prot_H-elongata_contig73656.15054.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73656.15054.1
Unique Nameprot_H-elongata_contig73656.15054.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.940e-20
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCGSDNLIK KDPIQCRQCGYRIMYKKRTKRLIQFEAR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A197K819_9FUNG (DNA-directed RNA polymerase I n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K819_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 6.550e-17
Identity = 30/38 (78.95%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            +CGSDN IKPK+PI+C++CGYRIMYKKRTKR++QFEAR
Sbjct:   24 ECGSDNEIKPKEPIRCKECGYRIMYKKRTKRMVQFEAR 61          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A1Y1WJV6_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJV6_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 1.830e-16
Identity = 29/38 (76.32%), Postives = 37/38 (97.37%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCG+DN IKPK+PI+CR+CGYRI+YKKRTK+++QFEAR
Sbjct:   23 DCGADNDIKPKEPIRCRECGYRILYKKRTKKMVQFEAR 60          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.010e-15
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCG+ N IK KDPIQCR CGYRIMYK RTKRLIQFEAR
Sbjct:   21 DCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A2R6WQG7_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WQG7_MARPO)

HSP 1 Score: 70.9 bits (172), Expect = 1.900e-15
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCG+DN +KP D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   18 DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 55          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A139A9U2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A9U2_GONPJ)

HSP 1 Score: 70.9 bits (172), Expect = 1.950e-15
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            +CG+DN +KPK+PI+C  CGYRIMYKKRTKR++QFEAR
Sbjct:   19 ECGADNELKPKEPIRCTNCGYRIMYKKRTKRMVQFEAR 56          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A9U0K9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U0K9_PHYPA)

HSP 1 Score: 70.9 bits (172), Expect = 1.950e-15
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCG+DN +KP D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   19 DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A1Y1VGP6_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VGP6_9FUNG)

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-15
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCG +N I+PK+PI+C++CGYRIMYKKRTKR++QFEAR
Sbjct:   20 DCGVENDIRPKEPIRCKECGYRIMYKKRTKRMVQFEAR 57          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A5C2SFF4_9APHY (Uncharacterized protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SFF4_9APHY)

HSP 1 Score: 71.2 bits (173), Expect = 2.040e-15
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCGS N IKP++PI+CRQCG+RIMYKKRT R++QFEAR
Sbjct:   35 DCGSSNEIKPREPIRCRQCGHRIMYKKRTNRMVQFEAR 72          
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A371DKT3_9APHY (Uncharacterized protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DKT3_9APHY)

HSP 1 Score: 71.2 bits (173), Expect = 2.150e-15
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 0
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 38
            DCGS N IKP++PI+CRQCG+RIMYKKRT R++QFEAR
Sbjct:   37 DCGSSNEIKPREPIRCRQCGHRIMYKKRTNRMVQFEAR 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI6.940e-2097.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A197K819_9FUNG6.550e-1778.95DNA-directed RNA polymerase I n=1 Tax=Linnemannia ... [more]
A0A1Y1WJV6_9FUNG1.830e-1676.32Uncharacterized protein n=1 Tax=Linderina pennispo... [more]
A0A836C8S5_9STRA1.010e-1584.21DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
A0A2R6WQG7_MARPO1.900e-1573.68Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A139A9U2_GONPJ1.950e-1573.68Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A9U0K9_PHYPA1.950e-1573.68Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1Y1VGP6_9FUNG2.000e-1573.68Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A5C2SFF4_9APHY2.040e-1576.32Uncharacterized protein n=2 Tax=Lentinus tigrinus ... [more]
A0A371DKT3_9APHY2.150e-1576.32Uncharacterized protein n=2 Tax=Polyporus TaxID=56... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 1..38
e-value: 6.6E-14
score: 62.2
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 1..28
e-value: 3.0E-14
score: 52.4
NoneNo IPR availableGENE3D2.20.28.30coord: 1..38
e-value: 1.2E-21
score: 77.7
NoneNo IPR availablePRODOMPD012151coord: 1..38
e-value: 6.0E-10
score: 148.0
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 1..38
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 1..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73656contigH-elongata_contig73656:1601..2702 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73656.15054.1mRNA_H-elongata_contig73656.15054.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73656 235..2702 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73656.15054.1 ID=prot_H-elongata_contig73656.15054.1|Name=mRNA_H-elongata_contig73656.15054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4