mRNA_H-elongata_contig73351.15026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73351.15026.1
Unique NamemRNA_H-elongata_contig73351.15026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.750e-42
Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYAVRSFADALDD+PMALAEN+GLSPITELSAVKSRQIAEGI++LGIDCNQV                GTCDMKEQGIFETLIGKQQQLLLATQVVKMILK+DDV+
Sbjct:  441 QYAVRSFADALDDVPMALAENSGLSPITELSAVKSRQIAEGITSLGIDCNQV----------------GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKVDDVI 530          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.290e-38
Identity = 71/102 (69.61%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   19 FRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRISVGDARTWLQSIPRVLMPSAICLDFTAESSVIGERPAFSAKAMGISSNASAKLRTAYCT 324
            FRII TT VA+RSCCCLPM VSKMPC F+S VP                TWLQS+PRVL PSAICLDFTA+SSV+GERPAFSA+AMG+SS ASAKLRTAYC+
Sbjct:    1 FRIIFTTWVANRSCCCLPMSVSKMPCFFISHVP----------------TWLQSMPRVLTPSAICLDFTADSSVMGERPAFSARAMGMSSKASAKLRTAYCS 86          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7S2BNY0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNY0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.870e-35
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+FADAL+DIPMALAEN+GLSPIT+LSAVKSRQ+ EG   LGIDC +                 GT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct:   61 QYALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA----------------GTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVI 150          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.710e-33
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYAVR+FADALDD+PMALAEN+GLSPI+ELSAVK+ Q+ +G S LGIDCNQ                 GT DMK Q IFETLIGKQQQLLLATQVVKMILKIDD++
Sbjct:  448 QYAVRAFADALDDVPMALAENSGLSPISELSAVKAAQVKDGNSHLGIDCNQE----------------GTADMKTQRIFETLIGKQQQLLLATQVVKMILKIDDII 537          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A2G2X4S9_CAPBA (T-complex protein 1 subunit epsilon n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X4S9_CAPBA)

HSP 1 Score: 120 bits (302), Expect = 5.790e-33
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+FADALD +PMALAEN+GL PI  LSAVK++QI E     GIDCN V                GT DM+EQ +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct:   43 QYAIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENNPCCGIDCNDV----------------GTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVI 132          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A6A6LQ33_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6LQ33_HEVBR)

HSP 1 Score: 119 bits (297), Expect = 1.120e-32
Identity = 67/106 (63.21%), Postives = 76/106 (71.70%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            +YA+R+FADALD IPMALAEN+GL PI  LSAVKS+QI E     GIDCN +                GT DM EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct:    6 KYAIRAFADALDSIPMALAENSGLQPIETLSAVKSQQIKENNPRCGIDCNDI----------------GTNDMSEQNVFETLIGKQQQILLATQVVKMILKIDDVI 95          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A2H5NV05_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NV05_CITUN)

HSP 1 Score: 120 bits (300), Expect = 2.460e-32
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+FADALD IPMALAEN+GL PI  LSAVK++QI E     GIDCN V                GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct:   69 QYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDV----------------GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 158          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7S2BNZ2_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.500e-32
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+FADAL+DIPMALAEN+GLSPIT+LSAVKSRQ+ EG   LGIDC +                 GT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDV+
Sbjct:  441 QYALRAFADALEDIPMALAENSGLSPITQLSAVKSRQVTEGNPHLGIDCKRA----------------GTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVI 530          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A7C9E4Q3_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E4Q3_OPUST)

HSP 1 Score: 118 bits (295), Expect = 2.860e-32
Identity = 67/106 (63.21%), Postives = 77/106 (72.64%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+FADALD IPMALAEN+GL PI  LSAVK++Q+ E     GIDCN V                GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct:   14 QYAIRAFADALDAIPMALAENSGLQPIETLSAVKAQQVKENNPCCGIDCNDV----------------GTNDMREQYVFETLIGKQQQILLATQVVKMILKIDDVI 103          
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Match: A0A438GK88_VITVI (T-complex protein 1 subunit epsilon n=2 Tax=cellular organisms TaxID=131567 RepID=A0A438GK88_VITVI)

HSP 1 Score: 119 bits (298), Expect = 3.130e-32
Identity = 68/106 (64.15%), Postives = 76/106 (71.70%), Query Frame = -2
Query:    3 QYAVRSFADALDDIPMALAENAGLSPITELSAVKSRQIAEGISTLGIDCNQVRASPTEIRHTCS*Q*LGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVL 320
            QYA+R+F DALD IPMALAEN+GL PI  LSAVKS+QI E     GIDCN V                GT DM+EQ +FETLIGKQQQ+LLATQVVKMILKIDDV+
Sbjct:   53 QYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKEDNPYCGIDCNDV----------------GTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73351.15026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI4.750e-4279.25T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
G3G4N4_9PHAE3.290e-3869.61T-complex protein 1 epsilon subunit (Fragment) n=2... [more]
A0A7S2BNY0_9STRA1.870e-3567.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZI55_9STRA2.710e-3368.87T-complex protein 1 subunit epsilon n=1 Tax=Tribon... [more]
A0A2G2X4S9_CAPBA5.790e-3364.15T-complex protein 1 subunit epsilon n=1 Tax=Capsic... [more]
A0A6A6LQ33_HEVBR1.120e-3263.21Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A2H5NV05_CITUN2.460e-3264.15Uncharacterized protein n=1 Tax=Citrus unshiu TaxI... [more]
A0A7S2BNZ2_9STRA2.500e-3267.92T-complex protein 1 subunit epsilon n=1 Tax=Floren... [more]
A0A7C9E4Q3_OPUST2.860e-3263.21Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A438GK88_VITVI3.130e-3264.15T-complex protein 1 subunit epsilon n=2 Tax=cellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73351contigH-elongata_contig73351:1786..2364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size339
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.200315-CDS-H-elongata_contig73351:1785..20071622931137.200315-CDS-H-elongata_contig73351:1785..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73351 1786..2007 -
1691679713.79874-CDS-H-elongata_contig73351:1785..20071691679713.79874-CDS-H-elongata_contig73351:1785..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73351 1786..2007 -
1622931137.2221115-CDS-H-elongata_contig73351:2247..23641622931137.2221115-CDS-H-elongata_contig73351:2247..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73351 2248..2364 -
1691679713.807643-CDS-H-elongata_contig73351:2247..23641691679713.807643-CDS-H-elongata_contig73351:2247..2364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73351 2248..2364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73351.15026.1prot_H-elongata_contig73351.15026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73351 1786..2364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73351.15026.1

>prot_H-elongata_contig73351.15026.1 ID=prot_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MSTSSIFRIILTTCVASRSCCCLPMRVSKMPCSFMSQVPNYCQEQVWRIS
VGDARTWLQSIPRVLMPSAICLDFTAESSVIGERPAFSAKAMGISSNASA
KLRTAYCTARQE*
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mRNA from alignment at H-elongata_contig73351:1786..2364-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73351.15026.1 ID=mRNA_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig73351:1786..2364- (Himanthalia elongata Himel1 dioecious)
ATGAGCACGTCGTCGATCTTCAGGATCATCTTGACCACCTGCGTTGCTAG CAGGAGCTGTTGCTGCTTGCCGATGAGGGTCTCGAAGATGCCCTGCTCCT TCATGTCGCAAGTTCCCGTCTGAGGCAAAGAGTGGTTGTCCCGTCCGCAA AGATGTACCGGGACATACGTTACCACCGGACATTAATCCCGCCGCAGATC AAAGTACAGAAAGTACACTTGTAGCAAGAGACATGGCTTTATTATACCAA TCGTGTTTCAAAAAGGTCGTGCCGTAGGCGAAAACTTGGCGCTTCCGGAA ATCATCACCATCGATGTACTATGAATGTTCCGAATCCTACCCTCTCTAGC GCGGCAGAACTACTGTCAAGAACAAGTGTGGCGGATTTCGGTAGGGGACG CGCGCACCTGGTTGCAGTCAATACCGAGGGTGCTGATGCCCTCGGCGATC TGCCTGGACTTCACCGCGGAAAGTTCCGTAATCGGTGAAAGACCAGCGTT CTCCGCCAAGGCCATGGGAATATCATCCAACGCGTCTGCAAAGCTCCGGA CGGCGTACTGCACGGCGCGGCAAGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73351:1786..2364-

>mRNA_H-elongata_contig73351.15026.1 ID=mRNA_H-elongata_contig73351.15026.1|Name=mRNA_H-elongata_contig73351.15026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig73351:1786..2364- (Himanthalia elongata Himel1 dioecious)
ATGAGCACGTCGTCGATCTTCAGGATCATCTTGACCACCTGCGTTGCTAG
CAGGAGCTGTTGCTGCTTGCCGATGAGGGTCTCGAAGATGCCCTGCTCCT
TCATGTCGCAAGTTCCCATGAGCACGTCGTCGATCTTCAGGATCATCTTG
ACCACCTGCGTTGCTAGCAGGAGCTGTTGCTGCTTGCCGATGAGGGTCTC
GAAGATGCCCTGCTCCTTCATGTCGCAAGTTCCCAACTACTGTCAAGAAC
AAGTGTGGCGGATTTCGGTAGGGGACGCGCGCACCTGGTTGCAGTCAATA
CCGAGGGTGCTGATGCCCTCGGCGATCTGCCTGGACTTCACCGCGGAAAG
TTCCGTAATCGGTGAAAGACCAGCGTTCTCCGCCAAGGCCATGGGAATAT
CATCCAACGCGTCTGCAAAGCTCCGGACGGCGTACTGCACGGCGCGGCAA
GAGTGAAACTACTGTCAAGAACAAGTGTGGCGGATTTCGGTAGGGGACGC
GCGCACCTGGTTGCAGTCAATACCGAGGGTGCTGATGCCCTCGGCGATCT
GCCTGGACTTCACCGCGGAAAGTTCCGTAATCGGTGAAAGACCAGCGTTC
TCCGCCAAGGCCATGGGAATATCATCCAACGCGTCTGCAAAGCTCCGGAC
GGCGTACTGCACGGCGCGGCAAGAGTGA
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