mRNA_H-elongata_contig73355.15028.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834L4M7_RHOSS (HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834L4M7_RHOSS) HSP 1 Score: 198 bits (504), Expect = 8.250e-59 Identity = 112/248 (45.16%), Postives = 158/248 (63.71%), Query Frame = 1
Query: 25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT--RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
RT RS AAA+ +PKTT HRR+K+ ++ HS LKP L+ K RL++ S + S + RKF + N H DEKW+Y+ +E +RYY+ E P SK +IPKVMFL V RPR + +QN +FSGKIGI+PF K A+RSS+NRP GT+ T VTK+ + +I +V+P I++++PR A + I++QQDNA+PH+ D + + A + DG+DIR+ NQP PD N+LDLG+
Sbjct: 39 RTNIRSLAAAMKVPKTTIHRRIKEGKIRPHSNALKPYLSEQAKKARLQFCLSMLEPSEDESQPRKFKSMYNYVHIDEKWFYMTKEAERYYLLPEEEEPHRTCKSKRFIPKVMFLAAVARPRFDANQNEEFSGKIGIFPFVFKEPARRSSKNRPAGTLETKAILSVTKDIIRSCLINEVLPAIQSKWPRSSA-----HETIFIQQDNAKPHIQPFDLQFVEAATKDGFDIRLSNQPPSSPDMNVLDLGY 281
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834FTG5_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FTG5_RHOSS) HSP 1 Score: 197 bits (500), Expect = 4.380e-57 Identity = 113/248 (45.56%), Postives = 159/248 (64.11%), Query Frame = 1
Query: 25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT--RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
RT RS AAA+ +PKTT HRR+K+ ++ HS LKP L+ K RL++ S + S + RKF + N H DEKW+Y+ +E + YY+ E P SK +IPKVMFL V RPR + +QN +FSGKIGI+PF K A+RSS+NRP GT+ T VTK+ + +I QV+P I++++P P+SA + I++QQDNA+PH+ D + + A + DG+DIR+ NQP PD N+LDLG+
Sbjct: 75 RTNIRSLAAAMKVPKTTIHRRIKEGKIRPHSNALKPYLSEQAKKARLQFCLSMLEPSEDESQPRKFKSMYNYVHIDEKWFYMTKEAESYYLLPEEEEPHRTCKSKRFIPKVMFLAAVARPRFDANQNEEFSGKIGIFPFVFKEPARRSSKNRPAGTLETKAILSVTKDIIRSCLINQVLPAIQSKWP--PSSA---HETIFIQQDNAKPHIQPFDLQFVEAATKDGFDIRLSNQPPSSPDMNVLDLGY 317
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 196 bits (497), Expect = 1.510e-56 Identity = 115/252 (45.63%), Postives = 159/252 (63.10%), Query Frame = 1
Query: 10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTS-SGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
PL+ R+ RS A + + K+T HRR+K+ ++ H+ +KP LT+ +K RL + S +S S S F+ + NV H DEKW+Y+ + +RYY+ GE P SK +I KVMFL V RPR + S N FSGKIGIYPFT A+RSS+NR GT+ T P VTKE + +I++V+PDI+A++PR + P I++QQDNA+PH+ +D E L A S DG+DIR+ QP PD N+LDLGF
Sbjct: 95 IPLRRRSNIRSLANLLNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPR--SHVGP----IFIQQDNAKPHIDVNDNEFLEAASQDGFDIRLNFQPSNSPDLNVLDLGF 340
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3) HSP 1 Score: 193 bits (490), Expect = 1.690e-55 Identity = 112/253 (44.27%), Postives = 159/253 (62.85%), Query Frame = 1
Query: 10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSS--GGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
PL+ R+ RS A ++ + K+T HRR+K+ ++ H+ +KP LT+ ++ RL + S ++ SS F+ + NV H DEKW+Y+ + +RYY+ G+ P SK +I K+MFL V RPR ++S N FSGKIGIYPFT A+RSS+NR GTM T P V KE + +I++V+PDI+A++PR P I++QQDNA+PH+ DD E L A S DG+DIR+ QP PD N+LDLGF
Sbjct: 95 IPLRHRSNIRSLAKSLNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSPIPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPR--GHTGP----IFIQQDNAKPHIDVDDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGF 341
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.480e-55 Identity = 113/260 (43.46%), Postives = 153/260 (58.85%), Query Frame = 1
Query: 25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF------LDLYSRCRT 774
RTT + A+ V +P T+ HR K + HS LKP LT+ +K RL+W + FV G F+ + + H DEKW+Y+ + K+ Y+ GE P SK +I KVMFL V RPR N +++ F GKIG + FTE V AQR+SRNRP+GT+VT P V+++ Y+ ++ V+P IK ++P S I +QQDNARPH+ D +LAA +DGWDI M QP PD N+LDLGF L +RCRT
Sbjct: 98 RTTLKRIASIVNMPATSLHRYFKQGLLVRHSSHLKPLLTDANKAARLKWAQKFV----GPDLVFDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRTTQSKRFITKVMFLSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKWPDARTSC------IVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPPNSPDLNVLDLGFFRAIQSLQERTRCRT 347
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI00053F3BA8 (uncharacterized protein LOC104908869 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3BA8) HSP 1 Score: 189 bits (481), Expect = 7.400e-55 Identity = 110/257 (42.80%), Postives = 160/257 (62.26%), Query Frame = 1
Query: 1 LQPFPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT-RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGFLD 753
L PL+ RTT RS AAA+G+ +T +R MK ++ H+ +KP LT KL R+ W + + ++ T KF+ + N+ H DEKW+ + + QRYY+ E P SK +I KVMF GV+ RP + + + GKIGIYPF +KV A+R S NR GT+ T P +TKE ++K+I+ V+P IK ++P P A IW+QQDNARPH+ + D + + A +SDG+++R+VNQP + PD N+LDLGF +
Sbjct: 31 LMTIPLRERTTLRSTAAALGMHNSTLYRLMKRGALRKHTNTMKPHLTQSHKLARVLWCLNAIIPATLNTIPKFSHMYNMIHIDEKWFCMSRIMQRYYLGPTEKAPHRTCKSKRFIVKVMFEGVMSRPHITSEGVSIWDGKIGIYPFVDKVPAKRRSNNREAGTLETKPITSITKEVMRQKLIQSVIPAIKQKWP-PYACKD-----IWIQQDNARPHIDSTDADFIEAATSDGFNMRLVNQPAQSPDLNVLDLGFFN 281
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS) HSP 1 Score: 190 bits (482), Expect = 3.110e-54 Identity = 112/252 (44.44%), Postives = 156/252 (61.90%), Query Frame = 1
Query: 10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRK-FNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVT-TPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
P RT RS A A+ +P+TT HRR+KD ++ H+ LKP L+ K RL++ S + SS ++ F + N H DEKW+++ +E +RYY+ E P SK +I KVMFL V RPR +T++N +FSGKIGI+PFT K A+R+S+NR GT+ T VTKE +K +I++V+P I+A++PR + I +QQDNARPH+ D E L S DG+DIR+ QP PD N+LDLGF
Sbjct: 100 LPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTLETKVVVSVTKEIIRKCLIEKVLPAIRAKWPRGNGIET-----ILIQQDNARPHIREFDAEFLEEASKDGFDIRLSFQPPNSPDLNVLDLGF 346
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI00125DF384 (uncharacterized protein LOC116015901 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF384) HSP 1 Score: 189 bits (479), Expect = 3.940e-54 Identity = 111/252 (44.05%), Postives = 154/252 (61.11%), Query Frame = 1
Query: 10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFV-STSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQE-VTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
PL RTT RS A A+ + KT+ HRR+K+ +KSHS +KP LT ++ RL++ S + S S F + + H DEKW++L + Q+YY+ GE P SK +I KVMFL V RPR ++ +N F GKIGI+PF K A+R S+NR GT+VT P E V KE +K +I V+P I+A++ + ++ I++QQDNARPH+ +D E L A DG+DIR+ QP PD N+LDLGF
Sbjct: 70 IPLNRRTTIRSMATALNMSKTSLHRRVKEGSLKSHSNAIKPLLTEENRKVRLQFCISMIDSNSPPHNPSFIDMYDRVHIDEKWFFLSKSSQKYYLLPGEDEPYRTCKSKKFIAKVMFLCAVARPRFDSGRNEMFDGKIGIFPFIYKEAAKRRSKNREAGTLVTKPIESVNKEVTRKWLIDYVLPAIRAKW------SLSSSKSIFIQQDNARPHISVNDAEFLEAAQKDGFDIRLTCQPPNSPDMNVLDLGF 315
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.110e-53 Identity = 106/253 (41.90%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 1 LQPFPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
LQ P RTT RS AAA+ +P++T H K +S ++PALT+ +K+ R++W FV + F+ + + H DEKW++ K+ YY+ GE P SK +I KVMFL V RPR ++++ F GK+G + FT KV A R SRNRP GT+VT+P VT+ YK ++ V+P IK ++P S +++ I +QQDNARPH+ D +++AA +SDGW + + QP PD NILDLGF
Sbjct: 111 LQALPKAKRTTFRSIAAALNMPRSTLHAYYKRGIFVKYSSSVRPALTDSNKIVRVKWALDFVHALNENEYVFSDMMDYVHVDEKWFFATTVKRTYYLAPGEEPPHRTCKSKKFITKVMFLSAVARPRWDSAKGELFDGKLGTWHFTTKVPAARGSRNRPAGTLVTSPVSVTRSVYKAMLLDHVIPAIKRKWP------STESKKITIQQDNARPHIPPRDHDIVAACTSDGWAMEVKYQPPNSPDMNILDLGF 357
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI0007EF4F0C (uncharacterized protein LOC108212769 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF4F0C) HSP 1 Score: 187 bits (475), Expect = 3.020e-53 Identity = 107/251 (42.63%), Postives = 152/251 (60.56%), Query Frame = 1
Query: 13 PLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSG-GTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
P RT RS A A+ L K+T HRR+++ ++ H+ +KP LT +K RLR+ S ++ F+ + N H DEKW+ + ++ QRYY+ E P S ++I K+MFL VV RPR +T +NT F GKIGI+PF K A+R S+NRP GT+ T P +TK+ +K MI +V+P I++ +P II+VQQDNA+PH+ DDPE + A +G+DIR+ QP PD N+LDLGF
Sbjct: 98 PFNRRTNIRSLACAIHLSKSTLHRRIREGHLRPHTNSIKPYLTEENKRARLRFCLSMITHDMNLNISLFSSMLNSIHIDEKWFTMTKKNQRYYILPDENPPLRTCKSSNFIDKIMFLCVVARPRFDTLRNTMFEGKIGIFPFITKEPAKRKSKNRPAGTLETKPINPITKDVTRKMMIDKVLPAIESMWP-----GGNSGGIIFVQQDNAKPHISVDDPEFVEAAKRNGFDIRLCFQPPNSPDLNVLDLGF 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73355.15028.1 >prot_H-elongata_contig73355.15028.1 ID=prot_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVAback to top mRNA from alignment at H-elongata_contig73355:1431..2216- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73355.15028.1 ID=mRNA_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig73355:1431..2216- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73355:1431..2216- >mRNA_H-elongata_contig73355.15028.1 ID=mRNA_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig73355:1431..2216- (Himanthalia elongata Himel1 dioecious)back to top |