mRNA_H-elongata_contig7357.15048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7357.15048.1
Unique NamemRNA_H-elongata_contig7357.15048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: D7G3Z7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z7_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.520e-86
Identity = 125/137 (91.24%), Postives = 132/137 (96.35%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GF+AKPM K+D+STDLLRWECGLPGP  TDWAGGLY VTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFD+PNPNSPAQSEAYQLFVTNKEEY+RRVRLEA+KN PS+
Sbjct:   23 GFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPST 159
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A7S2Y0C7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C7_9STRA)

HSP 1 Score: 243 bits (619), Expect = 8.860e-75
Identity = 104/135 (77.04%), Postives = 125/135 (92.59%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAP 405
            GFYA+PM  +DNST+L++WECG+PGPE TDW GG+YK+TMEF+E+YPSKPPKCKFVPPLFHPNVYPSGT+CLSIL+E+E WRPAITIKQMLLGI DL D+PNPNSPAQS+AYQL++T++ EY RRVR+EA+KN P
Sbjct:   33 GFYARPMMSDDNSTNLMKWECGMPGPEGTDWEGGMYKLTMEFSEEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEEEDWRPAITIKQMLLGIQDLLDNPNPNSPAQSDAYQLYITDRAEYNRRVRMEARKNIP 167
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)

HSP 1 Score: 235 bits (600), Expect = 4.500e-72
Identity = 102/135 (75.56%), Postives = 122/135 (90.37%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAP 405
            GFYA+P+   DNS +L++W+CG+PG   +DWAGG+YK++MEFT++YPSKPPKCKFVPPLFHPNVYPSGT+CLSIL+ED+GWRPAITIKQMLLGI DL D+PNPNSPAQSEAYQ+FV N+ EY RRVRLEA+KN P
Sbjct:   24 GFYARPVSNPDNSMNLMKWDCGIPGVASSDWAGGVYKLSMEFTDEYPSKPPKCKFVPPLFHPNVYPSGTVCLSILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A6U0IJL9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IJL9_9STRA)

HSP 1 Score: 235 bits (599), Expect = 6.140e-72
Identity = 105/137 (76.64%), Postives = 123/137 (89.78%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GFYA+P  K D S++L++W  G+PG E TDW+GG+YKVT+EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+EGWRPAITIKQMLLGI DL D PNPNSPAQSEAYQLF+ NK EY+RRV+ EA+KNAPS+
Sbjct:   24 GFYARPESKGDGSSNLMKWATGIPGKENTDWSGGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYQLFMNNKPEYKRRVKAEARKNAPST 160
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: F0YIG1_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIG1_AURAN)

HSP 1 Score: 233 bits (593), Expect = 3.940e-71
Identity = 107/137 (78.10%), Postives = 120/137 (87.59%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GFYA+P    DNST+L+RWE G+PG   TDW  GLYKVTMEFT+DYPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+E WRPAITIKQMLLGI DL D+PNPNSPAQS+AYQLFV++K EY++RVR EA KNAP S
Sbjct:   18 GFYARPGSNPDNSTNLMRWETGIPGKAGTDWEAGLYKVTMEFTDDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEDWRPAITIKQMLLGIQDLLDTPNPNSPAQSDAYQLFVSDKAEYKKRVRQEAAKNAPPS 154
[Close]
BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A7S4RZR8_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4RZR8_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.060e-70
Identity = 100/137 (72.99%), Postives = 123/137 (89.78%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GF+A+P+ + D ST++++WE G+PG E TDW+GG+YKVTMEFT++YPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+EGWRPAIT+KQ+LLGI DL D PNPNSPAQSEAY LF+ NK EY+RRV+ EA+KN P++
Sbjct:   27 GFFARPLSQGDGSTNMMKWETGIPGKEGTDWSGGVYKVTMEFTDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQILLGIQDLLDEPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPNN 163
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BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A7S4HWQ1_9STRA (Hypothetical protein n=3 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4HWQ1_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.290e-70
Identity = 104/137 (75.91%), Postives = 121/137 (88.32%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GFYA+P  K D STDL++WE G+PG E TDWA G+YKVT+EF+E+YPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+EGWRPAITIKQMLLGI DL D PNPNSPAQSEAY L++ N+ EY+RRV+ EA+KN P+S
Sbjct:   63 GFYARPTSKGDGSTDLMKWESGVPGKEGTDWATGVYKVTLEFSEEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYNLYMNNRSEYKRRVKAEARKNTPAS 199
[Close]
BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: W7T3J1_9STRA (Ubiquitin-conjugating enzyme e2 i n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3J1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.680e-70
Identity = 102/137 (74.45%), Postives = 120/137 (87.59%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GF A+P+   D S +L+ W+C +PG E TDW GG++KVTMEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSIL+EDE WRPAIT+KQMLLGI DL DSPNP SPAQ++AYQLFVTN+EEYRRRVR+EAK+N P+S
Sbjct:   24 GFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
[Close]
BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: B8BY49_THAPS (Ubiquitin conjugating enzyme n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BY49_THAPS)

HSP 1 Score: 229 bits (585), Expect = 7.770e-70
Identity = 100/137 (72.99%), Postives = 121/137 (88.32%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS 411
            GFYA+P+ + D S+DL++WE G+PG E TDW  G+YKV +EF+++YPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+EGWRPAIT+KQMLLGI DL D+PNPNSPAQSEAY LF+ NK EY+RRV+ EA+KN PS+
Sbjct:   25 GFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPST 161
[Close]
BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Match: A0A448ZL65_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZL65_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.970e-69
Identity = 100/135 (74.07%), Postives = 119/135 (88.15%), Query Frame = 1 
Query:    1 GFYAKPMFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSPAQSEAYQLFVTNKEEYRRRVRLEAKKNAP 405
            GFYA+P  K D S+D+++WE G+PG E TDW  G++KV+MEF+EDYPSKPPKCKFVPPLFHPNVYPSGTICLSIL+E+EGWRPAIT+KQ+L+GI DL D PNPNSPAQSEAYQLF+ NK EY+RRV+ EA+KN P
Sbjct:   24 GFYARPTSKGDGSSDIMKWEAGIPGKEGTDWENGVFKVSMEFSEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLFIHNKTEYKRRVQAEARKNTP 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7357.15048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Z7_ECTSI2.520e-8691.24UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2Y0C7_9STRA8.860e-7577.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YNI1_9STRA4.500e-7275.56Ubiquitin conjugating enzyme n=1 Tax=Tribonema min... [more]
A0A6U0IJL9_9STRA6.140e-7276.64Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
F0YIG1_AURAN3.940e-7178.10UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A7S4RZR8_9STRA1.060e-7072.99Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID... [more]
A0A7S4HWQ1_9STRA1.290e-7075.91Hypothetical protein n=3 Tax=Eupodiscales TaxID=33... [more]
W7T3J1_9STRA2.680e-7074.45Ubiquitin-conjugating enzyme e2 i n=2 Tax=Monodops... [more]
B8BY49_THAPS7.770e-7072.99Ubiquitin conjugating enzyme n=2 Tax=Thalassiosira... [more]
A0A448ZL65_9STRA1.970e-6974.07UBC core domain-containing protein n=2 Tax=Bacilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7357contigH-elongata_contig7357:2144..5922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue3.5e-67
Seed eggNOG ortholog2880.D7G3Z7
Preferred namehus5
KEGG koko:K10577
KEGG Pathwayko03013,ko04064,ko04120,ko05206,map03013,map04064,map04120,map05206
KEGG ModuleM00427
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000819,GO:0001101,GO:0002178,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008610,GO:0008641,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016604,GO:0016605,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017059,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019787,GO:0019789,GO:0019899,GO:0019904,GO:0019941,GO:0019948,GO:0022402,GO:0022414,GO:0030148,GO:0030163,GO:0031211,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033235,GO:0033993,GO:0034311,GO:0034312,GO:0034641,GO:0035339,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044388,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048285,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051231,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0090407,GO:0097164,GO:0097305,GO:0098796,GO:0098813,GO:0098827,GO:0099086,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1902494,GO:1902679,GO:1902850,GO:1903047,GO:1903182,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903755,GO:1904502,GO:1904504,GO:1905961,GO:1990234,GO:1990356,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0424@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-19_000670.1
Exons5
Model size1554
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.4014711-UTR-H-elongata_contig7357:2143..21611622931139.4014711-UTR-H-elongata_contig7357:2143..2161Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7357 2144..2161 +
1691679714.745475-UTR-H-elongata_contig7357:2143..21611691679714.745475-UTR-H-elongata_contig7357:2143..2161Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7357 2144..2161 +
1622931139.5122335-UTR-H-elongata_contig7357:4782..59221622931139.5122335-UTR-H-elongata_contig7357:4782..5922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7357 4783..5922 +
1691679714.82657-UTR-H-elongata_contig7357:4782..59221691679714.82657-UTR-H-elongata_contig7357:4782..5922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7357 4783..5922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.4159923-CDS-H-elongata_contig7357:2161..22211622931139.4159923-CDS-H-elongata_contig7357:2161..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 2162..2221 +
1691679714.7648156-CDS-H-elongata_contig7357:2161..22211691679714.7648156-CDS-H-elongata_contig7357:2161..2221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 2162..2221 +
1622931139.4316862-CDS-H-elongata_contig7357:3294..33631622931139.4316862-CDS-H-elongata_contig7357:3294..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 3295..3363 +
1691679714.775009-CDS-H-elongata_contig7357:3294..33631691679714.775009-CDS-H-elongata_contig7357:3294..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 3295..3363 +
1622931139.4481661-CDS-H-elongata_contig7357:3743..38141622931139.4481661-CDS-H-elongata_contig7357:3743..3814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 3744..3814 +
1691679714.7842762-CDS-H-elongata_contig7357:3743..38141691679714.7842762-CDS-H-elongata_contig7357:3743..3814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 3744..3814 +
1622931139.4707797-CDS-H-elongata_contig7357:4101..42301622931139.4707797-CDS-H-elongata_contig7357:4101..4230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 4102..4230 +
1691679714.7986798-CDS-H-elongata_contig7357:4101..42301691679714.7986798-CDS-H-elongata_contig7357:4101..4230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 4102..4230 +
1622931139.4900053-CDS-H-elongata_contig7357:4715..47821622931139.4900053-CDS-H-elongata_contig7357:4715..4782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 4716..4782 +
1691679714.816868-CDS-H-elongata_contig7357:4715..47821691679714.816868-CDS-H-elongata_contig7357:4715..4782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7357 4716..4782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7357.15048.1prot_H-elongata_contig7357.15048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7357 2162..4782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7357.15048.1

>prot_H-elongata_contig7357.15048.1 ID=prot_H-elongata_contig7357.15048.1|Name=mRNA_H-elongata_contig7357.15048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MFKEDNSTDLLRWECGLPGPELTDWAGGLYKVTMEFTEDYPSKPPKCKFV
PPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDSPNPNSP
AQSEAYQLFVTNKEEYRRRVRLEAKKNAPSS*
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mRNA from alignment at H-elongata_contig7357:2144..5922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7357.15048.1 ID=mRNA_H-elongata_contig7357.15048.1|Name=mRNA_H-elongata_contig7357.15048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3779bp|location=Sequence derived from alignment at H-elongata_contig7357:2144..5922+ (Himanthalia elongata Himel1 dioecious)
GGATTCTACGCCAAGCCCATGTTCAAGGAGGACAACTCTACGGATCTCTT
ACGCTGGGAGTGTGGACTTCCCGGGCCGGTGAGTGAGCGATTTACGAGAA
GGAAATGTCTACTACAAGTAGATATATCGAAGACAAAGCAATTACCCAAC
TGTTGTTAAAAGTATGCCTCTAAACGATACACAAGGGCCAGAAAAGCTGG
GGAAGCTCGATAATTGGTCATAGTTCCCTTGACTTCACCCGTGGGGTGAT
GGAAGGTGTAGATGTTCGGGGTATTTTTATTGAGGCCATGTTTTTTTCCC
AAAATGTGCTCTCTAGTTAAAAAATTATACATCCACTATTAATAGATGTT
GAAGATGACAACTCTCCTTCCACACCGTAGATACTTGTTTTTATTTGTAA
ACATATAAAATCATTGAAACCCTCCGAACATCCACGCCTTCTTAGCACTA
TGAGAGGTGCAGTCCAGGGGACCAACTATCGTCAGATTCCAATGTGGACA
AAAATGTCATTTGTGATTATTCGTGTTCCCCGGTGGTAAATTCATCGGGT
CGACAGGTCGATACACATACATCCTTAGCCAGCGCTAGCGTCTGCGCCCT
GATATATTTTCCCTCCTTCCCTGACCTTGAACCTCTACTGCACATGTGTT
ATGGCCTATCGTACTTTCTGGTGAATATTTGGTGCTCATAGTTGGTCATA
GTCCCCTTGACTCTACCACTTAAAGTGTAATAAATGAAGGTGTGGATGTT
CGGAAGGTTTGATTGATTTCAGCGTGTTTTGAAAAACAAACAAAAATTCG
GCAGAGAGTGACTATGGCAGGAAGAGAAAGATATATATACATATCTCGCG
ACAAAAAATGTTTGCAAGAGTACATGGGACATGGCAACAATCGAAAGCGC
AGCGAACCAGTGGCGCGCTCGAGCAGAACCCAAGACTCCTGCCTCGGAGT
CGGAGACATTCATTTTGGTGAAGCAATGGGTTGTGCTGAGCTGCGATGCG
AGGTGTAGCTAGTCTAGTATGCCTCCGTGGTATTTCGTTTGCTAACAAAA
TTGGTTAATCGGAAGGAAAGAGAAAATTGGTGTTTGTTTTGTCTGTTGTA
TGGAGTAAAAAAGCAACGTATGGAACGCTTGCGCGATCCCTTGTTCGGCA
GGAGCTTACCGACTGGGCCGGGGGATTGTACAAGGTCACGATGGAGTTCA
CGGAGGACTACCCGTCCAAGGTTAGCCGGTCGGAAAACCCCGTATGTTGC
CATGCTCAAGCGTTGTCCCGTGTTCACGTCGGACGATAACGCCTTGCACG
TTGACCTGGAAACACTTCAAATCGATGAAAAGTACCTATTGATAAGTCTC
TCGACGCGCTGCGTGATCCTCTTCTCTGCGCTCCAATACCAAAGTCAACG
CTTCTCCCTAGCTTTCACATTTTAGGTGTAAATTCGCTCGGCTGATAATC
TCAGGGTGCGTTGCCTGAAGAGCTTGTCCGCGATTCGAGTTTTTTTTTTA
CGGGGTCGCCGCGCCATCTCTTGTCTGCCGTCGGCGCTTCTCCCCTTATT
GTTTCCCGCGCCCGCACCCAAACGTTCCCGCTGGCAATTGACGGCCGCAG
CCGCCCAAGTGCAAGTTCGTTCCTCCGCTGTTCCACCCCAACGTCTACCC
GTCGGGCACAATCTGTCTCAGGTGCGCGAGGCACCGTGTGTTGATTACAG
TAGGGACAAGGTAGGAATGGGTGTGGGTTTTGCACTGAATTCCGAGGCAT
TTGCGTTCGCGGATCTATGATCGAATGTGGGATTGTTCATGGACGGTGGT
GTGCATCGTTCATCTCTGGGGTGATCTCTGCCGCTGCATGATGTCGTGCT
TGTCGCCAGTCTTGTCTTAAACCGAGGGCTGGCTCTCGTTTCTCGCCGTG
TCAGTTACCGCGCGTGCCCTTTTTTTGCCGTTGGATTTGAAATGTTCGCG
CTTGCCAGCATCCTCGATGAGGACGAGGGTTGGAGGCCGGCCATCACGAT
CAAACAGATGCTACTTGGAATCCACGATCTGTTCGACTCGCCAAACCCCA
ACAGTCCCGCGCAGTCCGAGGCGTACCAACTCTTTGTGTGAGTGATTTCC
TTTTCTCTCATCGTGGCTCGCACCACCACAAAAAATAGCTTTCATATATA
TATATATATATATATAACTATCTATATACCGCCTTGAAATTTATAGTAGA
CTTTTCCCGTCCTTTTGAGAAAGAAGTTTTTGATTTGAACGAACAACATC
CTAAATGAAGCAATGGCTTACAGCCCGATAAGGTTGTCTAGCTGTGTCCT
TCCTCGTCCAGCTGTGGCATTTACGATTACGCGGACACGTAGAATCCTAG
GGTATATTAGTCATGTCGGCAACTTACAGTGATCGAAAGAGTGCAATGGT
CGCGCCGTAAGCAGCCCACACTTCCCAAGGTCATCAAAGCGTTCCTGCCT
TACTTTTTGGACGAGCGAAGTCCTGTCCGAACTCTCATCGGAATTTCGTA
GCATACCGTCGAAAATTTCAGATGTCACCTCTCTTCCATCGAAATATATC
TTGTTCGGCAACCGATCGACAGGACGAATAAGGAGGAATATAGGCGACGG
GTACGACTCGAGGCCAAGAAAAATGCTCCGTCAAGTTGACCCCGAGGCCA
AGCCATACGAGATGATGGAGCGCGGCGGATGTCGGGGAAAATATCGCGGC
ATCAACACCGTTGCCGTAAAGCACACCGGAACGCGGTGTTGGCGAACAGG
ACTGCAGTGGAGTGGATTTTGTTTTTTTATATTTATAAACAGTATAGATA
TATATTCCGTGGGTCGAAAGATAAGGCGCTTTGGGGCGCAAAGGCGTTTC
ATTCTTAGCTATTTTCGGCTGCAACGCTTTGCCCGTCTACCCCCCCCACT
TAAGCTTCTGTGTGGAGGCGTTTTTTCTTTTTCATCTGTGGTTCGCTCGG
TTGTAGCCGATAAAAAAACTGCGCGTGCTGTAAATCAGAGTTTGGTGAAT
CGCTTCGCAGGCAATGTCAGACAGGGAAGATAAATATATGATATATAGAG
AGGGTTTTTTTTTTCGCTAGATGGCATGCCCGTTTTCCTATGCACTCATA
ATTACGACTGACAGTGGAATAGCTGAGATACGCCCATCCTCGCCTACAGT
AGTAACGTATATTTTAGACCCACAGCGATGCCTGCCTCTCAACCTAACGA
GCTCCGTGATGCTTTTTATCGTGGGTCACGCAAGGCTATGTACTGCTTTA
TAGTTTAGCAAGTGATGTCAGGACATGCTTGCAAGGCTCGCGCGCGAGTT
GGTTTACAGGGTCGGCGTGAAAGCACACCGTGGACCGCCGGGATACAGTG
CGTGAAGATATGCACACTAACAGGCAGGCTACGAACTTGGAAAGTGACTC
CCACGAAGCAACGGGTACACTCGCCATGGCTCGAATCGGTTGATGTTGGC
AATGGTACGCCGGTAAAGGCACATGTAGCATTGTTTGTGTTCTGGTATCT
GGCGCAGGTCAGGTTGACTTTGTTTTATACATACTTTGGTACTGCGGGTT
ATTTATTTCTTAAAAAAACATATGAACTCATTCAACCCTCCGAACATCTA
CGCCGCCTTCTTACTCGTAGAAACGTGAGAACTATCGTCAGGTTCGATAT
ACTGTATTGCATAATAAAAATGGAATGACAACACATACGATCTCAAGGGG
AATAAACATCGCAGGAGATTTCTATTAAGAAAAAATCGCCAGGGATCTTT
AATTTTTTCAAAACAAAAAAATAGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig7357:2144..5922+

>mRNA_H-elongata_contig7357.15048.1 ID=mRNA_H-elongata_contig7357.15048.1|Name=mRNA_H-elongata_contig7357.15048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig7357:2144..5922+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAAGGAGGACAACTCTACGGATCTCTTACGCTGGGAGTGTGGACT
TCCCGGGCCGATGTTCAAGGAGGACAACTCTACGGATCTCTTACGCTGGG
AGTGTGGACTTCCCGGGCCGGAGCTTACCGACTGGGCCGGGGGATTGTAC
AAGGTCACGATGGAGTTCACGGAGGACTACCCGTCCAAGGAGCTTACCGA
CTGGGCCGGGGGATTGTACAAGGTCACGATGGAGTTCACGGAGGACTACC
CGTCCAAGCCGCCCAAGTGCAAGTTCGTTCCTCCGCTGTTCCACCCCAAC
GTCTACCCGTCGGGCACAATCTGTCTCAGCCGCCCAAGTGCAAGTTCGTT
CCTCCGCTGTTCCACCCCAACGTCTACCCGTCGGGCACAATCTGTCTCAG
CATCCTCGATGAGGACGAGGGTTGGAGGCCGGCCATCACGATCAAACAGA
TGCTACTTGGAATCCACGATCTGTTCGACTCGCCAAACCCCAACAGTCCC
GCGCAGTCCGAGGCGTACCAACTCTTTGTCATCCTCGATGAGGACGAGGG
TTGGAGGCCGGCCATCACGATCAAACAGATGCTACTTGGAATCCACGATC
TGTTCGACTCGCCAAACCCCAACAGTCCCGCGCAGTCCGAGGCGTACCAA
CTCTTTGTGACGAATAAGGAGGAATATAGGCGACGGGTACGACTCGAGGC
CAAGAAAAATGCTCCGTCAAGTTGAGACGAATAAGGAGGAATATAGGCGA
CGGGTACGACTCGAGGCCAAGAAAAATGCTCCGTCAAGTTGA
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