mRNA_H-elongata_contig7340.15031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7340.15031.1
Unique NamemRNA_H-elongata_contig7340.15031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7340.15031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7340contigH-elongata_contig7340:6341..6700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.712247-CDS-H-elongata_contig7340:6340..67001622931137.712247-CDS-H-elongata_contig7340:6340..6700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7340 6341..6700 +
1691679714.0080554-CDS-H-elongata_contig7340:6340..67001691679714.0080554-CDS-H-elongata_contig7340:6340..6700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7340 6341..6700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7340.15031.1prot_H-elongata_contig7340.15031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7340 6341..6700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7340.15031.1

>prot_H-elongata_contig7340.15031.1 ID=prot_H-elongata_contig7340.15031.1|Name=mRNA_H-elongata_contig7340.15031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
CDCHDVAPDRPPNPFSPRSSSDTDSRRSIHTDSRRPIHTDSRRPVNTDSR
RPINTDSRRPINIDSRRPIHTDSCRPIHAGSRRCAYAGSSQRPGGSPDAS
SRRHKYVCAGGRSDAGPGK*
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mRNA from alignment at H-elongata_contig7340:6341..6700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7340.15031.1 ID=mRNA_H-elongata_contig7340.15031.1|Name=mRNA_H-elongata_contig7340.15031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig7340:6341..6700+ (Himanthalia elongata Himel1 dioecious)
TGTGATTGTCACGACGTTGCCCCCGATCGTCCCCCCAACCCCTTCTCCCC
TAGGAGCTCTTCAGACACCGACTCCCGTAGATCTATCCACACCGACTCCC
GTAGACCCATCCACACCGACTCCCGTAGACCTGTCAACACCGACTCCCGT
AGACCTATCAACACCGACTCCCGTAGACCTATCAACATCGACTCCCGTAG
ACCTATCCACACCGACTCCTGTAGACCTATCCACGCCGGCTCCCGTAGAT
GCGCCTACGCCGGTTCCAGTCAACGCCCTGGTGGATCCCCCGACGCCAGC
TCCCGTCGACACAAATACGTCTGCGCCGGTGGACGCTCCGACGCCGGCCC
CGGTAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig7340:6341..6700+

>mRNA_H-elongata_contig7340.15031.1 ID=mRNA_H-elongata_contig7340.15031.1|Name=mRNA_H-elongata_contig7340.15031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig7340:6341..6700+ (Himanthalia elongata Himel1 dioecious)
TGTGATTGTCACGACGTTGCCCCCGATCGTCCCCCCAACCCCTTCTCCCC
TAGGAGCTCTTCAGACACCGACTCCCGTAGATCTATCCACACCGACTCCC
GTAGACCCATCCACACCGACTCCCGTAGACCTGTCAACACCGACTCCCGT
AGACCTATCAACACCGACTCCCGTAGACCTATCAACATCGACTCCCGTAG
ACCTATCCACACCGACTCCTGTAGACCTATCCACGCCGGCTCCCGTAGAT
GCGCCTACGCCGGTTCCAGTCAACGCCCTGGTGGATCCCCCGACGCCAGC
TCCCGTCGACACAAATACGTCTGCGCCGGTGGACGCTCCGACGCCGGCCC
CGGTAAATGATGTGATTGTCACGACGTTGCCCCCGATCGTCCCCCCAACC
CCTTCTCCCCTAGGAGCTCTTCAGACACCGACTCCCGTAGATCTATCCAC
ACCGACTCCCGTAGACCCATCCACACCGACTCCCGTAGACCTGTCAACAC
CGACTCCCGTAGACCTATCAACACCGACTCCCGTAGACCTATCAACATCG
ACTCCCGTAGACCTATCCACACCGACTCCTGTAGACCTATCCACGCCGGC
TCCCGTAGATGCGCCTACGCCGGTTCCAGTCAACGCCCTGGTGGATCCCC
CGACGCCAGCTCCCGTCGACACAAATACGTCTGCGCCGGTGGACGCTCCG
ACGCCGGCCCCGGTAAATGA
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