prot_H-elongata_contig73532.15044.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73532.15044.1
Unique Nameprot_H-elongata_contig73532.15044.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.040e-18
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    5 GAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            GAIKNCFIRGSVVRYIQIPS+DVDTELLQDACRKE  QGK
Sbjct:   55 GAIKNCFIRGSVVRYIQIPSADVDTELLQDACRKESAQGK 94          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.930e-15
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    5 GAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQG 43
            GA+K CFIRGS VRYIQIP+S+VDTELLQDACRKE   G
Sbjct:   55 GALKGCFIRGSAVRYIQIPASEVDTELLQDACRKENASG 93          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A8C4RE61_ERPCA (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4RE61_ERPCA)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-14
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0
Query:    1 SIAQGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            S+ Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE VQ K
Sbjct:   31 SVDQLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAVQQK 74          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A2I3T8S5_PANTR (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated n=15 Tax=Euarchontoglires TaxID=314146 RepID=A0A2I3T8S5_PANTR)

HSP 1 Score: 67.4 bits (163), Expect = 9.590e-14
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 0
Query:    1 SIAQGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            S+ Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct:   31 SVDQLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQK 74          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A7SNR1_NEMVE (U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=Hexacorallia TaxID=6102 RepID=A7SNR1_NEMVE)

HSP 1 Score: 66.6 bits (161), Expect = 3.210e-13
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            ++KNCFIRGSVVRY+Q+PS +VDT+LLQDA RKE +Q K
Sbjct:   56 SVKNCFIRGSVVRYVQLPSEEVDTQLLQDATRKEAMQNK 94          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A7L2NNT6_PYCJO (LSM2 protein (Fragment) n=1 Tax=Pycnonotus jocosus TaxID=182897 RepID=A0A7L2NNT6_PYCJO)

HSP 1 Score: 65.5 bits (158), Expect = 4.110e-13
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    4 QGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct:   22 QLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQK 62          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A8C7Y104_9TELE (Smx5 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7Y104_9TELE)

HSP 1 Score: 65.5 bits (158), Expect = 4.210e-13
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    4 QGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            Q ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE +Q K
Sbjct:   23 QLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQK 63          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.310e-13
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            A+KNCFIRGSVVRYIQIPS +VDTELLQDA RKE    K
Sbjct:   67 ALKNCFIRGSVVRYIQIPSGEVDTELLQDAARKENAPQK 105          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: Q5BL46_XENTR (U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=Euteleostomi TaxID=117571 RepID=Q5BL46_XENTR)

HSP 1 Score: 66.2 bits (160), Expect = 4.550e-13
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            ++KNCFIRGSVVRY+Q+P+ +VDT+LLQDA RKE VQ K
Sbjct:   56 SVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAVQQK 94          
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Match: UPI001884BD19 (LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm2 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=UPI001884BD19)

HSP 1 Score: 66.2 bits (160), Expect = 5.820e-13
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    6 AIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK 44
            ++KNCFIRGSVVRY+Q+P+ ++DT+LLQDA RKE  QGK
Sbjct:   66 SVKNCFIRGSVVRYVQLPADEIDTQLLQDATRKEAQQGK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73532.15044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI1.040e-1892.50U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A835YRK1_9STRA9.930e-1579.49U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A8C4RE61_ERPCA3.350e-1468.18LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A0A2I3T8S5_PANTR9.590e-1465.91LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
A7SNR1_NEMVE3.210e-1371.79U6 snRNA-associated Sm-like protein LSm2 n=6 Tax=H... [more]
A0A7L2NNT6_PYCJO4.110e-1368.29LSM2 protein (Fragment) n=1 Tax=Pycnonotus jocosus... [more]
A0A8C7Y104_9TELE4.210e-1368.29Smx5 n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A... [more]
A0A7S3PVL2_9STRA4.310e-1379.49U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
Q5BL46_XENTR4.550e-1371.79U6 snRNA-associated Sm-like protein LSm2 n=8 Tax=E... [more]
UPI001884BD195.820e-1369.23LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like p... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 3..44
e-value: 9.9E-11
score: 42.9
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 6..44
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73532contigH-elongata_contig73532:1201..1335 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73532.15044.1mRNA_H-elongata_contig73532.15044.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73532 1201..1335 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73532.15044.1 ID=prot_H-elongata_contig73532.15044.1|Name=mRNA_H-elongata_contig73532.15044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
SIAQGAIKNCFIRGSVVRYIQIPSSDVDTELLQDACRKEGVQGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf