prot_H-elongata_contig7374.15064.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7374.15064.1
Unique Nameprot_H-elongata_contig7374.15064.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length445
Homology
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Match: A0A6H5KFK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK5_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 7.920e-43
Identity = 157/454 (34.58%), Postives = 210/454 (46.26%), Query Frame = 0
Query:   62 THDAMVGLGVKDLGQHLRELGVRADGCRIALAAVARVFNACILTRQLAAKQCAEVRTELARAVAGCFTRAAIVSDTRAVVREAAKRSRTLIMRLVDLELQCWTFPPLL-----SNRSKKMLRLCLPGLLSVLYLKHETYGMDWEARRDNTVENDIHSSFHVGEINESSTVAEEDCTGGDSGS----------------------------CSSGGS---RCRHNKSGIQSSRSPSDRRRRSESSMGTHAAARGVTLSLSYVGLQDDALQQVDLRNAHHQTGRVEK----SPARRRETGDAKDDTCKLN-LDKDTVVPLSQLLLQGNLLTDTGALALCPLVAASPNLRTIDLRWNPIGRRGVVALRK-----------------------------ALASNPWVYRVTREDSCGGGETYTKGKSGGVVLRARRRPKTTISDRARAYAFTVIPPSS 445
            T + M  LG+  LGQ LRE GVR +G R+AL AVAR+  A  LTR+LAA+QCAEVRTELA  +     RA +VSDTRA  R  +  +RT+++RLV  E+Q W           S+  K+ +R        + +          E   + +  +D H + +V    ++   A     G DS +                             S GG    R R    G + +     +R++       H A  G TL+LS V L D  L QV  +     T R            ++ G  KD     N L   T++PL  LLL+GN LTD GA+AL PLV AS +L  IDLR N I  +G +AL+K                             AL  +PWVYRVT E+  G         +GGVVLRA+RRP +T+ DRARA+AF  IPPS+
Sbjct:   36 TRETMAVLGLDTLGQSLRERGVRGEGARMALTAVARLLGALRLTRRLAAQQCAEVRTELALTLGRLSCRAMLVSDTRAAARRTSICNRTVLLRLVRSEMQLWRLRAAAAELQQSSNEKEAMRTAQAEQGGLFF-------SPGEGDANPSTSDDKHPA-NVRRYQDAERAAVTMNWGTDSETEXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKGGRGERRSRIQPKGKEGTGFERAQRKK-------HPAGAGFTLNLSGVDLDDQTLHQVVRKLLRQCTDRSRAWSGAGAMHEQQGGAGKDGRNGQNTLSSSTIMPLRCLLLRGNNLTDAGAIALVPLVEASCSLAAIDLRGNRIETKGELALKKVMACGVTGGRATKRSLEHRIMFEESLNQGALTRSPWVYRVTSEEVSGSDAREGSTSTGGVVLRAKRRPMSTVRDRARAHAFKRIPPSN 474          
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Match: D7G0E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E3_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 6.060e-38
Identity = 140/381 (36.75%), Postives = 184/381 (48.29%), Query Frame = 0
Query:  106 RQLAAKQCAEVRTELARAVAGCFTRAAIVSDTRAVVREAAKRSRTLIMRLVDLELQCWTFPPLL-----SNRSKKMLRLCL---------PGL----LSVLYLKHET------------YGMDW------EARRDNTVENDIHSSFHVGEINESSTVAEEDCTGGDSGSCSSGGSRCRHNKSGIQSSRSPSDRRRRSESSMGTHAAARGVTLSLSYVGLQDDALQQVDLRNAHHQTGRVEKSP---ARRRETGDAKDD--TCKLNLDKDTVVPLSQLLLQGNLLTDTGALALCPLVAASPNLRTIDLRWNPIGRRGVVALRKALASNPWVYRVTREDSCGGGETYTKGKSGGVVLRARRRPKTTISDRARAYAFTVIPPSS 445
            R LAA+QCAEVRTELA A+     RA +VSDTRA  R  +  +RTL++RLV  E++ W           S R K++LR  L         PG      S  Y KH T            + ++W      EA  D                 +   +  E   GG       G  R R    G + +     +R++  +  G H       L+LS   L D+ L QV  +     T R    P   A   + G A +D    +  L    ++PL  LLL+GN LTD GALAL PLV AS +L  IDLR N IG +G +AL+KAL  +PWVYRVT E++ G         +GGVVLRA+RRP +T+ DRARA+AF  IPPS+
Sbjct:  433 RHLAAQQCAEVRTELALALGRLSCRAMLVSDTRAAARRTSICNRTLLLRLVRSEMRLWRLRAAAAATEQSAREKEVLRTALTERGRPFFPPGEGDANPSTTYDKHPTNVCRSPDAESAAFTVNWGTDSEIEAAGDGXXXXXXXXXXXXXXYGDGEEI--ERSIGG------RGERRSRMQPKGNEGTGVERAKRKKRPAGAGFH-------LNLSGFDLDDETLHQVVRKLLRQCTDRSRAWPGAGAMYEQQGGAGEDGRNGQNTLSSSAIMPLRCLLLRGNNLTDAGALALVPLVEASSSLAAIDLRGNRIGTKGELALKKALTRSPWVYRVTSEEASGSDAREGSISTGGVVLRAKRRPMSTVRDRARAHAFKRIPPSN 798          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFK5_9PHAE7.920e-4334.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E3_ECTSI6.060e-3836.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 328..399
e-value: 2.2E-10
score: 42.3
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 363..384
e-value: 0.021
score: 14.8
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 337..395

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7374contigH-elongata_contig7374:5065..8954 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7374.15064.1mRNA_H-elongata_contig7374.15064.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7374 5065..9195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7374.15064.1 ID=prot_H-elongata_contig7374.15064.1|Name=mRNA_H-elongata_contig7374.15064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=445bp
MPQQQPARQRDQPHRNDERQPPMLEVVRVCRESKQDVEDLGAEWRWDLAP
AECSTSGQHKDTHDAMVGLGVKDLGQHLRELGVRADGCRIALAAVARVFN
ACILTRQLAAKQCAEVRTELARAVAGCFTRAAIVSDTRAVVREAAKRSRT
LIMRLVDLELQCWTFPPLLSNRSKKMLRLCLPGLLSVLYLKHETYGMDWE
ARRDNTVENDIHSSFHVGEINESSTVAEEDCTGGDSGSCSSGGSRCRHNK
SGIQSSRSPSDRRRRSESSMGTHAAARGVTLSLSYVGLQDDALQQVDLRN
AHHQTGRVEKSPARRRETGDAKDDTCKLNLDKDTVVPLSQLLLQGNLLTD
TGALALCPLVAASPNLRTIDLRWNPIGRRGVVALRKALASNPWVYRVTRE
DSCGGGETYTKGKSGGVVLRARRRPKTTISDRARAYAFTVIPPSS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt