mRNA_H-elongata_contig73351.15026.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI) HSP 1 Score: 154 bits (388), Expect = 4.750e-42 Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYAVRSFADALDD+PMALAEN+GLSPITELSAVKSRQIAEGI++LGIDCNQV GTCDMKEQGIFETLIGKQQQLLLATQVVKMILK+DDV+
Sbjct: 441 QYAVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQV----------------GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKVDDVI 530
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE) HSP 1 Score: 133 bits (335), Expect = 3.290e-38 Identity = 71/102 (69.61%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 19 FRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRISVGDARTWLQSIPRVLMPSAICLDFTAESSVIGERPAFSAKAMGISSNASAKLRTAYCT 324
FRII TT VA+RSCCCLPM VSKMPC F+S VP TWLQS+PRVL PSAICLDFTA+SSV+GERPAFSA+AMG+SS ASAKLRTAYC+
Sbjct: 1 FRIIFTTWVANRSCCCLPMSVSKMPCFFISHVP----------------TWLQSMPRVLTPSAICLDFTADSSVMGERPAFSARAMGMSSKASAKLRTAYCS 86
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7S2BNY0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNY0_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.870e-35 Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+FADAL+DIPMALAEN+GLSPIT+LSAVKSRQ+ EG LGIDC + GT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct: 61 QYALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA----------------GTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVI 150
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.710e-33 Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYAVR+FADALDD+PMALAEN+GLSPI+ELSAVK+ Q+ +G S LGIDCNQ GT DMK Q IFETLIGKQQQLLLATQVVKMILKIDD++
Sbjct: 448 QYAVRAFADALDDVPMALAENSGLSPISELSAVKAAQVKDGNSHLGIDCNQE----------------GTADMKTQRIFETLIGKQQQLLLATQVVKMILKIDDII 537
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A2G2X4S9_CAPBA (T-complex protein 1 subunit epsilon n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X4S9_CAPBA) HSP 1 Score: 120 bits (302), Expect = 5.790e-33 Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+FADALD +PMALAEN+GL PI LSAVK++QI E GIDCN V GT DM+EQ +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct: 43 QYAIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENNPCCGIDCNDV----------------GTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVI 132
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A6A6LQ33_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LQ33_HEVBR) HSP 1 Score: 119 bits (297), Expect = 1.120e-32 Identity = 67/106 (63.21%), Postives = 76/106 (71.70%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
+YA+R+FADALD IPMALAEN+GL PI LSAVKS+QI E GIDCN + GT DM EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct: 6 KYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKENNPRCGIDCNDI----------------GTNDMSEQNVFETLIGKQQQILLATQVVKMILKIDDVI 95
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A2H5NV05_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NV05_CITUN) HSP 1 Score: 120 bits (300), Expect = 2.460e-32 Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+FADALD IPMALAEN+GL PI LSAVK++QI E GIDCN V GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct: 69 QYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDV----------------GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 158
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7S2BNZ2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.500e-32 Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+FADAL+DIPMALAEN+GLSPIT+LSAVKSRQ+ EG LGIDC + GT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct: 441 QYALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA----------------GTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVI 530
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7C9E4Q3_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E4Q3_OPUST) HSP 1 Score: 118 bits (295), Expect = 2.860e-32 Identity = 67/106 (63.21%), Postives = 77/106 (72.64%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+FADALD IPMALAEN+GL PI LSAVK++Q+ E GIDCN V GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct: 14 QYAIRAFADALDAIPMALAENSGLQPIETLSAVKAQQVKENNPCCGIDCNDV----------------GTNDMREQYVFETLIGKQQQILLATQVVKMILKIDDVI 103
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A438GK88_VITVI (T-complex protein 1 subunit epsilon n=2 Tax=cellular organisms TaxID=131567 RepID=A0A438GK88_VITVI) HSP 1 Score: 119 bits (298), Expect = 3.130e-32 Identity = 68/106 (64.15%), Postives = 76/106 (71.70%), Query Frame = -2
Query: 3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
QYA+R+F DALD IPMALAEN+GL PI LSAVKS+QI E GIDCN V GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct: 53 QYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKEDNPYCGIDCNDV----------------GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73351.15026.1 >prot_H-elongata_contig73351.15026.1 ID=prot_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MSTSSIFRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRISback to top mRNA from alignment at H-elongata_contig73351:1786..2364- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73351.15026.1 ID=mRNA_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig73351:1786..2364- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73351:1786..2364- >mRNA_H-elongata_contig73351.15026.1 ID=mRNA_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig73351:1786..2364- (Himanthalia elongata Himel1 dioecious)back to top |