mRNA_H-elongata_contig735.15037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig735.15037.1
Unique NamemRNA_H-elongata_contig735.15037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig735.15037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig735contigH-elongata_contig735:5555..5942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size388
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.149563-CDS-H-elongata_contig735:5554..58871622931138.149563-CDS-H-elongata_contig735:5554..5887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig735 5555..5887 +
1691679714.1894333-CDS-H-elongata_contig735:5554..58871691679714.1894333-CDS-H-elongata_contig735:5554..5887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig735 5555..5887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.1622646-UTR-H-elongata_contig735:5887..59421622931138.1622646-UTR-H-elongata_contig735:5887..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig735 5888..5942 +
1691679714.201765-UTR-H-elongata_contig735:5887..59421691679714.201765-UTR-H-elongata_contig735:5887..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig735 5888..5942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig735.15037.1prot_H-elongata_contig735.15037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig735 5555..5887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig735.15037.1

>prot_H-elongata_contig735.15037.1 ID=prot_H-elongata_contig735.15037.1|Name=mRNA_H-elongata_contig735.15037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MFTPIKFILQLFGVSSEVPCVWIGASSAKVGVRFLTRFLQLRFLLVGTFQ
FSYCTLCGYPFSELCFVLGIASSSVDRHSAFLRLYNHIFSLKHGNCEGSR
DVLYPTAAEG*
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mRNA from alignment at H-elongata_contig735:5555..5942+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig735.15037.1 ID=mRNA_H-elongata_contig735.15037.1|Name=mRNA_H-elongata_contig735.15037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=388bp|location=Sequence derived from alignment at H-elongata_contig735:5555..5942+ (Himanthalia elongata Himel1 dioecious)
ATGTTTACGCCGATAAAGTTCATCCTTCAGCTCTTCGGTGTATCCTCCGA
GGTACCGTGCGTTTGGATTGGGGCGAGCTCTGCAAAGGTTGGCGTCCGCT
TCCTGACCAGATTTCTCCAATTGAGATTTCTCCTTGTCGGCACTTTCCAG
TTTTCATATTGTACGCTTTGTGGCTATCCGTTTTCTGAGCTCTGCTTCGT
CTTGGGTATCGCTTCGTCATCCGTGGACAGGCATTCTGCGTTCTTGAGGT
TGTACAACCATATTTTCAGCCTAAAACATGGTAACTGTGAAGGTAGTCGT
GACGTTCTCTACCCTACTGCCGCTGAGGGGTGATGCCAAGGCGGTCTTCA
ATCGCTATCACTGCTTGATCGCGTATTGAGACTCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig735:5555..5942+

>mRNA_H-elongata_contig735.15037.1 ID=mRNA_H-elongata_contig735.15037.1|Name=mRNA_H-elongata_contig735.15037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig735:5555..5942+ (Himanthalia elongata Himel1 dioecious)
ATGTTTACGCCGATAAAGTTCATCCTTCAGCTCTTCGGTGTATCCTCCGA
GGTACCGTGCGTTTGGATTGGGGCGAGCTCTGCAAAGGTTGGCGTCCGCT
TCCTGACCAGATTTCTCCAATTGAGATTTCTCCTTGTCGGCACTTTCCAG
TTTTCATATTGTACGCTTTGTGGCTATCCGTTTTCTGAGCTCTGCTTCGT
CTTGGGTATCGCTTCGTCATCCGTGGACAGGCATTCTGCGTTCTTGAGGT
TGTACAACCATATTTTCAGCCTAAAACATGGTAACTGTGAAGGTAGTCGT
GACGTTCTCTACCCTACTGCCGCTGAGGGGTGAATGTTTACGCCGATAAA
GTTCATCCTTCAGCTCTTCGGTGTATCCTCCGAGGTACCGTGCGTTTGGA
TTGGGGCGAGCTCTGCAAAGGTTGGCGTCCGCTTCCTGACCAGATTTCTC
CAATTGAGATTTCTCCTTGTCGGCACTTTCCAGTTTTCATATTGTACGCT
TTGTGGCTATCCGTTTTCTGAGCTCTGCTTCGTCTTGGGTATCGCTTCGT
CATCCGTGGACAGGCATTCTGCGTTCTTGAGGTTGTACAACCATATTTTC
AGCCTAAAACATGGTAACTGTGAAGGTAGTCGTGACGTTCTCTACCCTAC
TGCCGCTGAGGGGTGA
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