prot_H-elongata_contig73419.15032.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig73419.15032.1
Unique Nameprot_H-elongata_contig73419.15032.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length204
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73419.15032.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 165..181
e-value: 5.8E-5
score: 32.5
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 164..180
e-value: 2.6E-6
score: 27.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 164..180
score: 11.07
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 6..112
e-value: 6.7E-9
score: 35.5
NoneNo IPR availableGENE3D4.10.60.10coord: 154..204
e-value: 5.8E-7
score: 31.2
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 164..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73419contigH-elongata_contig73419:1771..2382 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73419.15032.1mRNA_H-elongata_contig73419.15032.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig73419 1771..2382 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig73419.15032.1 ID=prot_H-elongata_contig73419.15032.1|Name=mRNA_H-elongata_contig73419.15032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
AWITLINSCRGMVLEIVQRINAPNDAWRNLETHYRAKGTREILRVSHEIN
GKIMEPGGDPFKFIMEIDRLAADLNRLGDKSVTELRNCVIIVSGLSTDYE
LEYRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSASKGHIAVNR
GKGGDRRQHPKFNRKCFNCGKGGHYARDCRASEESGTTDNRKGGGSGKCY
ICES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf