prot_H-elongata_contig73562.15046.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73562.15046.1
Unique Nameprot_H-elongata_contig73562.15046.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 53.5 bits (127), Expect = 2.220e-6
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAE--CSRVLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D S     +    S+V     GEAFP++GTGS+ L    E       L++V + P LSHHL+S+ ++
Sbjct:  353 WIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLTPTLE-------LHNVLYVPALSHHLISVPQL 424          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: A0A2P6Q6A6_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6A6_ROSCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.510e-5
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAE-CSRVLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D S     +      +    GEAFP++G+GS+ +    E       L++V + P LSHHL+S+ ++
Sbjct:   14 WIIDSGASDHMTYDKSYFTDLSSPLVSYVTNANGEAFPVLGSGSVCITPTLE-------LHNVLYVPDLSHHLISVPQL 85          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: A0A2P6R6I2_ROSCH (Putative RNA-directed DNA polymerase n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R6I2_ROSCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.520e-5
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAECSR----VLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D +    + E S      +    GEAFP++GTGS+ +          ++L++V + P LSHHL+S+ ++
Sbjct:  120 WIIDSGASDHMTYDKTY---FTELSSPPVSYVTNANGEAFPVLGTGSIRI-------TPTLQLHNVLYVPDLSHHLISVPQL 191          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: A0A2P6PGT1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGT1_ROSCH)

HSP 1 Score: 50.8 bits (120), Expect = 2.000e-5
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAECS-RVLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D S     +      +    GEAFP++G+GS+ +    E       L++V + P LSHHL+S+ ++
Sbjct:   52 WIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 123          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: R4XGN1_TAPDE (Uncharacterized protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XGN1_TAPDE)

HSP 1 Score: 50.8 bits (120), Expect = 2.040e-5
Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAECSRV-LRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRIADAG 82
            WILDSGAT HFTH    LA + +     +   GG    +VG G +T+    +     + L+DV + P +  +LLS + I   G
Sbjct:  456 WILDSGATSHFTHQKDWLADFEDVPHYNVSAAGGHKLTVVGKGKVTI----KSDTFSMTLSDVMYCPQIQENLLSTKGIVSKG 534          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: A0A2P6RT72_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RT72_ROSCH)

HSP 1 Score: 50.4 bits (119), Expect = 2.830e-5
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAECS-RVLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D S     +      +    GEAFP++G+GS+ +    E       L++V + P LSHHL+S+ ++
Sbjct:   49 WIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRVTPTLE-------LHNVLYVPDLSHHLISVPQL 120          
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Match: A0A2P6SHX0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SHX0_ROSCH)

HSP 1 Score: 50.1 bits (118), Expect = 3.730e-5
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 0
Query:    1 WILDSGATGHFTHDGSKLAGYAECS----RVLRGVGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHAPGLSHHLLSLRRI 78
            WI+DSGA+ H T+D S    + E S      +    GEAFP++G+GS+ +    E       L++V + P LSHHL+S+ ++
Sbjct:   14 WIIDSGASDHMTYDKSF---FTELSPPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73562.15046.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI001AD8DC382.220e-640.00uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A2P6Q6A6_ROSCH1.510e-535.44Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6R6I2_ROSCH1.520e-535.37Putative RNA-directed DNA polymerase n=3 Tax=Rosa ... [more]
A0A2P6PGT1_ROSCH2.000e-535.44Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
R4XGN1_TAPDE2.040e-534.94Uncharacterized protein n=1 Tax=Taphrina deformans... [more]
A0A2P6RT72_ROSCH2.830e-535.44Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6SHX0_ROSCH3.730e-536.59Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73562contigH-elongata_contig73562:680..925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73562.15046.1mRNA_H-elongata_contig73562.15046.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73562 680..925 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73562.15046.1 ID=prot_H-elongata_contig73562.15046.1|Name=mRNA_H-elongata_contig73562.15046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
WILDSGATGHFTHDGSKLAGYAECSRVLRGVGGEAFPIVGTGSLTLCVRS
EGGVVRVKLNDVAHAPGLSHHLLSLRRIADAG
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