTCCTCA
TCCCAGCTGCCTCCAACATCGTCGCCGTAGTACACGTCCGCGTCGTAGGG
GCCTCC
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