mRNA_H-elongata_contig73668.15058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73668.15058.1
Unique NamemRNA_H-elongata_contig73668.15058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.810e-20
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   19 LEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            LEAKGFRNPFRLA+ P SG+V++AD+GL++AES+ VV NPLEA E  +M NYGWPC+EG+
Sbjct:  284 LEAKGFRNPFRLAVSPVSGDVIIADVGLDSAESIKVVPNPLEAAETVSMPNYGWPCIEGD 343          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A323V9N6_9ACTN (Glucose/arabinose dehydrogenase n=1 Tax=Modestobacter versicolor TaxID=429133 RepID=A0A323V9N6_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 9.150e-10
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEG 195
            D+   ++ A G RNPFR+A+ PG+  + ++D+G  T+E LN + NP      AA+ N+GWPC EG
Sbjct:  289 DANARRIVAYGLRNPFRMAVRPGTSELWISDVGWATSEELNRIPNPT-----AAVTNFGWPCYEG 348          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: UPI000A2F6247 (PQQ-dependent sugar dehydrogenase n=1 Tax=Catelliglobosispora koreensis TaxID=129052 RepID=UPI000A2F6247)

HSP 1 Score: 62.4 bits (150), Expect = 9.160e-10
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            D    ++ A G RNPFR+A+ PG+  V   D+G NT E +N V NP      A + N+GWPC EGN
Sbjct:  250 DLNTRRIVANGLRNPFRIAMKPGTNEVWAGDVGWNTWEEINRVVNPT-----AGVTNFGWPCYEGN 310          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A7C3QL76_9CHLR (Sugar dehydrogenase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3QL76_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 2.310e-9
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   16 QLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            ++ A G RNPFRLA+ PG+  + + D+G N+ E +N V +P ++     + N+GWPC EGN
Sbjct:  291 RIVAYGLRNPFRLAVRPGTNEIWIGDVGWNSREEMNRVADPTDSY----VDNFGWPCYEGN 347          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: UPI001EDE939B (discoidin domain-containing protein n=1 Tax=Dactylosporangium sp. AC04546 TaxID=2862460 RepID=UPI001EDE939B)

HSP 1 Score: 60.5 bits (145), Expect = 4.380e-9
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEG 195
            D+   ++ A GFRNP+RLA+ PG+  V VAD G +  E ++ V +P      AA+ NYGWPC EG
Sbjct:  271 DANAKRIVAYGFRNPYRLAVRPGTNEVWVADTGWSRWEEIDRVVSPT-----AAVTNYGWPCYEG 330          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A8F8U5M8_9ACTN (GSDH domain-containing protein n=1 Tax=Nonomuraea coxensis DSM 45129 TaxID=1122611 RepID=A0A8F8U5M8_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 7.540e-9
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   25 AKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEG 195
            A G RNPFR+A+ PG+  + + ++G NT E +N V NP      A + N+GWPC EG
Sbjct:  171 AHGLRNPFRMAVRPGTSEIWLGEVGWNTVEEINRVVNPT-----AGVTNFGWPCYEG 222          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A8J4E924_9ACTN (PKD domain-containing protein n=1 Tax=Virgisporangium ochraceum TaxID=65505 RepID=A0A8J4E924_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 9.900e-8
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            D+   ++ + G RNPFR A+ PG+  V + ++G N  E +N  R P +      MGNYGWPC EGN
Sbjct:  255 DANARRIVSYGLRNPFRFAMRPGTNEVWLTEVGWNGYEEVN--RVPTDT-----MGNYGWPCYEGN 313          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A8J7KH60_9ACTN (Alpha-amylase n=1 Tax=Longispora fulva TaxID=619741 RepID=A0A8J7KH60_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 9.960e-8
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            D+   ++ + G RNPFRLA+ PG+  V   D+G NT E L+ +  P          N+GWPC EGN
Sbjct:  269 DANARRISSYGLRNPFRLAVRPGTSEVWAGDVGWNTWEELDRLATP--------GSNFGWPCHEGN 326          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: A0A0K3AV47_9PSEU (Cytochrome c551/c552 n=1 Tax=Kibdelosporangium sp. MJ126-NF4 TaxID=703222 RepID=A0A0K3AV47_9PSEU)

HSP 1 Score: 55.8 bits (133), Expect = 1.830e-7
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEGN 198
            D+   ++ A G RNPFR+AI PG+  + V D+G  T E +N +    +A       N+GWPC EGN
Sbjct:   36 DANAKRVVAYGLRNPFRMAIRPGTNELWVGDVGWGTWEEINRITTTGDA----VAENFGWPCYEGN 97          
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Match: UPI001D100D69 (PQQ-dependent sugar dehydrogenase n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D100D69)

HSP 1 Score: 54.3 bits (129), Expect = 6.480e-7
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   19 LEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAEEGAAMGNYGWPCMEG 195
            L A G RNPFRLA+ PG+  V + D+G N+ E L+ + +  +     A+ N+GWPC EG
Sbjct:  287 LIAHGLRNPFRLAVRPGTDEVWIGDVGWNSWEELDRIDSATDD----AVENFGWPCREG 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73668.15058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.810e-2068.33PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A323V9N6_9ACTN9.150e-1043.08Glucose/arabinose dehydrogenase n=1 Tax=Modestobac... [more]
UPI000A2F62479.160e-1045.45PQQ-dependent sugar dehydrogenase n=1 Tax=Catellig... [more]
A0A7C3QL76_9CHLR2.310e-942.62Sugar dehydrogenase (Fragment) n=1 Tax=Chloroflexi... [more]
UPI001EDE939B4.380e-946.15discoidin domain-containing protein n=1 Tax=Dactyl... [more]
A0A8F8U5M8_9ACTN7.540e-945.61GSDH domain-containing protein n=1 Tax=Nonomuraea ... [more]
A0A8J4E924_9ACTN9.900e-842.42PKD domain-containing protein n=1 Tax=Virgisporang... [more]
A0A8J7KH60_9ACTN9.960e-840.91Alpha-amylase n=1 Tax=Longispora fulva TaxID=61974... [more]
A0A0K3AV47_9PSEU1.830e-740.91Cytochrome c551/c552 n=1 Tax=Kibdelosporangium sp.... [more]
UPI001D100D696.480e-744.07PQQ-dependent sugar dehydrogenase n=1 Tax=Aquihabi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73668contigH-elongata_contig73668:923..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog1121272.KB903249_gene1521
EggNOG free text desc.Repeats in polycystic kidney disease 1 (PKD1) and other proteins
EggNOG OGs2GJFY@201174,4DASA@85008,COG1404@1,COG1404@2,COG2133@1,COG2133@2,COG3291@1,COG3291@2
COG Functional cat.G
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.540622-CDS-H-elongata_contig73668:922..11201622931140.540622-CDS-H-elongata_contig73668:922..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73668 923..1120 -
1691679715.1965346-CDS-H-elongata_contig73668:922..11201691679715.1965346-CDS-H-elongata_contig73668:922..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73668 923..1120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73668.15058.1prot_H-elongata_contig73668.15058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73668 923..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73668.15058.1

>prot_H-elongata_contig73668.15058.1 ID=prot_H-elongata_contig73668.15058.1|Name=mRNA_H-elongata_contig73668.15058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
DSPLNQLEAKGFRNPFRLAILPGSGNVVVADMGLNTAESLNVVRNPLEAE
EGAAMGNYGWPCMEGN
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mRNA from alignment at H-elongata_contig73668:923..1120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73668.15058.1 ID=mRNA_H-elongata_contig73668.15058.1|Name=mRNA_H-elongata_contig73668.15058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig73668:923..1120- (Himanthalia elongata Himel1 dioecious)
GATTCTCCCTTGAATCAGCTGGAGGCCAAGGGTTTCCGCAACCCATTTCG CTTGGCCATTCTGCCGGGCTCTGGCAACGTTGTAGTTGCTGACATGGGGC TGAACACCGCGGAGAGCCTCAACGTAGTACGTAACCCGCTCGAGGCGGAG GAGGGCGCGGCGATGGGGAACTACGGCTGGCCATGCATGGAGGGTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig73668:923..1120-

>mRNA_H-elongata_contig73668.15058.1 ID=mRNA_H-elongata_contig73668.15058.1|Name=mRNA_H-elongata_contig73668.15058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig73668:923..1120- (Himanthalia elongata Himel1 dioecious)
GATTCTCCCTTGAATCAGCTGGAGGCCAAGGGTTTCCGCAACCCATTTCG
CTTGGCCATTCTGCCGGGCTCTGGCAACGTTGTAGTTGCTGACATGGGGC
TGAACACCGCGGAGAGCCTCAACGTAGTACGTAACCCGCTCGAGGCGGAG
GAGGGCGCGGCGATGGGGAACTACGGCTGGCCATGCATGGAGGGTAACGA
TTCTCCCTTGAATCAGCTGGAGGCCAAGGGTTTCCGCAACCCATTTCGCT
TGGCCATTCTGCCGGGCTCTGGCAACGTTGTAGTTGCTGACATGGGGCTG
AACACCGCGGAGAGCCTCAACGTAGTACGTAACCCGCTCGAGGCGGAGGA
GGGCGCGGCGATGGGGAACTACGGCTGGCCATGCATGGAGGGTAAC
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