mRNA_H-elongata_contig73378.15029.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73378.15029.1
Unique NamemRNA_H-elongata_contig73378.15029.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73378.15029.1 vs. uniprot
Match: D7FNB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB0_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 9.580e-29
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   16 RGANPKTRTSSGKTCLHFHKARPTVVRLLLPHLAVADVNAQDKWGNTPLHRCVCGETQDHLGECSL 213
            +GA+PK RT+S +  LHFHKARP V+RLLLP+L++ADVNAQDKWGNTPLHRC+CGE+QDHL    L
Sbjct:  101 KGADPKARTNSRQAVLHFHKARPEVIRLLLPYLSIADVNAQDKWGNTPLHRCICGESQDHLDALDL 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73378.15029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB0_ECTSI9.580e-2971.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73378contigH-elongata_contig73378:21..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FNB0
KEGG koko:K06694,ko:K15504
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-24_000070.1
Exons2
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.5458825-CDS-H-elongata_contig73378:20..1581622931137.5458825-CDS-H-elongata_contig73378:20..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73378 21..158 +
1691679713.8906012-CDS-H-elongata_contig73378:20..1581691679713.8906012-CDS-H-elongata_contig73378:20..158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73378 21..158 +
1622931137.5628393-CDS-H-elongata_contig73378:633..7141622931137.5628393-CDS-H-elongata_contig73378:633..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73378 634..714 +
1691679713.9008667-CDS-H-elongata_contig73378:633..7141691679713.9008667-CDS-H-elongata_contig73378:633..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73378 634..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73378.15029.1prot_H-elongata_contig73378.15029.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73378 21..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73378.15029.1

>prot_H-elongata_contig73378.15029.1 ID=prot_H-elongata_contig73378.15029.1|Name=mRNA_H-elongata_contig73378.15029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MSLNYRGANPKTRTSSGKTCLHFHKARPTVVRLLLPHLAVADVNAQDKWG
NTPLHRCVCGETQDHLGECSLG*
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mRNA from alignment at H-elongata_contig73378:21..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73378.15029.1 ID=mRNA_H-elongata_contig73378.15029.1|Name=mRNA_H-elongata_contig73378.15029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=694bp|location=Sequence derived from alignment at H-elongata_contig73378:21..714+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTGAATTATAGGGGAGCGAACCCCAAGACCAGGACCTCTTCGGG
AAAAACGTGTCTGCATTTCCACAAGGCTCGGCCCACGGTTGTACGGCTGC
TACTCCCACATCTGGCCGTAGCAGACGTCAACGCTCAGGTGCGGGTTTCT
CCCCTATTCGGCCAAAGATCCCCGAGGGCAAGAGTCAGGGACAGGGGAGG
GGGCTCTTCGCGTGAACGGTGCCCTTATTTTTTTCCGTAGTGTTTAAGTC
GTGTGCTGTTGCTGCTGCTGCTGCTGCTACCCAGCTGCGGTCGTCTTGCA
CCGAGACAAAAAGCAAAAAGAAACGAGATGGTGTCTCGGTCGAAGAAGAT
CGTCCAGGAAACATGTCAATGCGGGTTTGGAGCGATAGAAACAGGATAGG
TGGTGCTTCCACTCGAGCACACCCAACAGTCTCAAGGTTCTCTTTATCCC
GGAGGTTCCTTGGGGGATTTTTTGACGGACAATCTGGGGAAAATCAACTG
TCTTGCTGCAGTGTTCCGAAACAACACTTCATTGCTATTTTCAAAATTAC
GGAAGCGCCCCCCCCCATCGTCCGTAACGTTTTGGCTTCCTCGTCTACTG
CCTCGCTGCCCAGGATAAGTGGGGAAATACACCGCTCCACCGCTGCGTTT
GCGGCGAGACTCAAGACCATCTCGGTGAGTGCTCCCTTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73378:21..714+

>mRNA_H-elongata_contig73378.15029.1 ID=mRNA_H-elongata_contig73378.15029.1|Name=mRNA_H-elongata_contig73378.15029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig73378:21..714+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTGAATTATAGGGGAGCGAACCCCAAGACCAGGACCTCTTCGGG
AAAAACGTGTCTGCATTTCCACAAGGCTCGGCCCACGGTTGTACGGCTGC
TACTCCCACATCTGGCCGTAGCAGACGTCAACGCTCAGATGTCTCTGAAT
TATAGGGGAGCGAACCCCAAGACCAGGACCTCTTCGGGAAAAACGTGTCT
GCATTTCCACAAGGCTCGGCCCACGGTTGTACGGCTGCTACTCCCACATC
TGGCCGTAGCAGACGTCAACGCTCAGGATAAGTGGGGAAATACACCGCTC
CACCGCTGCGTTTGCGGCGAGACTCAAGACCATCTCGGTGAGTGCTCCCT
TGGGTGAGATAAGTGGGGAAATACACCGCTCCACCGCTGCGTTTGCGGCG
AGACTCAAGACCATCTCGGTGAGTGCTCCCTTGGGTGA
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