mRNA_H-elongata_contig7366.15056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7366.15056.1
Unique NamemRNA_H-elongata_contig7366.15056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7366.15056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7366contigH-elongata_contig7366:8367..8694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size328
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.1176388-CDS-H-elongata_contig7366:8366..86691622931140.1176388-CDS-H-elongata_contig7366:8366..8669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7366 8367..8669 +
1691679715.0549912-CDS-H-elongata_contig7366:8366..86691691679715.0549912-CDS-H-elongata_contig7366:8366..8669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7366 8367..8669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.138578-UTR-H-elongata_contig7366:8669..86941622931140.138578-UTR-H-elongata_contig7366:8669..8694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7366 8670..8694 +
1691679715.0638885-UTR-H-elongata_contig7366:8669..86941691679715.0638885-UTR-H-elongata_contig7366:8669..8694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7366 8670..8694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7366.15056.1prot_H-elongata_contig7366.15056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7366 8367..8669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7366.15056.1

>prot_H-elongata_contig7366.15056.1 ID=prot_H-elongata_contig7366.15056.1|Name=mRNA_H-elongata_contig7366.15056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PRRRLASYLARSRRPRRRSHLSRSACLEFLRPHSVRSIGGSRFYSLFFLV
AANNIFSLTIVALADERLLRFFSQLFNTRTYPSSDRGSSSSSSSSSGGGV
*
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mRNA from alignment at H-elongata_contig7366:8367..8694+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7366.15056.1 ID=mRNA_H-elongata_contig7366.15056.1|Name=mRNA_H-elongata_contig7366.15056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=328bp|location=Sequence derived from alignment at H-elongata_contig7366:8367..8694+ (Himanthalia elongata Himel1 dioecious)
CCCCGTCGACGGCTGGCCTCTTACCTTGCGAGGTCCCGTCGCCCTCGCCG
CCGAAGTCACCTTTCTCGAAGCGCCTGCCTTGAGTTTCTGCGTCCCCACT
CGGTTCGTAGCATCGGGGGAAGCCGTTTTTATTCCCTCTTCTTTCTTGTC
GCTGCCAACAATATTTTCTCTCTGACCATCGTCGCACTCGCGGACGAGCG
ATTGCTTCGCTTCTTCTCGCAGTTGTTCAATACCAGAACATACCCCTCCT
CCGACCGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGTG
TGAACCCGAACCTGATTTAGAGCTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig7366:8367..8694+

>mRNA_H-elongata_contig7366.15056.1 ID=mRNA_H-elongata_contig7366.15056.1|Name=mRNA_H-elongata_contig7366.15056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig7366:8367..8694+ (Himanthalia elongata Himel1 dioecious)
CCCCGTCGACGGCTGGCCTCTTACCTTGCGAGGTCCCGTCGCCCTCGCCG
CCGAAGTCACCTTTCTCGAAGCGCCTGCCTTGAGTTTCTGCGTCCCCACT
CGGTTCGTAGCATCGGGGGAAGCCGTTTTTATTCCCTCTTCTTTCTTGTC
GCTGCCAACAATATTTTCTCTCTGACCATCGTCGCACTCGCGGACGAGCG
ATTGCTTCGCTTCTTCTCGCAGTTGTTCAATACCAGAACATACCCCTCCT
CCGACCGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGTG
TGACCCCGTCGACGGCTGGCCTCTTACCTTGCGAGGTCCCGTCGCCCTCG
CCGCCGAAGTCACCTTTCTCGAAGCGCCTGCCTTGAGTTTCTGCGTCCCC
ACTCGGTTCGTAGCATCGGGGGAAGCCGTTTTTATTCCCTCTTCTTTCTT
GTCGCTGCCAACAATATTTTCTCTCTGACCATCGTCGCACTCGCGGACGA
GCGATTGCTTCGCTTCTTCTCGCAGTTGTTCAATACCAGAACATACCCCT
CCTCCGACCGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGC
GTGTGA
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