mRNA_H-elongata_contig73419.15032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73419.15032.1
Unique NamemRNA_H-elongata_contig73419.15032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73419.15032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73419contigH-elongata_contig73419:1771..2382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.7517238-CDS-H-elongata_contig73419:1770..23821622931137.7517238-CDS-H-elongata_contig73419:1770..2382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73419 1771..2382 -
1691679714.01809-CDS-H-elongata_contig73419:1770..23821691679714.01809-CDS-H-elongata_contig73419:1770..2382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73419 1771..2382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73419.15032.1prot_H-elongata_contig73419.15032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73419 1771..2382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73419.15032.1

>prot_H-elongata_contig73419.15032.1 ID=prot_H-elongata_contig73419.15032.1|Name=mRNA_H-elongata_contig73419.15032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
AWITLINSCRGMVLEIVQRINAPNDAWRNLETHYRAKGTREILRVSHEIN
GKIMEPGGDPFKFIMEIDRLAADLNRLGDKSVTELRNCVIIVSGLSTDYE
LEYRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNSKAMSASKGHIAVNR
GKGGDRRQHPKFNRKCFNCGKGGHYARDCRASEESGTTDNRKGGGSGKCY
ICES
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mRNA from alignment at H-elongata_contig73419:1771..2382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73419.15032.1 ID=mRNA_H-elongata_contig73419.15032.1|Name=mRNA_H-elongata_contig73419.15032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at H-elongata_contig73419:1771..2382- (Himanthalia elongata Himel1 dioecious)
GCTTGGATTACTCTAATTAACAGCTGCAGAGGAATGGTACTTGAAATCGT
GCAACGTATCAACGCACCGAACGACGCGTGGCGAAATCTTGAAACACACT
ACAGAGCGAAGGGAACTAGAGAGATACTTCGCGTGTCTCATGAAATCAAC
GGGAAAATAATGGAACCAGGTGGGGACCCTTTCAAATTTATTATGGAAAT
TGACAGGCTAGCAGCTGATCTCAACCGATTGGGCGACAAATCCGTGACTG
AATTAAGAAATTGCGTAATTATCGTATCTGGTCTCTCTACTGACTACGAG
TTGGAGTACCGCATGTTGGAAAATAACCCTGTTGGTCTTAACAGGGCTGA
GATTGAGCGTGTCGTAGGAAATCAGTACAACAGACTTCTTAGGCAACAAC
AGAATTCGAAGGCTATGTCGGCATCGAAGGGCCACATTGCGGTGAATCGC
GGAAAGGGGGGTGACAGAAGACAACACCCCAAATTCAACCGAAAGTGTTT
CAATTGCGGAAAGGGAGGACACTACGCTCGGGACTGCAGGGCGAGTGAAG
AATCAGGGACCACCGACAACAGAAAGGGCGGTGGCAGTGGCAAGTGTTAC
ATCTGTGAGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig73419:1771..2382-

>mRNA_H-elongata_contig73419.15032.1 ID=mRNA_H-elongata_contig73419.15032.1|Name=mRNA_H-elongata_contig73419.15032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig73419:1771..2382- (Himanthalia elongata Himel1 dioecious)
GCTTGGATTACTCTAATTAACAGCTGCAGAGGAATGGTACTTGAAATCGT
GCAACGTATCAACGCACCGAACGACGCGTGGCGAAATCTTGAAACACACT
ACAGAGCGAAGGGAACTAGAGAGATACTTCGCGTGTCTCATGAAATCAAC
GGGAAAATAATGGAACCAGGTGGGGACCCTTTCAAATTTATTATGGAAAT
TGACAGGCTAGCAGCTGATCTCAACCGATTGGGCGACAAATCCGTGACTG
AATTAAGAAATTGCGTAATTATCGTATCTGGTCTCTCTACTGACTACGAG
TTGGAGTACCGCATGTTGGAAAATAACCCTGTTGGTCTTAACAGGGCTGA
GATTGAGCGTGTCGTAGGAAATCAGTACAACAGACTTCTTAGGCAACAAC
AGAATTCGAAGGCTATGTCGGCATCGAAGGGCCACATTGCGGTGAATCGC
GGAAAGGGGGGTGACAGAAGACAACACCCCAAATTCAACCGAAAGTGTTT
CAATTGCGGAAAGGGAGGACACTACGCTCGGGACTGCAGGGCGAGTGAAG
AATCAGGGACCACCGACAACAGAAAGGGCGGTGGCAGTGGCAAGTGTTAC
ATCTGTGAGAGTGCTTGGATTACTCTAATTAACAGCTGCAGAGGAATGGT
ACTTGAAATCGTGCAACGTATCAACGCACCGAACGACGCGTGGCGAAATC
TTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATACTTCGCGTGTCT
CATGAAATCAACGGGAAAATAATGGAACCAGGTGGGGACCCTTTCAAATT
TATTATGGAAATTGACAGGCTAGCAGCTGATCTCAACCGATTGGGCGACA
AATCCGTGACTGAATTAAGAAATTGCGTAATTATCGTATCTGGTCTCTCT
ACTGACTACGAGTTGGAGTACCGCATGTTGGAAAATAACCCTGTTGGTCT
TAACAGGGCTGAGATTGAGCGTGTCGTAGGAAATCAGTACAACAGACTTC
TTAGGCAACAACAGAATTCGAAGGCTATGTCGGCATCGAAGGGCCACATT
GCGGTGAATCGCGGAAAGGGGGGTGACAGAAGACAACACCCCAAATTCAA
CCGAAAGTGTTTCAATTGCGGAAAGGGAGGACACTACGCTCGGGACTGCA
GGGCGAGTGAAGAATCAGGGACCACCGACAACAGAAAGGGCGGTGGCAGT
GGCAAGTGTTACATCTGTGAGAGT
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